MD11G1173200.v1.1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014360
Physical Location & Seq
Forward (+)
19985729 .. 19986169
441 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1173200.v1.1.491

Sequence Viewer

Length: 441 bp
ATGGATATCATAAACAAAAATCCACACAAACAAATCCACGTTTATTCCTGCGTCCAAGTTTTAACTACTCTTGGGTCAAATGCTTGGAGAAGTTCAGTATGTGTTCTTTGGAAGCTCGAGCAAGGACCAGCCGAGGCATTACTCAACGGTGCTGTTCATTGGGTGACTACTCGACATAAACATCAACCTGGTCCTGGTTTGCATATTGTTTCTTTTAATGTAGCTGTGGAAAAGTTTAAGGAGATCGAACGTCCAGGTTGTGGAAGCCTCGACATTTGCAATTTTCATCTTGTGGTCATATATGGGTGTCTCTCTGCTGTTGTTTGTCATGACCGCGGACAAATTGATATATGGGTGATGAAAGAGTATGGTGTAAAGGAGTCTTGGAAGAAAGAGTATGTAATCAGGGATCGTTTGTTTAGAAGCCTAAGTCAAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

147

Amino Acids

16.69

Weight (kDa)

8.96

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 13 - 137 1.3e-10 F-box associated beta propeller domain
FBA_1 PF07734 24 - 134 5.6e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 260
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 334, 336
AclWI GGATC 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 194, 260
AjnI CCWGG 3 cut(s) 187, 193, 253
AluBI AGCT 2 cut(s) 115, 224
AluI AGCT 2 cut(s) 115, 224
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 1 cut(s) 417
Ama87I CYCGRG 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 125, 191
AsuHPI GGTGA 2 cut(s) 175, 367
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 2 cut(s) 125, 191
BciT130I CCWGG 3 cut(s) 189, 195, 255
BcoDI GTCTC 1 cut(s) 314
Bme1390I CCNGG 3 cut(s) 189, 195, 255
Bme18I GGWCC 2 cut(s) 125, 191
BmeT110I CYCGRG 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 125, 191
BmrFI CCNGG 3 cut(s) 189, 195, 255
BsaJI CCNNGG 2 cut(s) 132, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 260
BseBI CCWGG 3 cut(s) 189, 195, 255
BseDI CCNNGG 2 cut(s) 132, 334
BseLI CCNNNNNNNGG 2 cut(s) 194, 260
Bsh1236I CGCG 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 194, 260
BsmAI GTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 2 cut(s) 243, 409
BspACI CCGC 2 cut(s) 334, 336
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 328
BspPI GGATC 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 132, 334
BssMI GATC 2 cut(s) 243, 409
Bst2UI CCWGG 3 cut(s) 189, 195, 255
Bst4CI ACNGT 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 428
BstDSI CCRYGG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 2 cut(s) 246, 412
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 243, 409
BstNI CCWGG 3 cut(s) 189, 195, 255
BstSCI CCNGG 3 cut(s) 187, 193, 253
BstUI CGCG 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 334
CciI TCATGA 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 125, 191
Cfr42I CCGCGG 1 cut(s) 337
CseI GACGC 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 187
CviAII CATG 1 cut(s) 329
CviJI RGCY 5 cut(s) 115, 131, 224, 267, 426
CviKI_1 RGCY 5 cut(s) 115, 131, 224, 267, 426
DdeI CTNAG 1 cut(s) 428
DpnI GATC 2 cut(s) 245, 411
DpnII GATC 2 cut(s) 243, 409
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 125, 191
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 3 cut(s) 187, 193, 253
EcoRV GATATC 1 cut(s) 7
FaeI CATG 1 cut(s) 332
FatI CATG 1 cut(s) 328
HgaI GACGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 332
HinfI GANTC 1 cut(s) 380
HphI GGTGA 2 cut(s) 175, 367
Hpy188III TCNNGA 1 cut(s) 329
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 2 cut(s) 39, 250
HpyCH4V TGCA 2 cut(s) 202, 279
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 2 cut(s) 39, 250
Hsp92II CATG 1 cut(s) 332
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 2 cut(s) 243, 409
LpnPI CCDG 9 cut(s) 61, 141, 174, 180, 201, 207, 240, 267, 391
MabI ACCWGGT 1 cut(s) 187
MaeII ACGT 2 cut(s) 39, 250
MaeIII GTNAC 1 cut(s) 163
MalI GATC 2 cut(s) 245, 411
MboI GATC 2 cut(s) 243, 409
MboII GAAGA 1 cut(s) 400
MluCI AATT 2 cut(s) 280, 342
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 2 cut(s) 127, 278
MseI TTAA 3 cut(s) 62, 216, 237
MspA1I CMGCKG 1 cut(s) 336
MspR9I CCNGG 3 cut(s) 189, 195, 255
MvaI CCWGG 3 cut(s) 189, 195, 255
MvnI CGCG 1 cut(s) 336
NdeII GATC 2 cut(s) 243, 409
NlaIII CATG 1 cut(s) 332
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 163
PaeR7I CTCGAG 1 cut(s) 116
PagI TCATGA 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 260
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
Psp6I CCWGG 3 cut(s) 187, 193, 253
PspGI CCWGG 3 cut(s) 187, 193, 253
PspPI GGNCC 2 cut(s) 125, 191
PspXI VCTCGAGB 1 cut(s) 116
SacII CCGCGG 1 cut(s) 337
SaqAI TTAA 3 cut(s) 62, 216, 237
Sau3AI GATC 2 cut(s) 243, 409
Sau96I GGNCC 2 cut(s) 125, 191
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 3 cut(s) 189, 195, 255
SetI ASST 6 cut(s) 42, 117, 190, 226, 253, 259
SexAI ACCWGGT 1 cut(s) 187
Sfr274I CTCGAG 1 cut(s) 116
Sfr303I CCGCGG 1 cut(s) 337
SgrBI CCGCGG 1 cut(s) 337
SinI GGWCC 2 cut(s) 125, 191
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 280, 342
SsiI CCGC 2 cut(s) 334, 336
StyD4I CCNGG 3 cut(s) 187, 193, 253
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 2 cut(s) 42, 253
TaqI TCGA 4 cut(s) 117, 172, 246, 270
TasI AATT 2 cut(s) 280, 342
Tru1I TTAA 3 cut(s) 62, 216, 237
Tru9I TTAA 3 cut(s) 62, 216, 237
TseFI GTSAC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 146, 275, 374
Van91I CCANNNNNTGG 1 cut(s) 260
VpaK11BI GGWCC 2 cut(s) 125, 191
XhoI CTCGAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.