RLG00000005582

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013072
Physical Location & Seq
Forward (+)
68762170 .. 68767145
4976 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005582

Sequence Viewer

Length: 522 bp
ATGCTGGAAAATCCTACATCAGCGGCAGCAGCCGCAGCAGATCCAGCGGCAGTTGTGAAGCGCTACGCTCCTCCCAATCAGAGAAATCGTCCTCTTAACAGACGCAAGTCCGCAGAGCGGTTTGATCGAACTAACAATCTTCATGGGAATGATTTGGAAAAGAATCAAATTGCTTCTTCAAGAGGTACTGTTATAGATCATGGGGATGGAGGTAGCAGCAGTCTTCTAAATGAAAACTCTCATCCCTGGTTTATAGCTTTAGAGGGGTGTTGCAGCAGTCAGGCTTTCGATCTCTTGAATAATCGTTGGGCAGCCACAATGCATTGCTTCAATGATTCATCTATAGATCTATCAGAAAGACCCGTTATGTACTCAGGAAGTGGAGCAGCATGGGGTCACTTCAGACTCCCTCATCAGTTAATGGCTCCAGCAGGGGGTGCTGGGTCACCTGTTTCTTCCATGGACTTCTTGAGTGAACTTTGCCGCTTGAAGCACAATTCCAATGTCAGTTCTGGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.68

Weight (kDa)

