Prupe.8G267200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013072
Physical Location & Seq
Reverse (-)
22308326 .. 22311469
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G267200.1

Sequence Viewer

Length: 528 bp
ATGCTGGAAAATCCGACATCAGCGGCAGCAGCCGCAGCAGATCCACCGGCAAACGTGAAGCGCTATGCTCCTCCCAGTCAGAGGAATCGTCCTCTTAACAGACGCAAGTCCGCAGATCGGTTTGATCGAACTAACAATCCTCAAAGCGGGAATGATTTGGAGAAGAATCAAATTTCTTCTTCAAGAAGTTTATCTGGTATGGATCATGGGGATGCAAGTAGCAGCAGTCTTCTGAATGAGAACTCTCGTCCAGGGTTACTAGCTCTAGAGGGGTGTAGCAGCAGTGCAGCTTTCCAGCTCTTAAATAATCGTTGGGCTGCTGCAATGCATTGCTTCAATGATCCATCTGTAGATTTATCAGAAAGACCAGTTATGTACACAGGAGGCGGAGCAGCATGGGGTCAGTTCCAACTTCCTCATCAGTTAATGGCTTCGACAGGCGGTGCTGGGTCTCCTGGTTCATCAATGGATTTCTTGAGTGAACTTCGCCGCTCAAAGAACATTTCCCATGCCAGTTTTAGAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.74

Weight (kDa)

9.18

Isoelectric Point (pI)

