Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014360

Physical Location & Seq

Genomic Coordinates Forward (+)

11851478 .. 11852647

Gene Structure 1170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G145000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAAAGCTTCCCCTTGACGTTGCCCTCGACATATTTTCCAGGCTGCCAATCACTTCCCTAATGCAAATCAAGTGTGTGTGTCGATCTTGGCGTGCCAAAGGCAAAGACCCTCGGCTCCTTATAATGTACCAGGCCATAGCAAATAAGAGAAACCCATGTCTCATTCTTCACTGCGATTCTCCCATCCAGAACAATTTACATTTCGTTGAAAGCAGCCAAATTAGACATCATGAGCACTACACGAACAATGCGAGAAGGATCAATGCACAAATCCGATATGTTGCACCCGAGTTCCATGTTGTTGAAGTAGCATTCGGATTTGGTTTCCACCCCACCACAATGGAGTACAAGATTGTTTGGATATCATACTTAAACAACAACTACCAAGGTCACCAGCTGCCTCTACAGTCCCGTGTCCAAGTTTTAACTCTTGGCTCGAACGCTTGGAGAATTTCGGTCTCTCCTCGTTGCAAGCTTGAGCAAGGATCATCCGAGGCATTAGTCAACGGTAATCTTCACTGGGTGACAACGCGCCACAAACATCGACCCGGGAGATTGAGTCCGGGATGTCGAAGTCCTAACATATGCAATTTTCATCTTGTGGTCTTAGGAGGGTGTCTCTCTGCTGTTGTTTGTCATGATGATGGAAAAATTGATATATGGATGATGAAAGAATATGGTTCAAAGGAGTCTTGGACCAAGGAATATGTAATTGGGGAGAGTTTGTTTAGAAGCTTAAGAGAAAGAAGAAATTCTCGTCCAAGCTCAAGAATATGGAAGAGGCCAACTCTAAGCAAAGGTAAAATACAGGTTTTATGCTCCCTGAGGAATGGAGAGATATTGCTAGAGTATGAGAATGGAGTCTTGGTTTCATATAACGCCGAAAGCGAGGAGTTTCAACAACTTATGATTCATGAACTTCCCAAGTGGTTTTGTACAATTGTTCATTTTGAAACCCTTTATCCCGCTGATGTTATTCTTCAAATGCAGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

333

Amino Acids

38.44

Weight (kDa)

9.17

Isoelectric Point (pI)