7.05

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 6 cut(s) 23, 33, 47, 111, 118, 484
AclWI GGATC 1 cut(s) 35
AcuI CTGAAG 1 cut(s) 385
AfaI GTAC 2 cut(s) 187, 371
AfeI AGCGCT 1 cut(s) 62
AfiI CCNNNNNNNGG 2 cut(s) 117, 434
AgsI TTSAA 4 cut(s) 180, 298, 331, 490
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
AlwI GGATC 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 62
ApeKI GCWGC 7 cut(s) 26, 29, 35, 216, 273, 311, 386
AspLEI GCGC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 438
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 7 cut(s) 38, 41, 47, 228, 285, 323, 398
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 520
BfmI CTRYAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 64
BglII AGATCT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 426
BmrFI CCNGG 1 cut(s) 247
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 490
BsaJI CCNNGG 2 cut(s) 245, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 434
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 245, 459
BseGI GGATG 2 cut(s) 211, 241
BseLI CCNNNNNNNGG 2 cut(s) 117, 434
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 387
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 7 cut(s) 38, 41, 47, 228, 285, 323, 398
BseYI CCCAGC 1 cut(s) 440
BslI CCNNNNNNNGG 2 cut(s) 117, 434
Bsp143I GATC 5 cut(s) 40, 124, 196, 289, 346
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 6 cut(s) 23, 33, 47, 111, 118, 484
BspCNI CTCAG 1 cut(s) 386
BspLI GGNNCC 1 cut(s) 426
BspPI GGATC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 245, 459
BssMI GATC 5 cut(s) 40, 124, 196, 289, 346
BssT1I CCWWGG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 190
BstAPI GCANNNNNTGC 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 373
BstDSI CCRYGG 1 cut(s) 459
BstEII GGTNACC 1 cut(s) 444
BstF5I GGATG 2 cut(s) 211, 241
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 5 cut(s) 43, 127, 199, 292, 349
BstMBI GATC 5 cut(s) 40, 124, 196, 289, 346
BstMWI GCNNNNNNNGC 5 cut(s) 29, 32, 35, 44, 437
BstNI CCWGG 1 cut(s) 247
BstPAI GACNNNNGTC 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 7 cut(s) 38, 41, 47, 228, 285, 323, 398
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 2 cut(s) 40, 346
BstYI RGATCY 2 cut(s) 40, 346
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 2 cut(s) 211, 241
CfoI GCGC 1 cut(s) 63
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 186, 370
CviAII CATG 4 cut(s) 143, 200, 390, 460
CviJI RGCY 5 cut(s) 32, 257, 284, 314, 425
CviKI_1 RGCY 5 cut(s) 32, 257, 284, 314, 425
CviQI GTAC 2 cut(s) 186, 370
DdeI CTNAG 1 cut(s) 373
DpnI GATC 5 cut(s) 42, 126, 198, 291, 348
DpnII GATC 5 cut(s) 40, 124, 196, 289, 346
Eco130I CCWWGG 1 cut(s) 459
Eco47III AGCGCT 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 385
Eco91I GGTNACC 1 cut(s) 444
EcoO65I GGTNACC 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 459
EcoT22I ATGCAT 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 4 cut(s) 146, 203, 393, 463
FaiI YATR 8 cut(s) 144, 194, 201, 254, 344, 368, 391, 461
FatI CATG 4 cut(s) 142, 199, 389, 459
FokI GGATG 2 cut(s) 218, 228
FspBI CTAG 1 cut(s) 520
GlaI GCGC 1 cut(s) 62
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 64
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 63
Hin1II CATG 4 cut(s) 146, 203, 393, 463
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 4 cut(s) 163, 335, 405, 516
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 1 cut(s) 476
Hpy188I TCNGA 3 cut(s) 81, 355, 404
Hpy188III TCNNGA 5 cut(s) 180, 295, 375, 469, 513
Hpy8I GTNNAC 1 cut(s) 476
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 273, 322
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 32, 35, 44, 437
HpyF3I CTNAG 1 cut(s) 373
Hsp92II CATG 4 cut(s) 146, 203, 393, 463
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 40, 124, 196, 289, 346
LmnI GCTCC 3 cut(s) 73, 383, 430
Lsp1109I GCAGC 7 cut(s) 38, 41, 47, 228, 285, 323, 398
MaeI CTAG 1 cut(s) 520
MaeIII GTNAC 2 cut(s) 395, 444
MalI GATC 5 cut(s) 42, 126, 198, 291, 348
MbiI CCGCTC 1 cut(s) 118
MboI GATC 5 cut(s) 40, 124, 196, 289, 346
MboII GAAGA 4 cut(s) 131, 168, 215, 447
MflI RGATCY 2 cut(s) 40, 346
MluCI AATT 2 cut(s) 168, 496
MlyI GAGTC 1 cut(s) 399
MnlI CCTC 6 cut(s) 81, 102, 176, 203, 256, 420
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 2 cut(s) 96, 419
MslI CAYNNNNRTG 2 cut(s) 147, 204
MspA1I CMGCKG 2 cut(s) 23, 47
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 5 cut(s) 29, 32, 35, 44, 437
NcoI CCATGG 1 cut(s) 459
NdeII GATC 5 cut(s) 40, 124, 196, 289, 346
NlaIII CATG 4 cut(s) 146, 203, 393, 463
NlaIV GGNNCC 1 cut(s) 426
NmuCI GTSAC 2 cut(s) 395, 444
NsiI ATGCAT 1 cut(s) 324
PfeI GAWTC 3 cut(s) 163, 335, 516
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
PshAI GACNNNNGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 426
PsuI RGATCY 2 cut(s) 40, 346
RsaI GTAC 2 cut(s) 187, 371
RsaNI GTAC 2 cut(s) 186, 370
RseI CAYNNNNRTG 2 cut(s) 147, 204
SaqAI TTAA 2 cut(s) 96, 419
Sau3AI GATC 5 cut(s) 40, 124, 196, 289, 346
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 247
SetI ASST 4 cut(s) 187, 214, 259, 451
SfcI CTRYAG 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 147, 204
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 2 cut(s) 168, 496
SsiI CCGC 6 cut(s) 23, 33, 47, 111, 118, 484
SspMI CTAG 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 127, 288
TasI AATT 2 cut(s) 168, 496
TatI WGTACW 1 cut(s) 369
TauI GCSGC 4 cut(s) 26, 35, 50, 486
TfiI GAWTC 3 cut(s) 163, 335, 516
Tru1I TTAA 2 cut(s) 96, 419
Tru9I TTAA 2 cut(s) 96, 419
TseFI GTSAC 2 cut(s) 395, 444
TseI GCWGC 7 cut(s) 26, 29, 35, 216, 273, 311, 386
Tsp45I GTSAC 2 cut(s) 395, 444
TspDTI ATGAA 3 cut(s) 131, 246, 327
XspI CTAG 1 cut(s) 520
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.