AT3G07870

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014360
Physical Location & Seq
Forward (+)
2510570 .. 2512479
1910 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07870.1

Sequence Viewer

Length: 1254 bp
ATGGCTTCAGAGAAGAGTTTCAAGAAGAGAAAGATCACCGATGATGTAGACGGAGTAGGAGTAGGAGGAGGACTAGAATCCCTTCCCGAAGATATCATCGCCGACATATTCTCTCGCCTACCAATCTCCTCCATAGCTCGGCTTATGTTCGTTTGCAGATCTTGGAGATCTGTTTTGACTCAACACGGTCGTCTCTCTTCTTCTTCTTCTTCCCCGACAAAGCCATGTCTTCTCCTTCACTGCGATTCGCCAATACGCAACGGTCTTCACTTCCTCGACCTATCAGAAGAAGAGAAACGCATCAAGACCAAGAAATTCACATTAAGATTCGCATCTTCCATGCCGGAGTTTGACGTGGTAGGCTCTTGTAACGGTTTGCTCTGTTTGTCTGATTCTCTCTACAACGATTCACTCTACCTTTACAATCCTTTTACTACAAACTCCTTAGAGCTTCCCGAATGTTCCAACAAGTACCACGACCAAGAACTTGTCTTCGGTTTTGGATTCCATGAGATGACAAAGGAATACAAAGTTTTGAAGATAGTTTACTTCAGAGGTAGTAGTAGTAACAATAACGGTATTTACAGAGGTCGTGGTAGAATCCAGTACAAGCAATCAGAGGTTCAGATCTTAACCTTGTCATCAAAAACAACAGATCAATCTTTGTCCTGGAGAAGCTTAGGCAAAGCTCCTTATAAGTTTGTGAAACGTTCATCGGAGGCTTTGGTCAACGGGAGGTTACATTTTGTGACAAGGCCTCGTAGGCACGTGCCGGATCGTAAGTTTGTATCATTTGATCTTGAAGATGAAGAGTTTAAAGAGATTCCTAAACCAGACTGTGGTGGTCTAAACCGGACCAACCATAGACTAGTGAACCTTAAAGGGTGTCTTTGCGCGGTCGTTTATGGTAACTATGGAAAATTAGACATATGGGTTATGAAGACTTATGGAGTCAAAGAATCATGGGGAAAAGAGTATAGCATTGGGACTTACTTGCCAAAGGGGCTAAAGCAAAATCTGGACCGACCAATGTGGATTTGGAAGAACGCTGAGAATGGTAAAGTGGTTCGGGTTTTATGTTTGTTGGAGAATGGAGAGATCTTGTTGGAGTATAAGAGTAGGGTTCTTGTGGCATATGATCCAAAATTGGGTAAATTTAAAGATCTTCTTTTCCATGGGTTGCCTAATTGGTTTCACACTGTTGTTCATGCTGGAACATTGTCTTGGTTTGATACACCCCTTGATTTATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0008150 GO:0008284 GO:0009506 GO:0030054 GO:0042127 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0055044 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

417

Amino Acids

47.68

Weight (kDa)