49.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07870
malus_domestica	MD09G1119500.v1.1 MD11G1173200.v1.1
prunus_persica	Prupe.3G204700_v2.0.a1 Prupe.6G145000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213431
rosa_multiflora	Rmu_co8465031.1_g000001 Rmu_sc0013012.1_g000002 Rmu_ssc0000262.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092490 Rroxscaffold_3G00245910
rosa_rugosa	Rorug07G0142300
rosa_samantha	Rh7AG274200 Rh7BG269500 Rh7CG293300 Rh7DG281700
rosa_wichuraiana	Rw7G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AccII	CGCG	1 cut(s)	535
AciI	CCGC	1 cut(s)	969
AclWI	GGATC	2 cut(s)	269, 496
AcsI	RAATTY	2 cut(s)	453, 754
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	3 cut(s)	131, 350, 940
AflII	CTTAAG	1 cut(s)	739
AgsI	TTSAA	6 cut(s)	212, 308, 687, 902, 956, 986
AjnI	CCWGG	2 cut(s)	41, 132
AjuI	GAANNNNNNNTTGG	4 cut(s)	699, 731, 851, 883
AluBI	AGCT	6 cut(s)	10, 400, 478, 738, 768, 994
AluI	AGCT	6 cut(s)	10, 400, 478, 738, 768, 994
Alw21I	GWGCWC	1 cut(s)	240
Alw26I	GTCTC	3 cut(s)	167, 466, 626
AlwI	GGATC	2 cut(s)	269, 496
Ama87I	CYCGRG	2 cut(s)	290, 551
AoxI	GGCC	2 cut(s)	135, 785
ApeKI	GCWGC	4 cut(s)	46, 216, 400, 991
ApoI	RAATTY	2 cut(s)	453, 754
Asp700I	GAANNNNTTC	2 cut(s)	9, 754
AspLEI	GCGC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	699
AsuC2I	CCSGG	3 cut(s)	552, 553, 567
AsuHPI	GGTGA	2 cut(s)	386, 538
AvaI	CYCGRG	2 cut(s)	290, 551
AvaII	GGWCC	1 cut(s)	699
AxyI	CCTNAGG	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	3 cut(s)	33, 228, 387
BccI	CCATC	2 cut(s)	194, 641
BciT130I	CCWGG	2 cut(s)	43, 134
BcnI	CCSGG	3 cut(s)	552, 553, 567
BcoDI	GTCTC	3 cut(s)	167, 466, 626
BfaI	CTAG	1 cut(s)	848
BfmI	CTRYAG	2 cut(s)	407, 995
BfrI	CTTAAG	1 cut(s)	739
BisI	GCNGC	4 cut(s)	47, 217, 401, 992
BlsI	GCNGC	4 cut(s)	48, 218, 402, 993
Bme1390I	CCNGG	5 cut(s)	43, 134, 552, 553, 567
Bme18I	GGWCC	1 cut(s)	699
BmeT110I	CYCGRG	2 cut(s)	290, 551
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	5 cut(s)	43, 134, 552, 553, 567
BmrI	ACTGGG	1 cut(s)	532
BmuI	ACTGGG	1 cut(s)	532
BplI	GAGNNNNNCTC	4 cut(s)	606, 638, 775, 807
BpuEI	CTTGAG	2 cut(s)	500, 754
BpuMI	CCSGG	3 cut(s)	552, 553, 567
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	5 cut(s)	113, 388, 495, 551, 702
BsaXI	ACNNNNNCTCC	6 cut(s)	547, 577, 713, 743, 855, 885
Bse1I	ACTGG	1 cut(s)	527
Bse21I	CCTNAGG	1 cut(s)	827
BseBI	CCWGG	2 cut(s)	43, 134
BseDI	CCNNGG	5 cut(s)	113, 388, 495, 551, 702
BseGI	GGATG	4 cut(s)	186, 491, 575, 672
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	1 cut(s)	527
BseRI	GAGGAG	2 cut(s)	456, 908
BseXI	GCAGC	3 cut(s)	33, 228, 387
Bsh1236I	CGCG	1 cut(s)	535
BshFI	GGCC	2 cut(s)	137, 787
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	2 cut(s)	290, 551
BsiSI	CCGG	2 cut(s)	552, 566
BslFI	GGGAC	1 cut(s)	397
BsmAI	GTCTC	3 cut(s)	167, 466, 626
BsmFI	GGGAC	1 cut(s)	397
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	137, 787
Bso31I	GGTCTC	1 cut(s)	466
BsoBI	CYCGRG	2 cut(s)	290, 551
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	938
Bsp143I	GATC	3 cut(s)	86, 261, 488
BspACI	CCGC	1 cut(s)	969
BspANI	GGCC	2 cut(s)	137, 787
BspCNI	CTCAG	1 cut(s)	819
