Rmu_co8465031.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8465031.1
OG0014360
Physical Location & Seq
Reverse (-)
2 .. 1118
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8465031.1_g000001.1.cds

Sequence Viewer

Length: 1117 bp
atggactcagattctaggaggaggagaaaccaaggagaagagcaatcagtaacttggctggaaagtctcccaactgaaatcatcatcgacatactttccaggcttcctctttcctctgcggtgcaattcgggtatgtatgccgctcatggcgtgtactagcacatagtcaccttgatactttgcataggcagcatagctctaacatagttgcaagcctaggcctcatcctgcactgtgatcatcccattaaaaatgagctttactttgtcgattacccttccaaccatgatggcaagaagatagcagaaaagaaaattaacaaaccattctgtgctttaatgcctgagtttgatgtggtaggctcatttgatggtttgctctgcttagctgatgcagtgaacaatgttgcactatacatatataatccattcactaaggattatatacagctgcctaggaccacccagtatcctaatcgacatagacatgtggtatttggatttgggtatagtcccttgactgaagtatacaaggtagtgaagataacctattacaatggtcatggagagtactatggttatagagattgccggacttactacagtaaatttccccgactatccgacgttcagattttcacaacaggaagacctatctggagaagtataggcagtgcatctcactacttggattcgtcaccagcacagacattggtcaatggaagacttcattgggccacttggacctcacgcagacagcgatctggtggccagctcatctcgtttgacctatatgatgagcaattcagagaggttccaacgcctgagtttggaagcaggaggtgtattcatcctctggttgtaggaggttgtcttgctgcagttggtttgtccataatttggcaattagatatatgggttatgaaggcgtatggtgtgagagaatcatgggtcagagaatggagcataggaaggcacattccgcagacactggaacaaaagcttgatgacgaggttggcaactaccgaccctggacgatatcccgtatagcagacaaagcaagagatgtggttattcgggttttgaacgtttcggagagtggtcatatcttgttgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0008150 GO:0008284 GO:0009506 GO:0030054 GO:0042127 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0055044 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

372

Amino Acids

42.89

Weight (kDa)