9.15

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 62 4.8e-10 F-box domain
F-box-like PF12937 25 - 60 1.4e-09 F-box-like
FBA_3 PF08268 89 - 359 5.5e-25 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 105 - 329 1.6e-10 KIB1-4 beta-propeller
FBA_1 PF07734 109 - 349 3.7e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 696
AccB7I CCANNNNNTGG 1 cut(s) 839
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 896
AciI CCGC 1 cut(s) 896
AclI AACGTT 1 cut(s) 709
AclWI GGATC 2 cut(s) 783, 1133
AcsI RAATTY 2 cut(s) 314, 1154
AcuI CTGAAG 1 cut(s) 535
AcvI CACGTG 1 cut(s) 769
AfaI GTAC 2 cut(s) 473, 608
AfiI CCNNNNNNNGG 3 cut(s) 138, 839, 1148
AgsI TTSAA 3 cut(s) 22, 538, 803
AhlI ACTAGT 1 cut(s) 868
AjiI CACGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 668
AjuI GAANNNNNNNTTGG 2 cut(s) 1207, 1239
AluBI AGCT 4 cut(s) 137, 451, 678, 689
AluI AGCT 4 cut(s) 137, 451, 678, 689
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 783, 1133
AoxI GGCC 1 cut(s) 755
ApoI RAATTY 2 cut(s) 314, 1154
Asp700I GAANNNNTTC 2 cut(s) 17, 81
AspLEI GCGC 1 cut(s) 896
AspS9I GGNCC 2 cut(s) 855, 1021
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 2 cut(s) 855, 1021
BarI GAAGNNNNNNTAC 2 cut(s) 530, 562
BbrPI CACGTG 1 cut(s) 769
BbsI GAAGAC 4 cut(s) 221, 257, 484, 947
BciT130I CCWGG 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 868
BfaI CTAG 2 cut(s) 74, 869
BglI GCCNNNNNGGC 2 cut(s) 763, 1003
BglII AGATCT 5 cut(s) 158, 167, 627, 1098, 1162
Bme1390I CCNGG 1 cut(s) 670
Bme18I GGWCC 2 cut(s) 855, 1021
BmgBI CACGTC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 855, 1021
BmrFI CCNGG 1 cut(s) 670
BmsI GCATC 2 cut(s) 309, 341
BpiI GAAGAC 4 cut(s) 221, 257, 484, 947
BpmI CTGGAG 1 cut(s) 691
Bpu10I CCTNAGC 1 cut(s) 679
BsaAI YACGTR 1 cut(s) 769
BsaBI GATNNNNATC 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 1174
BsaWI WCCGGW 1 cut(s) 852
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 3 cut(s) 138, 839, 1148
Bse1I ACTGG 1 cut(s) 604
Bse8I GATNNNNATC 1 cut(s) 331
BseBI CCWGG 1 cut(s) 670
BseDI CCNNGG 1 cut(s) 1174
BseJI GATNNNNATC 1 cut(s) 331
BseLI CCNNNNNNNGG 3 cut(s) 138, 839, 1148
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 1 cut(s) 604
BseRI GAGGAG 2 cut(s) 81, 118
Bsh1236I CGCG 1 cut(s) 896
Bsh1285I CGRYCG 2 cut(s) 190, 900
BshFI GGCC 1 cut(s) 757
BsiEI CGRYCG 2 cut(s) 190, 900
BsiSI CCGG 3 cut(s) 344, 773, 853
BslFI GGGAC 1 cut(s) 1000
BslI CCNNNNNNNGG 3 cut(s) 138, 839, 1148
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 1000
BsnI GGCC 1 cut(s) 757
Bsp19I CCATGG 1 cut(s) 1174
BspACI CCGC 1 cut(s) 896
BspANI GGCC 1 cut(s) 757
BspCNI CTCAG 1 cut(s) 1042
BspFNI CGCG 1 cut(s) 896
