pycom03g23680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013072
Physical Location & Seq
Reverse (-)
23523016 .. 23531101
8086 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g23680.3

Sequence Viewer

Length: 525 bp
ATGCTGGAAAATCCTCCATCAGCGGCAGCAGCCGCAGCAGATCCAGGGGCGGTCGTGAAGCGCTATGCTCCTCCCAATCAGAGGAATCGTCCTCTTAACAGACGCAAATCCGCAGATCGGTTTGATCGAACTAACAATCCTCATGGCGGGAGTGATCTGGAGAAGAGTCAAATTTCTAGTTCAAGAAATATTTCTGTTATGGATCATGGAGATGGAAGCAGCAGCAATCTTCTGAATGAGAACTCTCGGGGGTTAATAGCTCTAGAGGGGTGTTGCACGAGTGAAGCTTTCCAGCTCTTACATAGTCGTTGGGCAGCTGCAATGCGTTGCTTCAACGATCCATCTGTAGATCTACCAGAAAGACCAGTAATGTACACAGGAAGCTGCTCAGCATGGGGTCCCTTCCTCCTTCCTCATCAGTTAATGGCTTCGACAGTGGGTGCTGGGTCTCCTGCTTCACCAATGGACTTCTTGAGTCAACTTTGTCGTTCAAAGAACATTTCCGGTGCTGGTTTCGAGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.65

Weight (kDa)