8.72

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 900
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 528
AciI CCGC 3 cut(s) 119, 142, 983
AclI AACGTT 1 cut(s) 1089
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 2 cut(s) 156, 572
AfiI CCNNNNNNNGG 2 cut(s) 830, 900
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 1 cut(s) 1087
AjnI CCWGG 2 cut(s) 98, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 715, 747
AluBI AGCT 6 cut(s) 198, 259, 389, 451, 775, 1003
AluI AGCT 6 cut(s) 198, 259, 389, 451, 775, 1003
Alw26I GTCTC 1 cut(s) 71
AlwNI CAGNNNCTG 1 cut(s) 991
AoxI GGCC 3 cut(s) 220, 735, 769
ApeKI GCWGC 3 cut(s) 190, 451, 878
ApoI RAATTY 1 cut(s) 608
AspA2I CCTAGG 2 cut(s) 217, 455
AspS9I GGNCC 3 cut(s) 459, 735, 744
AsuHPI GGTGA 2 cut(s) 161, 690
AvaII GGWCC 2 cut(s) 459, 744
AvrII CCTAGG 2 cut(s) 217, 455
BalI TGGCCA 1 cut(s) 771
BbsI GAAGAC 2 cut(s) 655, 730
BbvI GCAGC 3 cut(s) 202, 438, 865
BccI CCATC 2 cut(s) 284, 365
BciT130I CCWGG 2 cut(s) 100, 1033
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 4 cut(s) 15, 158, 218, 456
BfmI CTRYAG 2 cut(s) 601, 879
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 4 cut(s) 142, 191, 452, 879
BlnI CCTAGG 2 cut(s) 217, 455
BlpI GCTNAGC 1 cut(s) 385
BlsI GCNGC 4 cut(s) 143, 192, 453, 880
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 100, 1033
Bme18I GGWCC 2 cut(s) 459, 744
BmgT120I GGNCC 3 cut(s) 459, 735, 744
BmiI GGNNCC 1 cut(s) 816
BmrFI CCNGG 2 cut(s) 100, 1033
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 2 cut(s) 382, 686
BmuI ACTGGG 1 cut(s) 460
BoxI GACNNNNGTC 1 cut(s) 713
BpiI GAAGAC 2 cut(s) 655, 730
BpmI CTGGAG 1 cut(s) 679
Bpu1102I GCTNAGC 1 cut(s) 385
BsaJI CCNNGG 4 cut(s) 31, 217, 455, 1031
Bsc4I CCNNNNNNNGG 2 cut(s) 830, 900
Bse1I ACTGG 2 cut(s) 466, 996
BseBI CCWGG 2 cut(s) 100, 1033
BseDI CCNNGG 4 cut(s) 31, 217, 455, 1031
BseGI GGATG 3 cut(s) 225, 241, 850
BseLI CCNNNNNNNGG 2 cut(s) 830, 900
BseMII CTCAG 3 cut(s) 21, 336, 816
BseNI ACTGG 2 cut(s) 466, 996
BseRI GAGGAG 2 cut(s) 34, 37
BseXI GCAGC 3 cut(s) 202, 438, 865
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 3 cut(s) 222, 737, 771
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 2 cut(s) 830, 900
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 3 cut(s) 222, 737, 771
Bsp143I GATC 2 cut(s) 238, 761
Bsp1720I GCTNAGC 1 cut(s) 385
BspACI CCGC 3 cut(s) 119, 142, 983
BspANI GGCC 3 cut(s) 222, 737, 771
BspCNI CTCAG 3 cut(s) 20, 337, 817
BspLI GGNNCC 1 cut(s) 816
BspMAI CTGCAG 1 cut(s) 883
BspQI GCTCTTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 2 cut(s) 466, 996
BssECI CCNNGG 4 cut(s) 31, 217, 455, 1031
BssMI GATC 2 cut(s) 238, 761
BssNAI GTATAC 1 cut(s) 529
BssT1I CCWWGG 3 cut(s) 31, 217, 455
Bst1107I GTATAC 1 cut(s) 529
Bst2UI CCWGG 2 cut(s) 100, 1033
Bst4CI ACNGT 2 cut(s) 236, 605
Bst6I CTCTTC 1 cut(s) 33
BstC8I GCNNGC 2 cut(s) 214, 773
BstDEI CTNAG 5 cut(s) 7, 345, 385, 435, 825
BstF5I GGATG 3 cut(s) 225, 241, 850
BstKTI GATC 2 cut(s) 241, 764
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 2 cut(s) 238, 761
BstMWI GCNNNNNNNGC 3 cut(s) 190, 982, 1058
BstNI CCWGG 2 cut(s) 100, 1033
BstNSI RCATGY 1 cut(s) 491
BstPAI GACNNNNGTC 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 98, 1031
BstSFI CTRYAG 2 cut(s) 601, 879
BstV1I GCAGC 3 cut(s) 202, 438, 865
BstV2I GAAGAC 2 cut(s) 655, 730
BstZ17I GTATAC 1 cut(s) 529
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 3 cut(s) 222, 737, 771
BtsCI GGATG 3 cut(s) 225, 241, 850
BtsI GCAGTG 2 cut(s) 402, 679
BtsIMutI CAGTG 4 cut(s) 232, 402, 679, 989
Cac8I GCNNGC 2 cut(s) 214, 773
CaiI CAGNNNCTG 1 cut(s) 991
Cfr13I GGNCC 3 cut(s) 459, 735, 744
Csp6I GTAC 2 cut(s) 155, 571
CspCI CAANNNNNGTGG 2 cut(s) 1050, 1085
CviAII CATG 5 cut(s) 147, 287, 488, 563, 948
CviQI GTAC 2 cut(s) 155, 571
DdeI CTNAG 5 cut(s) 7, 345, 385, 435, 825
DpnI GATC 2 cut(s) 240, 763
DpnII GATC 2 cut(s) 238, 761
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 31, 217, 455
Eco147I AGGCCT 1 cut(s) 222
Eco32I GATATC 1 cut(s) 1041
Eco47I GGWCC 2 cut(s) 459, 744
Eco57I CTGAAG 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 98, 1031
EcoRV GATATC 1 cut(s) 1041
EcoT14I CCWWGG 3 cut(s) 31, 217, 455
