AT5G48335

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
19587872 .. 19589606
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48335.1

Sequence Viewer

Length: 345 bp
ATGCAGAACCCGAACTCATCATCTTCACTGGTGGATTCAACCTCCGCCCCTAAACGATACACTCCACCTAACCAAAGGAACCGTTCCTCGAACCGGAGGAGATCAAGAGGAAGCTTCCATAGTAATGAGGGAGAGAGCAGTCAGTCTGTTGCTGTTGGTTTCCAGAGGGAAAACTCTTCTCCAAAGATTATATCAGTAGAGGGTTGCTCTAGGAGTGAAGCTTTTCAGCTTCTCAGTGATCGTTGGACAGCTGCAATGCATCTATACAATGACCCTAGTGTTGATTTGTCTGAAAGACCGATGATGTACTATGGTGGGGATGTGTGGGGTAAACTGCCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.78

Weight (kDa)

9.35

Isoelectric Point (pI)

73.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 45
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 39
AluBI AGCT 4 cut(s) 114, 221, 229, 251
AluI AGCT 4 cut(s) 114, 221, 229, 251
ApeKI GCWGC 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 238
BfaI CTAG 2 cut(s) 210, 276
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 1 cut(s) 268
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 261
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 112
BseXI GCAGC 1 cut(s) 238
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 93
Bsp143I GATC 2 cut(s) 101, 238
BspACI CCGC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 1 cut(s) 33
BssMI GATC 2 cut(s) 101, 238
Bst4CI ACNGT 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 233
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 104, 241
BstMBI GATC 2 cut(s) 101, 238
BstV1I GCAGC 1 cut(s) 238
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 26, 241
Csp6I GTAC 1 cut(s) 307
CviJI RGCY 4 cut(s) 114, 221, 229, 251
CviKI_1 RGCY 4 cut(s) 114, 221, 229, 251
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 233
DpnI GATC 2 cut(s) 103, 240
DpnII GATC 2 cut(s) 101, 238
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
EciI GGCGGA 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 261
FaiI YATR 4 cut(s) 120, 191, 265, 312
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 1 cut(s) 332
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 2 cut(s) 210, 276
GluI GCNGC 1 cut(s) 252
HapII CCGG 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 112, 219
HinfI GANTC 1 cut(s) 35
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 2 cut(s) 105, 163
Hpy8I GTNNAC 1 cut(s) 332
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4V TGCA 3 cut(s) 4, 254, 259
HpyF3I CTNAG 1 cut(s) 233
Kzo9I GATC 2 cut(s) 101, 238
LpnPI CCDG 3 cut(s) 14, 107, 176
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 210, 276
MalI GATC 2 cut(s) 103, 240
MboI GATC 2 cut(s) 101, 238
MboII GAAGA 2 cut(s) 15, 168
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 7 cut(s) 52, 90, 97, 101, 121, 159, 193
Mph1103I ATGCAT 1 cut(s) 261
MroXI GAANNNNTTC 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 1 cut(s) 94
NdeII GATC 2 cut(s) 101, 238
NlaIV GGNNCC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 251
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 123
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 2 cut(s) 101, 238
SetI ASST 6 cut(s) 44, 70, 116, 223, 231, 253
SfaNI GCATC 1 cut(s) 268
SgeI CNNG 8 cut(s) 22, 41, 100, 106, 117, 175, 222, 288
SmiMI CAYNNNNRTG 1 cut(s) 123
SsiI CCGC 1 cut(s) 45
SspMI CTAG 2 cut(s) 210, 276
TaaI ACNGT 1 cut(s) 83
TaqI TCGA 1 cut(s) 89
TaqII GACCGA 1 cut(s) 313
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 1 cut(s) 35
TscAI CASTG 2 cut(s) 33, 241
TseI GCWGC 1 cut(s) 251
TspRI CASTG 2 cut(s) 33, 241
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 2 cut(s) 210, 276
Zsp2I ATGCAT 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.