7.68

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 23, 33, 50, 111, 147
AclWI GGATC 3 cut(s) 35, 210, 332
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 374
AfeI AGCGCT 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 81, 117, 146
AgsI TTSAA 3 cut(s) 183, 334, 492
AjnI CCWGG 1 cut(s) 43
AloI GAACNNNNNNTCC 2 cut(s) 121, 153
AluBI AGCT 5 cut(s) 260, 287, 295, 317, 384
AluI AGCT 5 cut(s) 260, 287, 295, 317, 384
Alw26I GTCTC 2 cut(s) 453, 512
AlwI GGATC 3 cut(s) 35, 210, 332
Ama87I CYCGRG 1 cut(s) 246
Aor51HI AGCGCT 1 cut(s) 62
ApeKI GCWGC 8 cut(s) 26, 29, 35, 219, 222, 314, 317, 384
ApoI RAATTY 1 cut(s) 171
Asp700I GAANNNNTTC 1 cut(s) 190
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 450
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 398
BauI CACGAG 1 cut(s) 277
BbvI GCAGC 8 cut(s) 38, 41, 47, 231, 234, 304, 326, 371
BccI CCATC 3 cut(s) 25, 206, 349
BciT130I CCWGG 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 453, 512
BfaI CTAG 2 cut(s) 177, 263
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 64
BglII AGATCT 1 cut(s) 349
BlpI GCTNAGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 45
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 399, 400
BmrFI CCNGG 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 179
Bpu1102I GCTNAGC 1 cut(s) 388
BpuEI CTTGAG 1 cut(s) 493
BsaI GGTCTC 1 cut(s) 453
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 503
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 117, 146
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 44
BseLI CCNNNNNNNGG 3 cut(s) 81, 117, 146
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 8 cut(s) 38, 41, 47, 231, 234, 304, 326, 371
BseYI CCCAGC 1 cut(s) 443
Bsh1285I CGRYCG 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 3 cut(s) 81, 117, 146
BsmAI GTCTC 2 cut(s) 453, 512
BsmFI GGGAC 1 cut(s) 384
Bso31I GGTCTC 1 cut(s) 453
BsoBI CYCGRG 1 cut(s) 246
Bsp1407I TGTACA 1 cut(s) 372
Bsp143I GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
Bsp1720I GCTNAGC 1 cut(s) 388
BspACI CCGC 5 cut(s) 23, 33, 50, 111, 147
BspCNI CTCAG 1 cut(s) 401
BspLI GGNNCC 2 cut(s) 399, 400
BspPI GGATC 3 cut(s) 35, 210, 332
BspTNI GGTCTC 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 327
BsrGI TGTACA 1 cut(s) 372
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
BssSI CACGAG 1 cut(s) 277
Bst2BI CACGAG 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 158
BstAUI TGTACA 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 388, 522
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 7 cut(s) 43, 118, 127, 157, 205, 340, 352
BstMAI GTCTC 2 cut(s) 453, 512
BstMBI GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 3 cut(s) 29, 32, 35
BstNI CCWGG 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 43
BstSFI CTRYAG 1 cut(s) 345
BstV1I GCAGC 8 cut(s) 38, 41, 47, 231, 234, 304, 326, 371
BstX2I RGATCY 2 cut(s) 40, 349
BstYI RGATCY 2 cut(s) 40, 349
BtsIMutI CAGTG 1 cut(s) 441
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 373
CviAII CATG 3 cut(s) 143, 206, 393
CviJI RGCY 7 cut(s) 32, 260, 287, 295, 317, 384, 428
CviKI_1 RGCY 7 cut(s) 32, 260, 287, 295, 317, 384, 428
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 2 cut(s) 388, 522
DpnI GATC 7 cut(s) 42, 117, 126, 156, 204, 339, 351
DpnII GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 398
Eco47III AGCGCT 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 43
FaeI CATG 3 cut(s) 146, 209, 396
FaiI YATR 6 cut(s) 66, 144, 200, 207, 303, 394
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 142, 205, 392
FauI CCCGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 177, 263
GlaI GCGC 1 cut(s) 62
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 64
HapII CCGG 1 cut(s) 504
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 63
Hin1II CATG 3 cut(s) 146, 209, 396
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 1 cut(s) 479
HindII GTYRAC 1 cut(s) 479
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 3 cut(s) 85, 166, 475
HpaII CCGG 1 cut(s) 504
HphI GGTGA 1 cut(s) 450
Hpy166II GTNNAC 2 cut(s) 375, 479
Hpy188I TCNGA 2 cut(s) 81, 234
Hpy188III TCNNGA 6 cut(s) 55, 158, 183, 263, 472, 517
Hpy8I GTNNAC 2 cut(s) 375, 479
HpyAV CCTTC 2 cut(s) 412, 419
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 2 cut(s) 276, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 32, 35
HpyF3I CTNAG 2 cut(s) 388, 522
Hsp92II CATG 3 cut(s) 146, 209, 396
HspAI GCGC 1 cut(s) 61
KflI GGGWCCC 1 cut(s) 398
Kzo9I GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 8 cut(s) 38, 41, 47, 231, 234, 304, 326, 371
MaeI CTAG 2 cut(s) 177, 263
MalI GATC 7 cut(s) 42, 117, 126, 156, 204, 339, 351
MboI GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
MboII GAAGA 2 cut(s) 175, 221
MflI RGATCY 2 cut(s) 40, 349
MluCI AATT 1 cut(s) 171
MlyI GAGTC 2 cut(s) 175, 484
MnlI CCTC 8 cut(s) 24, 75, 81, 102, 150, 259, 416, 423
MroXI GAANNNNTTC 1 cut(s) 190
MseI TTAA 3 cut(s) 96, 254, 422
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 2 cut(s) 23, 317
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 1 cut(s) 45
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 29, 32, 35
NdeII GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
NlaIII CATG 3 cut(s) 146, 209, 396
NlaIV GGNNCC 2 cut(s) 399, 400
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 85
PleI GAGTC 2 cut(s) 174, 483
PpsI GAGTC 2 cut(s) 174, 483
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 399, 400
PspPI GGNCC 1 cut(s) 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 2 cut(s) 40, 349
PvuII CAGCTG 1 cut(s) 317
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 3 cut(s) 96, 254, 422
Sau3AI GATC 7 cut(s) 40, 115, 124, 154, 202, 337, 349
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 2 cut(s) 175, 484
ScrFI CCNGG 1 cut(s) 45
SetI ASST 5 cut(s) 262, 289, 297, 319, 386
SfcI CTRYAG 1 cut(s) 345
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 1 cut(s) 171
SsiI CCGC 5 cut(s) 23, 33, 50, 111, 147
SspI AATATT 1 cut(s) 190
SspMI CTAG 2 cut(s) 177, 263
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 436
TaqI TCGA 3 cut(s) 127, 431, 516
TasI AATT 1 cut(s) 171
TatI WGTACW 1 cut(s) 372
TauI GCSGC 2 cut(s) 26, 35
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 3 cut(s) 96, 254, 422
Tru9I TTAA 3 cut(s) 96, 254, 422
TscAI CASTG 1 cut(s) 441
TseI GCWGC 8 cut(s) 26, 29, 35, 219, 222, 314, 317, 384
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 1 cut(s) 171
XbaI TCTAGA 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 2 cut(s) 177, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.