BspFNI	CGCG	1 cut(s)	535
BspHI	TCATGA	3 cut(s)	232, 640, 916
BspLI	GGNNCC	1 cut(s)	119
BspPI	GGATC	2 cut(s)	269, 496
BspTI	CTTAAG	1 cut(s)	739
BspTNI	GGTCTC	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	938
BsrI	ACTGG	1 cut(s)	527
BssECI	CCNNGG	5 cut(s)	113, 388, 495, 551, 702
BssMI	GATC	3 cut(s)	86, 261, 488
BssT1I	CCWWGG	2 cut(s)	388, 702
Bst2UI	CCWGG	2 cut(s)	43, 134
Bst4CI	ACNGT	2 cut(s)	411, 512
Bst6I	CTCTTC	1 cut(s)	776
BstAFI	CTTAAG	1 cut(s)	739
BstAUI	TGTACA	1 cut(s)	938
BstC8I	GCNNGC	2 cut(s)	96, 476
BstDEI	CTNAG	3 cut(s)	610, 794, 827
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	4 cut(s)	186, 491, 575, 672
BstFNI	CGCG	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	537
BstKTI	GATC	3 cut(s)	89, 264, 491
BstMAI	GTCTC	3 cut(s)	167, 466, 626
BstMBI	GATC	3 cut(s)	86, 261, 488
BstNI	CCWGG	2 cut(s)	43, 134
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	5 cut(s)	41, 132, 550, 551, 565
BstSFI	CTRYAG	2 cut(s)	407, 995
BstUI	CGCG	1 cut(s)	535
BstV1I	GCAGC	3 cut(s)	33, 228, 387
BstXI	CCANNNNNNTGG	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	827
BsuRI	GGCC	2 cut(s)	137, 787
BtsCI	GGATG	4 cut(s)	186, 491, 575, 672
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	172, 520
Cac8I	GCNNGC	2 cut(s)	96, 476
CciI	TCATGA	3 cut(s)	232, 640, 916
CfoI	GCGC	1 cut(s)	537
Cfr13I	GGNCC	1 cut(s)	699
Cfr9I	CCCGGG	1 cut(s)	551
Csp6I	GTAC	3 cut(s)	130, 349, 939
CviAII	CATG	5 cut(s)	159, 233, 299, 641, 917
CviQI	GTAC	3 cut(s)	130, 349, 939
DdeI	CTNAG	3 cut(s)	610, 794, 827
DpnI	GATC	3 cut(s)	88, 263, 490
DpnII	GATC	3 cut(s)	86, 261, 488
DraIII	CACNNNGTG	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
Eco130I	CCWWGG	2 cut(s)	388, 702
Eco31I	GGTCTC	1 cut(s)	466
Eco32I	GATATC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	699
Eco81I	CCTNAGG	1 cut(s)	827
Eco88I	CYCGRG	2 cut(s)	290, 551
Eco91I	GGTNACC	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	41, 132
EcoRV	GATATC	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	388, 702
ErhI	CCWWGG	2 cut(s)	388, 702
FaeI	CATG	5 cut(s)	162, 236, 302, 644, 920
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	5 cut(s)	158, 232, 298, 640, 916
FauI	CCCGC	1 cut(s)	976
FauNDI	CATATG	1 cut(s)	587
Fnu4HI	GCNGC	4 cut(s)	47, 217, 401, 992
FokI	GGATG	4 cut(s)	173, 478, 582, 679
Fsp4HI	GCNGC	4 cut(s)	47, 217, 401, 992
FspBI	CTAG	1 cut(s)	848
GlaI	GCGC	1 cut(s)	536
GluI	GCNGC	4 cut(s)	47, 217, 401, 992
HaeIII	GGCC	2 cut(s)	137, 787
HapII	CCGG	2 cut(s)	552, 566
HhaI	GCGC	1 cut(s)	537
Hin1II	CATG	5 cut(s)	162, 236, 302, 644, 920
Hin6I	GCGC	1 cut(s)	535
HinP1I	GCGC	1 cut(s)	535
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	3 cut(s)	8, 476, 736
HinfI	GANTC	5 cut(s)	179, 562, 692, 864, 913
HpaII	CCGG	2 cut(s)	552, 566
HphI	GGTGA	2 cut(s)	386, 538
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	278, 320, 496
Hpy188III	TCNNGA	5 cut(s)	190, 233, 641, 771, 917
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	2 cut(s)	411, 512
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	6 cut(s)	67, 269, 287, 474, 591, 991
HpyF3I	CTNAG	3 cut(s)	610, 794, 827
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	162, 236, 302, 644, 920
