Rroxscaffold_3G00276380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0013072
Physical Location & Seq
Forward (+)
67645339 .. 67650699
5361 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276380.1

Sequence Viewer

Length: 552 bp
ATGCTGGAAAATCCTTCATCAGCGGCAGCAGCCGCAGCAGATCCAGCTGCAGTGGTGAAGCGCTACGCTCCTCCCAATCAGAGAAATCGTCCTCTTAACAGACGCAAGTCCGCAGAGCGGTTTGATCGAACTAACAATCTTCATGGGAATGATTTGGAAAAGAATCAAATTGCTTCTTCAAGAGGTACTGTTATAGATCATGGGGATGGAGGTAGCAGCAGTCTTCTAAATGAAAACTCTCATCCCTGGTTTATAGCTTTAGAGGGGTGTTGCAGCAGTCAGGCTTTCGATCTCTTGAATAATCGTTGGGCAGCCACAATGCATTGCTTCAATGATTCATCTATAGATCTATCAGGTCACTGGACTAACGCTTTGGTTATTTTGAGAAAGACCCGTTATGTACTCAGGAAGCGGAGCAGCATGGGGTCACTTAAGACTCCCTCATCAGTTAATGGCTCCAGCAGGGGTGCTGGCTCACCTGTTTCTTCCGTGGACTTCTTGAGTGAACTTTGCCGCTTGAAACACAATTCCAATGTCAGTTCTGGAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

19.85

Weight (kDa)