62.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013072)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07580 AT3G07580 AT5G48335
fragaria_vesca FvH4_5g18680 FvH4_5g18680
malus_domestica MD03G1298800.v1.1
prunus_persica Prupe.8G267200_v2.0.a1
pyrus_communis pycom03g23680
rosa_chinensis RchiOBHm_Chr7g0176831
rosa_laevigata RLG00000005582
rosa_multiflora Rmu_sc0005162.1_g000005
rosa_roxburghii Rroxscaffold_3G00276380
rosa_rugosa Rorug06G0401100
rosa_samantha Rh7AG000300 Rh7BG000600 Rh7CG000300 Rh7DG000500
rosa_wichuraiana Rw7G000020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 492
AciI CCGC 7 cut(s) 23, 33, 111, 147, 387, 441, 490
AclWI GGATC 3 cut(s) 35, 210, 335
AcsI RAATTY 1 cut(s) 171
AfaI GTAC 1 cut(s) 377
AfeI AGCGCT 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 81, 117, 146
AgsI TTSAA 2 cut(s) 183, 337
AjnI CCWGG 2 cut(s) 250, 454
AloI GAACNNNNNNTCC 2 cut(s) 121, 153
AluBI AGCT 3 cut(s) 263, 290, 298
AluI AGCT 3 cut(s) 263, 290, 298
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 3 cut(s) 35, 210, 335
Aor51HI AGCGCT 1 cut(s) 62
ApeKI GCWGC 9 cut(s) 26, 29, 35, 222, 279, 287, 317, 320, 392
ApoI RAATTY 1 cut(s) 171
AspLEI GCGC 1 cut(s) 63
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 9 cut(s) 38, 41, 47, 234, 291, 299, 304, 307, 404
BccI CCATC 1 cut(s) 352
BciT130I CCWGG 2 cut(s) 252, 456
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 3 cut(s) 260, 266, 526
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 252, 456
BmrFI CCNGG 2 cut(s) 252, 456
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 69
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 496
BsaI GGTCTC 1 cut(s) 456
BsaJI CCNNGG 1 cut(s) 251
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 117, 146
Bse118I RCCGGY 1 cut(s) 46
Bse1I ACTGG 3 cut(s) 75, 368, 513
Bse3DI GCAATG 2 cut(s) 328, 330
BseBI CCWGG 2 cut(s) 252, 456
BseDI CCNNGG 1 cut(s) 251
BseGI GGATG 1 cut(s) 217
BseLI CCNNNNNNNGG 3 cut(s) 81, 117, 146
BseMI GCAATG 2 cut(s) 328, 330
BseNI ACTGG 3 cut(s) 75, 368, 513
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 9 cut(s) 38, 41, 47, 234, 291, 299, 304, 307, 404
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 306
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 3 cut(s) 81, 117, 146
BsmAI GTCTC 1 cut(s) 456
Bso31I GGTCTC 1 cut(s) 456
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 5 cut(s) 40, 115, 124, 202, 340
BspACI CCGC 7 cut(s) 23, 33, 111, 147, 387, 441, 490
BspPI GGATC 3 cut(s) 35, 210, 335
BspTNI GGTCTC 1 cut(s) 456
BsrBI CCGCTC 1 cut(s) 492
BsrDI GCAATG 2 cut(s) 328, 330
BsrFI RCCGGY 1 cut(s) 46
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 3 cut(s) 75, 368, 513
BssAI RCCGGY 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 251
BssMI GATC 5 cut(s) 40, 115, 124, 202, 340
Bst2UI CCWGG 2 cut(s) 252, 456
BstAUI TGTACA 1 cut(s) 375
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 5 cut(s) 43, 118, 127, 205, 343
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 5 cut(s) 40, 115, 124, 202, 340
BstMWI GCNNNNNNNGC 3 cut(s) 29, 32, 35
BstNI CCWGG 2 cut(s) 252, 456
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 250, 454
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 9 cut(s) 38, 41, 47, 234, 291, 299, 304, 307, 404
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 46
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 376
CviAII CATG 3 cut(s) 206, 396, 509
CviJI RGCY 6 cut(s) 32, 263, 290, 298, 317, 431
CviKI_1 RGCY 6 cut(s) 32, 263, 290, 298, 317, 431
CviQI GTAC 1 cut(s) 376
DpnI GATC 5 cut(s) 42, 117, 126, 204, 342
DpnII GATC 5 cut(s) 40, 115, 124, 202, 340
EciI GGCGGA 1 cut(s) 402
Eco31I GGTCTC 1 cut(s) 456
Eco47III AGCGCT 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 250, 454
EcoT22I ATGCAT 1 cut(s) 330
FaeI CATG 3 cut(s) 209, 399, 512
FaiI YATR 6 cut(s) 66, 200, 207, 374, 397, 510
FatI CATG 3 cut(s) 205, 395, 508
FauI CCCGC 1 cut(s) 140
FokI GGATG 1 cut(s) 224
FspBI CTAG 3 cut(s) 260, 266, 526
GlaI GCGC 1 cut(s) 62
GsaI CCCAGC 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 64
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 111
HhaI GCGC 1 cut(s) 63
Hin1II CATG 3 cut(s) 209, 399, 512
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 2 cut(s) 85, 166
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 378, 482
Hpy188I TCNGA 4 cut(s) 15, 81, 234, 361
Hpy188III TCNNGA 3 cut(s) 183, 266, 475
Hpy8I GTNNAC 2 cut(s) 378, 482
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 215, 287, 323, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 32, 35
HpySE526I ACGT 1 cut(s) 54
Hsp92II CATG 3 cut(s) 209, 399, 512
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 5 cut(s) 40, 115, 124, 202, 340
LmnI GCTCC 2 cut(s) 73, 389
Lsp1109I GCAGC 9 cut(s) 38, 41, 47, 234, 291, 299, 304, 307, 404
LweI GCATC 1 cut(s) 202
MaeI CTAG 3 cut(s) 260, 266, 526
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 255
MalI GATC 5 cut(s) 42, 117, 126, 204, 342
MbiI CCGCTC 1 cut(s) 492
MboI GATC 5 cut(s) 40, 115, 124, 202, 340
MboII GAAGA 4 cut(s) 168, 171, 175, 221
MflI RGATCY 1 cut(s) 40
MluCI AATT 1 cut(s) 171
MmeI TCCRAC 2 cut(s) 38, 433
MnlI CCTC 7 cut(s) 75, 81, 102, 150, 262, 377, 426
Mph1103I ATGCAT 1 cut(s) 330
MseI TTAA 3 cut(s) 96, 302, 425
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 252, 456
MvaI CCWGG 2 cut(s) 252, 456
MwoI GCNNNNNNNGC 3 cut(s) 29, 32, 35
NdeII GATC 5 cut(s) 40, 115, 124, 202, 340
NlaIII CATG 3 cut(s) 209, 399, 512
NsiI ATGCAT 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PfeI GAWTC 2 cut(s) 85, 166
PshAI GACNNNNGTC 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 250, 454
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 250, 454
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 3 cut(s) 96, 302, 425
Sau3AI GATC 5 cut(s) 40, 115, 124, 202, 340
ScrFI CCNGG 2 cut(s) 252, 456
SetI ASST 5 cut(s) 57, 265, 292, 300, 527
SfaNI GCATC 1 cut(s) 202
SfcI CTRYAG 1 cut(s) 348
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
Sse9I AATT 1 cut(s) 171
SsiI CCGC 7 cut(s) 23, 33, 111, 147, 387, 441, 490
SspMI CTAG 3 cut(s) 260, 266, 526
StyD4I CCNGG 2 cut(s) 250, 454
TaiI ACGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 127, 434
TasI AATT 1 cut(s) 171
TatI WGTACW 1 cut(s) 375
TauI GCSGC 3 cut(s) 26, 35, 492
TfiI GAWTC 2 cut(s) 85, 166
Tru1I TTAA 3 cut(s) 96, 302, 425
Tru9I TTAA 3 cut(s) 96, 302, 425
TscAI CASTG 1 cut(s) 289
TseI GCWGC 9 cut(s) 26, 29, 35, 222, 279, 287, 317, 320, 392
TspDTI ATGAA 1 cut(s) 450
TspRI CASTG 1 cut(s) 289
XapI RAATTY 1 cut(s) 171
XbaI TCTAGA 1 cut(s) 265
XspI CTAG 3 cut(s) 260, 266, 526
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.