ErhI CCWWGG 3 cut(s) 31, 217, 455
FaeI CATG 5 cut(s) 150, 290, 491, 566, 951
FaqI GGGAC 1 cut(s) 498
FatI CATG 5 cut(s) 146, 286, 487, 562, 947
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 142, 191, 452, 879
FokI GGATG 3 cut(s) 212, 228, 837
Fsp4HI GCNGC 4 cut(s) 142, 191, 452, 879
FspBI CTAG 4 cut(s) 15, 158, 218, 456
GluI GCNGC 4 cut(s) 142, 191, 452, 879
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 3 cut(s) 222, 737, 771
HapII CCGG 1 cut(s) 592
Hin1II CATG 5 cut(s) 150, 290, 491, 566, 951
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 4 cut(s) 5, 11, 692, 944
HpaII CCGG 1 cut(s) 592
HphI GGTGA 2 cut(s) 161, 690
Hpy166II GTNNAC 3 cut(s) 155, 400, 529
Hpy188I TCNGA 6 cut(s) 10, 625, 633, 809, 956, 1096
Hpy188III TCNNGA 1 cut(s) 658
Hpy8I GTNNAC 3 cut(s) 155, 400, 529
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 3 cut(s) 288, 919, 966
HpyCH4III ACNGT 2 cut(s) 236, 605
HpyCH4IV ACGT 2 cut(s) 627, 1089
HpyCH4V TGCA 8 cut(s) 124, 184, 212, 232, 395, 410, 677, 881
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 982, 1058
HpyF3I CTNAG 5 cut(s) 7, 345, 385, 435, 825
HpySE526I ACGT 2 cut(s) 627, 1089
Hsp92II CATG 5 cut(s) 150, 290, 491, 566, 951
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 238, 761
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 963
Lsp1109I GCAGC 3 cut(s) 202, 438, 865
LweI GCATC 2 cut(s) 382, 686
MaeI CTAG 4 cut(s) 15, 158, 218, 456
MaeII ACGT 2 cut(s) 627, 1089
MaeIII GTNAC 3 cut(s) 49, 167, 696
MalI GATC 2 cut(s) 240, 763
MbiI CCGCTC 1 cut(s) 144
MboI GATC 2 cut(s) 238, 761
MboII GAAGA 5 cut(s) 50, 310, 553, 660, 735
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 6 cut(s) 125, 315, 608, 803, 897, 905
MluNI TGGCCA 1 cut(s) 771
MmeI TCCRAC 3 cut(s) 306, 648, 842
Mox20I TGGCCA 1 cut(s) 771
MscI TGGCCA 1 cut(s) 771
MseI TTAA 3 cut(s) 249, 318, 338
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 771
MspA1I CMGCKG 1 cut(s) 451
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 2 cut(s) 100, 1033
MvaI CCWGG 2 cut(s) 100, 1033
MwoI GCNNNNNNNGC 3 cut(s) 190, 982, 1058
NdeII GATC 2 cut(s) 238, 761
NlaIII CATG 5 cut(s) 150, 290, 491, 566, 951
NlaIV GGNNCC 1 cut(s) 816
NmuCI GTSAC 2 cut(s) 167, 696
NspI RCATGY 1 cut(s) 491
PceI AGGCCT 1 cut(s) 222
PciI ACATGT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 757
PfeI GAWTC 3 cut(s) 11, 692, 944
PflMI CCANNNNNTGG 1 cut(s) 900
PkrI GCNGC 4 cut(s) 143, 192, 453, 880
PscI ACATGT 1 cut(s) 487
PshAI GACNNNNGTC 1 cut(s) 713
Psp1406I AACGTT 1 cut(s) 1089
Psp6I CCWGG 2 cut(s) 98, 1031
PspGI CCWGG 2 cut(s) 98, 1031
PspN4I GGNNCC 1 cut(s) 816
PspPI GGNCC 3 cut(s) 459, 735, 744
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 991
PvuII CAGCTG 1 cut(s) 451
RsaI GTAC 2 cut(s) 156, 572
RsaNI GTAC 2 cut(s) 155, 571
RseI CAYNNNNRTG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 249, 318, 338
SatI GCNGC 4 cut(s) 142, 191, 452, 879
Sau3AI GATC 2 cut(s) 238, 761
Sau96I GGNCC 3 cut(s) 459, 735, 744
ScaI AGTACT 1 cut(s) 572
ScrFI CCNGG 2 cut(s) 100, 1033
SfaNI GCATC 2 cut(s) 382, 686
SfcI CTRYAG 2 cut(s) 601, 879
SinI GGWCC 2 cut(s) 459, 744
SmiMI CAYNNNNRTG 1 cut(s) 486
Sse9I AATT 6 cut(s) 125, 315, 608, 803, 897, 905
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 3 cut(s) 119, 142, 983
SspMI CTAG 4 cut(s) 15, 158, 218, 456
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 98, 1031
StyI CCWWGG 3 cut(s) 31, 217, 455
TaaI ACNGT 2 cut(s) 236, 605
TaiI ACGT 2 cut(s) 630, 1092
TaqI TCGA 3 cut(s) 87, 270, 478
TasI AATT 6 cut(s) 125, 315, 608, 803, 897, 905
TatI WGTACW 2 cut(s) 154, 570
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 3 cut(s) 11, 692, 944
Tru1I TTAA 3 cut(s) 249, 318, 338
Tru9I TTAA 3 cut(s) 249, 318, 338
TscAI CASTG 4 cut(s) 239, 402, 679, 996
TseFI GTSAC 2 cut(s) 167, 696
TseI GCWGC 3 cut(s) 190, 451, 878
Tsp45I GTSAC 2 cut(s) 167, 696
TspDTI ATGAA 3 cut(s) 719, 839, 938
TspRI CASTG 4 cut(s) 239, 402, 679, 996
Van91I CCANNNNNTGG 1 cut(s) 900
VpaK11BI GGWCC 2 cut(s) 459, 744
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 491
XmaJI CCTAGG 2 cut(s) 217, 455
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 4 cut(s) 15, 158, 218, 456
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.