HspAI	GCGC	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	86, 261, 488
LmnI	GCTCC	2 cut(s)	123, 827
Lsp1109I	GCAGC	3 cut(s)	33, 228, 387
MaeI	CTAG	1 cut(s)	848
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	392, 526
MalI	GATC	3 cut(s)	88, 263, 490
MboI	GATC	3 cut(s)	86, 261, 488
MboII	GAAGA	5 cut(s)	161, 509, 762, 793, 974
MfeI	CAATTG	1 cut(s)	942
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	8 cut(s)	196, 222, 453, 592, 654, 714, 754, 942
MlyI	GAGTC	3 cut(s)	571, 701, 873
MnlI	CCTC	9 cut(s)	38, 123, 414, 477, 490, 608, 777, 822, 886
MroXI	GAANNNNTTC	2 cut(s)	9, 754
MseI	TTAA	3 cut(s)	374, 428, 740
MslI	CAYNNNNRTG	2 cut(s)	341, 645
MspA1I	CMGCKG	2 cut(s)	400, 971
MspCI	CTTAAG	1 cut(s)	739
MspI	CCGG	2 cut(s)	552, 566
MspR9I	CCNGG	5 cut(s)	43, 134, 552, 553, 567
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	2 cut(s)	43, 134
MvnI	CGCG	1 cut(s)	535
NciI	CCSGG	3 cut(s)	552, 553, 567
NdeI	CATATG	1 cut(s)	587
NdeII	GATC	3 cut(s)	86, 261, 488
NlaIII	CATG	5 cut(s)	162, 236, 302, 644, 920
NlaIV	GGNNCC	1 cut(s)	119
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	2 cut(s)	392, 526
PagI	TCATGA	3 cut(s)	232, 640, 916
PcsI	WCGNNNNNNNCGW	4 cut(s)	27, 91, 251, 888
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	2 cut(s)	9, 754
PfeI	GAWTC	2 cut(s)	179, 913
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	4 cut(s)	48, 218, 402, 993
PleI	GAGTC	3 cut(s)	570, 700, 872
PpsI	GAGTC	3 cut(s)	570, 700, 872
PsiI	TTATAA	1 cut(s)	125
Psp6I	CCWGG	2 cut(s)	41, 132
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	41, 132
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	699
PvuII	CAGCTG	1 cut(s)	400
RsaI	GTAC	3 cut(s)	131, 350, 940
RsaNI	GTAC	3 cut(s)	130, 349, 939
RseI	CAYNNNNRTG	2 cut(s)	341, 645
SaqAI	TTAA	3 cut(s)	374, 428, 740
SatI	GCNGC	4 cut(s)	47, 217, 401, 992
Sau3AI	GATC	3 cut(s)	86, 261, 488
Sau96I	GGNCC	1 cut(s)	699
SchI	GAGTC	3 cut(s)	571, 701, 873
ScrFI	CCNGG	5 cut(s)	43, 134, 552, 553, 567
SduI	GDGCHC	1 cut(s)	240
SfcI	CTRYAG	2 cut(s)	407, 995
SinI	GGWCC	1 cut(s)	699
SmaI	CCCGGG	1 cut(s)	553
SmiMI	CAYNNNNRTG	2 cut(s)	341, 645
SmlI	CTYRAG	3 cut(s)	479, 739, 769
SmoI	CTYRAG	3 cut(s)	479, 739, 769
Sse9I	AATT	8 cut(s)	196, 222, 453, 592, 654, 714, 754, 942
SsiI	CCGC	1 cut(s)	969
SspMI	CTAG	1 cut(s)	848
StyD4I	CCNGG	5 cut(s)	41, 132, 550, 551, 565
StyI	CCWWGG	2 cut(s)	388, 702
TaaI	ACNGT	2 cut(s)	411, 512
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	5 cut(s)	30, 85, 440, 547, 574
TaqII	GACCGA	1 cut(s)	448
TasI	AATT	8 cut(s)	196, 222, 453, 592, 654, 714, 754, 942
TatI	WGTACW	2 cut(s)	348, 938
TfiI	GAWTC	2 cut(s)	179, 913
Tru1I	TTAA	3 cut(s)	374, 428, 740
Tru9I	TTAA	3 cut(s)	374, 428, 740
TscAI	CASTG	2 cut(s)	179, 527
TseFI	GTSAC	2 cut(s)	392, 526
TseI	GCWGC	4 cut(s)	46, 216, 400, 991
Tsp45I	GTSAC	2 cut(s)	392, 526
TspDTI	ATGAA	6 cut(s)	587, 686, 864, 905, 933, 938
TspMI	CCCGGG	1 cut(s)	551
TspRI	CASTG	2 cut(s)	179, 527
Vha464I	CTTAAG	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	699
XapI	RAATTY	2 cut(s)	453, 754
XmaI	CCCGGG	1 cut(s)	551
XmnI	GAANNNNTTC	2 cut(s)	9, 754
XspI	CTAG	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.