Rh7BG000600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013072
Physical Location & Seq
Reverse (-)
54371 .. 60336
5966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG000600.1

Sequence Viewer

Length: 453 bp
ATGCTGGAAAATCCTTCATCAGCGGCAGCAGCCGCAGCAGATCCGACGAAGCGCTACGCTCCTCCCAATCAGAGAAATCGTCCTCCTAACAGACGCAAGTCCGCAGAGCGGTTTGATCGAACTAACAATCTTCATGGGAATGATTTGGAAAAGAATCAAATTGCTTCTTCAAGAGGTACTGTTATAGATCATGGGGATGGAGGTAGCAGCAGTCTTCTAAATGAAAACTCTCATCCCTGGTTTATAGCTTTAGAGGGGTGTTGCAGCAGTCAGGCTTTCGATCTCTTGAATAATCGTTGGGCAGCCACAATGCATTGCTTCAATGATTCATCTATAGATCTATCAGGTCAGTGGACTAACTCTTTGGTTATTTTGAGGTTTTATATCATAGTGTGCATGAAAGTACAGACATATTCAAGTTATGAAGATATCCAAACTGATGTATATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.84

Weight (kDa)

6.4

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 109
AciI CCGC 4 cut(s) 23, 33, 102, 109
AclWI GGATC 1 cut(s) 35
AfaI GTAC 2 cut(s) 178, 405
AfeI AGCGCT 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 4 cut(s) 171, 289, 322, 417
AjnI CCWGG 1 cut(s) 236
AluBI AGCT 1 cut(s) 248
AluI AGCT 1 cut(s) 248
AlwI GGATC 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 53
ApeKI GCWGC 6 cut(s) 26, 29, 35, 207, 264, 302
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AspLEI GCGC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 6 cut(s) 38, 41, 47, 219, 276, 314
BccI CCATC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 238
BfmI CTRYAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 337
BisI GCNGC 8 cut(s) 24, 27, 30, 33, 36, 208, 265, 303
BlsI GCNGC 8 cut(s) 25, 28, 31, 34, 37, 209, 266, 304
Bme1390I CCNGG 1 cut(s) 238
BmrFI CCNGG 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 202, 232
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 313
BseRI GAGGAG 1 cut(s) 51
BseXI GCAGC 6 cut(s) 38, 41, 47, 219, 276, 314
BslI CCNNNNNNNGG 1 cut(s) 108
Bsp143I GATC 5 cut(s) 40, 115, 187, 280, 337
BspACI CCGC 4 cut(s) 23, 33, 102, 109
BspPI GGATC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 5 cut(s) 40, 115, 187, 280, 337
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 181
BstF5I GGATG 2 cut(s) 202, 232
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 1 cut(s) 54
BstKTI GATC 5 cut(s) 43, 118, 190, 283, 340
BstMBI GATC 5 cut(s) 40, 115, 187, 280, 337
BstMWI GCNNNNNNNGC 3 cut(s) 29, 32, 35
BstNI CCWGG 1 cut(s) 238
BstPAI GACNNNNGTC 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 6 cut(s) 38, 41, 47, 219, 276, 314
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 40, 337
BstYI RGATCY 2 cut(s) 40, 337
BtsCI GGATG 2 cut(s) 202, 232
BtsIMutI CAGTG 1 cut(s) 356
CfoI GCGC 1 cut(s) 54
CseI GACGC 1 cut(s) 102
Csp6I GTAC 2 cut(s) 177, 404
CviAII CATG 3 cut(s) 134, 191, 397
CviJI RGCY 4 cut(s) 32, 248, 275, 305
CviKI_1 RGCY 4 cut(s) 32, 248, 275, 305
CviQI GTAC 2 cut(s) 177, 404
DpnI GATC 5 cut(s) 42, 117, 189, 282, 339
DpnII GATC 5 cut(s) 40, 115, 187, 280, 337
Eco32I GATATC 1 cut(s) 430
Eco47III AGCGCT 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 315
FaeI CATG 3 cut(s) 137, 194, 400
FatI CATG 3 cut(s) 133, 190, 396
Fnu4HI GCNGC 8 cut(s) 24, 27, 30, 33, 36, 208, 265, 303
FokI GGATG 2 cut(s) 209, 219
Fsp4HI GCNGC 8 cut(s) 24, 27, 30, 33, 36, 208, 265, 303
GlaI GCGC 1 cut(s) 53
GluI GCNGC 8 cut(s) 24, 27, 30, 33, 36, 208, 265, 303
HaeII RGCGCY 1 cut(s) 55
HgaI GACGC 1 cut(s) 102
HhaI GCGC 1 cut(s) 54
Hin1II CATG 3 cut(s) 137, 194, 400
Hin6I GCGC 1 cut(s) 52
HinP1I GCGC 1 cut(s) 52
HinfI GANTC 2 cut(s) 154, 326
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 2 cut(s) 45, 72
Hpy188III TCNNGA 2 cut(s) 171, 286
Hpy8I GTNNAC 1 cut(s) 354
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 264, 313, 396
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 32, 35
Hsp92II CATG 3 cut(s) 137, 194, 400
HspAI GCGC 1 cut(s) 52
Kzo9I GATC 5 cut(s) 40, 115, 187, 280, 337
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 4 cut(s) 223, 250, 257, 330
Lsp1109I GCAGC 6 cut(s) 38, 41, 47, 219, 276, 314
MalI GATC 5 cut(s) 42, 117, 189, 282, 339
MbiI CCGCTC 1 cut(s) 109
MboI GATC 5 cut(s) 40, 115, 187, 280, 337
MboII GAAGA 4 cut(s) 122, 159, 206, 437
MflI RGATCY 2 cut(s) 40, 337
MluCI AATT 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 6 cut(s) 72, 93, 167, 194, 247, 369
Mph1103I ATGCAT 1 cut(s) 315
MslI CAYNNNNRTG 2 cut(s) 138, 195
MspA1I CMGCKG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 238
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 29, 32, 35
NdeII GATC 5 cut(s) 40, 115, 187, 280, 337
NlaIII CATG 3 cut(s) 137, 194, 400
NsiI ATGCAT 1 cut(s) 315
PfeI GAWTC 2 cut(s) 154, 326
PkrI GCNGC 8 cut(s) 25, 28, 31, 34, 37, 209, 266, 304
PshAI GACNNNNGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PsuI RGATCY 2 cut(s) 40, 337
RsaI GTAC 2 cut(s) 178, 405
RsaNI GTAC 2 cut(s) 177, 404
RseI CAYNNNNRTG 2 cut(s) 138, 195
SatI GCNGC 8 cut(s) 24, 27, 30, 33, 36, 208, 265, 303
Sau3AI GATC 5 cut(s) 40, 115, 187, 280, 337
ScrFI CCNGG 1 cut(s) 238
SetI ASST 5 cut(s) 178, 205, 250, 349, 380
SfcI CTRYAG 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 138, 195
Sse9I AATT 1 cut(s) 159
SsiI CCGC 4 cut(s) 23, 33, 102, 109
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 118, 279
TasI AATT 1 cut(s) 159
TatI WGTACW 1 cut(s) 403
TauI GCSGC 2 cut(s) 26, 35
TfiI GAWTC 2 cut(s) 154, 326
TscAI CASTG 1 cut(s) 356
TseI GCWGC 6 cut(s) 26, 29, 35, 207, 264, 302
TspDTI ATGAA 6 cut(s) 6, 122, 237, 318, 413, 438
TspRI CASTG 1 cut(s) 356
Zsp2I ATGCAT 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.