9.63

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AciI CCGC 6 cut(s) 23, 33, 111, 118, 412, 514
AclWI GGATC 1 cut(s) 35
AfaI GTAC 2 cut(s) 187, 402
AfeI AGCGCT 1 cut(s) 62
AfiI CCNNNNNNNGG 1 cut(s) 117
AflII CTTAAG 1 cut(s) 431
AgsI TTSAA 4 cut(s) 180, 298, 331, 520
AjnI CCWGG 1 cut(s) 245
AluBI AGCT 2 cut(s) 47, 257
AluI AGCT 2 cut(s) 47, 257
AlwI GGATC 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 62
ApeKI GCWGC 8 cut(s) 26, 29, 35, 47, 216, 273, 311, 417
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AspLEI GCGC 1 cut(s) 63
AsuHPI GGTGA 2 cut(s) 67, 468
BbsI GAAGAC 1 cut(s) 215
BbvI GCAGC 8 cut(s) 34, 38, 41, 47, 228, 285, 323, 429
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 247
BfaI CTAG 1 cut(s) 550
BfmI CTRYAG 2 cut(s) 48, 342
BfoI RGCGCY 1 cut(s) 64
BfrI CTTAAG 1 cut(s) 431
BglII AGATCT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 247
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 442
BpuEI CTTGAG 1 cut(s) 520
BsaJI CCNNGG 2 cut(s) 245, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 245, 489
BseGI GGATG 2 cut(s) 211, 241
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 418
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 8 cut(s) 34, 38, 41, 47, 228, 285, 323, 429
BslI CCNNNNNNNGG 1 cut(s) 117
Bsp143I GATC 5 cut(s) 40, 124, 196, 289, 346
BspACI CCGC 6 cut(s) 23, 33, 111, 118, 412, 514
BspCNI CTCAG 1 cut(s) 417
BspLI GGNNCC 1 cut(s) 457
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 35
BspTI CTTAAG 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 245, 489
BssMI GATC 5 cut(s) 40, 124, 196, 289, 346
Bst2UI CCWGG 1 cut(s) 247
Bst4CI ACNGT 1 cut(s) 190
BstAFI CTTAAG 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 472
BstDEI CTNAG 1 cut(s) 404
BstDSI CCRYGG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 211, 241
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 5 cut(s) 43, 127, 199, 292, 349
BstMBI GATC 5 cut(s) 40, 124, 196, 289, 346
BstMWI GCNNNNNNNGC 4 cut(s) 29, 32, 35, 44
BstNI CCWGG 1 cut(s) 247
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 245
BstSFI CTRYAG 2 cut(s) 48, 342
BstV1I GCAGC 8 cut(s) 34, 38, 41, 47, 228, 285, 323, 429
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 2 cut(s) 40, 346
BstYI RGATCY 2 cut(s) 40, 346
BtgI CCRYGG 1 cut(s) 489
BtsCI GGATG 2 cut(s) 211, 241
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 358
Cac8I GCNNGC 1 cut(s) 472
CfoI GCGC 1 cut(s) 63
CseI GACGC 1 cut(s) 111
Csp6I GTAC 2 cut(s) 186, 401
CviAII CATG 3 cut(s) 143, 200, 421
CviJI RGCY 7 cut(s) 32, 47, 257, 284, 314, 456, 474
CviKI_1 RGCY 7 cut(s) 32, 47, 257, 284, 314, 456, 474
CviQI GTAC 2 cut(s) 186, 401
DdeI CTNAG 1 cut(s) 404
DpnI GATC 5 cut(s) 42, 126, 198, 291, 348
DpnII GATC 5 cut(s) 40, 124, 196, 289, 346
Eco47III AGCGCT 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 245
EcoT22I ATGCAT 1 cut(s) 324
FaeI CATG 3 cut(s) 146, 203, 424
FaiI YATR 7 cut(s) 144, 194, 201, 254, 344, 399, 422
FatI CATG 3 cut(s) 142, 199, 420
FokI GGATG 2 cut(s) 218, 228
FspBI CTAG 1 cut(s) 550
GlaI GCGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 442
HaeII RGCGCY 1 cut(s) 64
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 63
Hin1II CATG 3 cut(s) 146, 203, 424
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 4 cut(s) 163, 335, 436, 546
HphI GGTGA 2 cut(s) 67, 468
Hpy166II GTNNAC 2 cut(s) 493, 506
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 5 cut(s) 180, 295, 406, 499, 543
Hpy8I GTNNAC 2 cut(s) 493, 506
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 3 cut(s) 50, 273, 322
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 32, 35, 44
HpyF3I CTNAG 1 cut(s) 404
Hsp92II CATG 3 cut(s) 146, 203, 424
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 40, 124, 196, 289, 346
LmnI GCTCC 3 cut(s) 73, 414, 461
Lsp1109I GCAGC 8 cut(s) 34, 38, 41, 47, 228, 285, 323, 429
MaeI CTAG 1 cut(s) 550
MaeIII GTNAC 2 cut(s) 356, 426
MalI GATC 5 cut(s) 42, 126, 198, 291, 348
MbiI CCGCTC 1 cut(s) 118
MboI GATC 5 cut(s) 40, 124, 196, 289, 346
MboII GAAGA 4 cut(s) 131, 168, 215, 477
MflI RGATCY 2 cut(s) 40, 346
MluCI AATT 2 cut(s) 168, 526
MlyI GAGTC 1 cut(s) 430
MnlI CCTC 6 cut(s) 81, 102, 176, 203, 256, 451
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 3 cut(s) 96, 432, 450
MslI CAYNNNNRTG 2 cut(s) 147, 204
MspA1I CMGCKG 2 cut(s) 23, 47
MspCI CTTAAG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 247
MvaI CCWGG 1 cut(s) 247
MwoI GCNNNNNNNGC 4 cut(s) 29, 32, 35, 44
NdeII GATC 5 cut(s) 40, 124, 196, 289, 346
NlaIII CATG 3 cut(s) 146, 203, 424
NlaIV GGNNCC 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 356, 426
NsiI ATGCAT 1 cut(s) 324
PfeI GAWTC 3 cut(s) 163, 335, 546
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PshAI GACNNNNGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 245
PspGI CCWGG 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 457
PstI CTGCAG 1 cut(s) 52
PsuI RGATCY 2 cut(s) 40, 346
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 187, 402
RsaNI GTAC 2 cut(s) 186, 401
RseI CAYNNNNRTG 2 cut(s) 147, 204
SaqAI TTAA 3 cut(s) 96, 432, 450
Sau3AI GATC 5 cut(s) 40, 124, 196, 289, 346
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 1 cut(s) 247
SetI ASST 6 cut(s) 49, 187, 214, 259, 358, 481
SfcI CTRYAG 2 cut(s) 48, 342
SmiMI CAYNNNNRTG 2 cut(s) 147, 204
SmlI CTYRAG 2 cut(s) 431, 499
SmoI CTYRAG 2 cut(s) 431, 499
Sse9I AATT 2 cut(s) 168, 526
SsiI CCGC 6 cut(s) 23, 33, 111, 118, 412, 514
SspMI CTAG 1 cut(s) 550
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 127, 288
TasI AATT 2 cut(s) 168, 526
TatI WGTACW 1 cut(s) 400
TauI GCSGC 3 cut(s) 26, 35, 516
TfiI GAWTC 3 cut(s) 163, 335, 546
Tru1I TTAA 3 cut(s) 96, 432, 450
Tru9I TTAA 3 cut(s) 96, 432, 450
TscAI CASTG 2 cut(s) 57, 365
TseFI GTSAC 2 cut(s) 356, 426
TseI GCWGC 8 cut(s) 26, 29, 35, 47, 216, 273, 311, 417
Tsp45I GTSAC 2 cut(s) 356, 426
TspDTI ATGAA 4 cut(s) 6, 131, 246, 327
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 2 cut(s) 57, 365
Vha464I CTTAAG 1 cut(s) 431
XspI CTAG 1 cut(s) 550
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.