BspPI GGATC 2 cut(s) 783, 1133
BsrI ACTGG 1 cut(s) 604
BssECI CCNNGG 1 cut(s) 1174
BssT1I CCWWGG 1 cut(s) 1174
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 6 cut(s) 188, 263, 374, 578, 839, 1201
Bst6I CTCTTC 5 cut(s) 8, 20, 202, 285, 804
BstBAI YACGTR 1 cut(s) 769
BstDEI CTNAG 3 cut(s) 445, 679, 1050
BstDSI CCRYGG 1 cut(s) 1174
BstFNI CGCG 1 cut(s) 896
BstHHI GCGC 1 cut(s) 896
BstMAI GTCTC 1 cut(s) 197
BstMCI CGRYCG 2 cut(s) 190, 900
BstMWI GCNNNNNNNGC 2 cut(s) 763, 1003
BstNI CCWGG 1 cut(s) 670
BstSCI CCNGG 1 cut(s) 668
BstUI CGCG 1 cut(s) 896
BstV2I GAAGAC 4 cut(s) 221, 257, 484, 947
BstX2I RGATCY 5 cut(s) 158, 167, 627, 1098, 1162
BstYI RGATCY 5 cut(s) 158, 167, 627, 1098, 1162
BsuRI GGCC 1 cut(s) 757
BtgI CCRYGG 1 cut(s) 1174
BtgZI GCGATG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 238, 1197
CfoI GCGC 1 cut(s) 896
Cfr13I GGNCC 2 cut(s) 855, 1021
Csp6I GTAC 2 cut(s) 472, 607
CviAII CATG 6 cut(s) 225, 340, 509, 963, 1175, 1208
CviQI GTAC 2 cut(s) 472, 607
DdeI CTNAG 3 cut(s) 445, 679, 1050
DraI TTTAAA 2 cut(s) 817, 1159
Eam1104I CTCTTC 5 cut(s) 8, 20, 202, 285, 804
EarI CTCTTC 5 cut(s) 8, 20, 202, 285, 804
Eco130I CCWWGG 1 cut(s) 1174
Eco147I AGGCCT 1 cut(s) 757
Eco32I GATATC 1 cut(s) 94
Eco47I GGWCC 2 cut(s) 855, 1021
Eco57I CTGAAG 1 cut(s) 535
Eco72I CACGTG 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 668
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 1174
ErhI CCWWGG 1 cut(s) 1174
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 6 cut(s) 228, 343, 512, 966, 1178, 1211
FalI AAGNNNNNCTT 4 cut(s) 873, 905, 1152, 1184
FaqI GGGAC 1 cut(s) 1000
FatI CATG 6 cut(s) 224, 339, 508, 962, 1174, 1207
FauNDI CATATG 2 cut(s) 929, 1135
FblI GTMKAC 1 cut(s) 48
FspBI CTAG 2 cut(s) 74, 869
GlaI GCGC 1 cut(s) 895
GsuI CTGGAG 1 cut(s) 691
HaeIII GGCC 1 cut(s) 757
HapII CCGG 3 cut(s) 344, 773, 853
HhaI GCGC 1 cut(s) 896
Hin1II CATG 6 cut(s) 228, 343, 512, 966, 1178, 1211
Hin6I GCGC 1 cut(s) 894
HinP1I GCGC 1 cut(s) 894
HincII GTYRAC 1 cut(s) 730
HindII GTYRAC 1 cut(s) 730
HindIII AAGCTT 1 cut(s) 676
HpaII CCGG 3 cut(s) 344, 773, 853
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 4 cut(s) 49, 547, 730, 874
Hpy188I TCNGA 7 cut(s) 10, 286, 391, 554, 619, 627, 718
Hpy188III TCNNGA 6 cut(s) 22, 86, 304, 455, 800, 1019
Hpy8I GTNNAC 4 cut(s) 49, 547, 730, 874
HpyAV CCTTC 2 cut(s) 92, 245
HpyCH4III ACNGT 6 cut(s) 188, 263, 374, 578, 839, 1201
HpyCH4IV ACGT 3 cut(s) 354, 709, 768
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 763, 1003
HpyF3I CTNAG 3 cut(s) 445, 679, 1050
HpySE526I ACGT 3 cut(s) 354, 709, 768
Hsp92II CATG 6 cut(s) 228, 343, 512, 966, 1178, 1211
HspAI GCGC 1 cut(s) 894
LmnI GCTCC 1 cut(s) 694
LpnPI CCDG 9 cut(s) 357, 617, 655, 682, 786, 846, 866, 1004, 1197
LweI GCATC 2 cut(s) 309, 341
MaeI CTAG 2 cut(s) 74, 869
MaeII ACGT 3 cut(s) 354, 709, 768
MaeIII GTNAC 5 cut(s) 368, 566, 738, 748, 908
MflI RGATCY 5 cut(s) 158, 167, 627, 1098, 1162
MluCI AATT 5 cut(s) 314, 920, 1145, 1154, 1186
MlyI GAGTC 2 cut(s) 172, 960
MmeI TCCRAC 3 cut(s) 489, 1065, 1086
MroXI GAANNNNTTC 2 cut(s) 17, 81
MseI TTAA 5 cut(s) 323, 632, 816, 879, 1158
MspI CCGG 3 cut(s) 344, 773, 853
MspR9I CCNGG 1 cut(s) 670
MvaI CCWGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 896
MwoI GCNNNNNNNGC 2 cut(s) 763, 1003
NcoI CCATGG 1 cut(s) 1174
NdeI CATATG 2 cut(s) 929, 1135
NlaIII CATG 6 cut(s) 228, 343, 512, 966, 1178, 1211
NmeAIII GCCGAG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 748
PceI AGGCCT 1 cut(s) 757
PdmI GAANNNNTTC 2 cut(s) 17, 81
PfeI GAWTC 9 cut(s) 77, 245, 327, 392, 407, 504, 600, 823, 959
PflMI CCANNNNNTGG 1 cut(s) 839
PfoI TCCNGGA 1 cut(s) 668
PleI GAGTC 2 cut(s) 172, 959
PmaCI CACGTG 1 cut(s) 769
PmlI CACGTG 1 cut(s) 769
PpsI GAGTC 2 cut(s) 172, 959
Ppu21I YACGTR 1 cut(s) 769
PsiI TTATAA 1 cut(s) 696
Psp1406I AACGTT 1 cut(s) 709
Psp6I CCWGG 1 cut(s) 668
PspCI CACGTG 1 cut(s) 769
PspGI CCWGG 1 cut(s) 668
PspPI GGNCC 2 cut(s) 855, 1021
PsuI RGATCY 5 cut(s) 158, 167, 627, 1098, 1162
RsaI GTAC 2 cut(s) 473, 608
RsaNI GTAC 2 cut(s) 472, 607
SaqAI TTAA 5 cut(s) 323, 632, 816, 879, 1158
Sau96I GGNCC 2 cut(s) 855, 1021
SchI GAGTC 2 cut(s) 172, 960
ScrFI CCNGG 1 cut(s) 670
SfaNI GCATC 2 cut(s) 309, 341
SinI GGWCC 2 cut(s) 855, 1021
SpeI ACTAGT 1 cut(s) 868
Sse9I AATT 5 cut(s) 314, 920, 1145, 1154, 1186
SseBI AGGCCT 1 cut(s) 757
SsiI CCGC 1 cut(s) 896
SspMI CTAG 2 cut(s) 74, 869
StuI AGGCCT 1 cut(s) 757
StyD4I CCNGG 1 cut(s) 668
StyI CCWWGG 1 cut(s) 1174
TaaI ACNGT 6 cut(s) 188, 263, 374, 578, 839, 1201
TaiI ACGT 3 cut(s) 357, 712, 771
TaqI TCGA 1 cut(s) 276
TaqII GACCGA 1 cut(s) 1038
TasI AATT 5 cut(s) 314, 920, 1145, 1154, 1186
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 9 cut(s) 77, 245, 327, 392, 407, 504, 600, 823, 959
Tru1I TTAA 5 cut(s) 323, 632, 816, 879, 1158
Tru9I TTAA 5 cut(s) 323, 632, 816, 879, 1158
TscAI CASTG 2 cut(s) 245, 1204
TseFI GTSAC 1 cut(s) 748
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 4 cut(s) 702, 822, 953, 1196
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 245, 1204
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 2 cut(s) 855, 1021
XapI RAATTY 2 cut(s) 314, 1154
XcmI CCANNNNNNNNNTGG 1 cut(s) 1035
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 2 cut(s) 17, 81
XspI CTAG 2 cut(s) 74, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.