RchiOBHm_Chr7g0213431

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014360
Physical Location & Seq
Reverse (-)
30551706 .. 30552635
930 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19104

Sequence Viewer

Length: 921 bp
ATGCCTGAGTTTGATGTGGTAGGCTCATTTGATGGTTTGCTCTGCTTAGCTGATGCAGTGAACAATGTTGCACTGTACATATATAATCCATTCACTAAGGATTATATACAGCTGCCTAGGACCACCCAGTATCCTAATCGACATAGACATGTGGTATTTGGATTTGGGTATAGTCCCTTGACTGAAGTATACAAGGTAGTGAAGATAACTTATTACAATGGTCATGGAGAGTACTATGGTTATAGAGATTGCCGGACTTACTACAGTAAATTTCCCCGACTATCCGACGTTCAGATTTTCACAACAGGAAGACCTATCTGGAGAAGTATAGGCAGTGCATCTCACTACTTGGATGCGTCACCAGCAGAGACATTGGTCAATGGAAGACTTCATTGGGCCACTTGGACCTCACGCAGACTGCGATCTGGTGGCCAGCTCGTCTCGTTTGACCTATATGATGAGCAATTCAGAGAGGTTCCAACGCCTGAGTTTGGAAGCAGGAGGTGTATTCATCCTCTGGTTGTAGGAGGTTGTCTTGCTGCAGTTGGTTTGTCCATAATTTGGCAGTTAGATATATGGGTTATGAAGGAGTATGGTGTGAGAGAATCATGGGTCAGACAATGGAGCATAGGAAGGCACATTCCGCAGACACTGGAACAAAAGCTTGATGACGAGGTTGGCAACTACCGACCCTGGACGATATCCCGTATAGCAGACAAAGCAAGAGATGTGGTTATTCGGGTTTTGAACGTTTCGGAGAGTGGCCATATCTTGTTGGAGTACAAAAGTAGGGCTCTAGTTCTTTATGACCCAACTAATGGAAAATTTATAGAACTGGAATTTGAAGGGATGCCAAGATGGTTTCAAACTGTTGTTCATCAGGGCAGACTCGATCAAGTTGATACCATTTTTAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0008150 GO:0008284 GO:0009506 GO:0030054 GO:0042127 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0055044 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

306

Amino Acids

35.56

Weight (kDa)

8.25

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 7 - 285 1.6e-20 F-box associated beta propeller domain
FBA_1 PF07734 9 - 209 2.5e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 561, 818
AccI GTMKAC 1 cut(s) 189
AciI CCGC 1 cut(s) 644
AclI AACGTT 1 cut(s) 750
AcoI YGGCCR 2 cut(s) 430, 763
AcsI RAATTY 3 cut(s) 269, 824, 839
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 3 cut(s) 77, 233, 782
AfiI CCNNNNNNNGG 3 cut(s) 491, 561, 818
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 3 cut(s) 748, 845, 866
AjnI CCWGG 1 cut(s) 692
AjuI GAANNNNNNNTTGG 2 cut(s) 376, 408
AluBI AGCT 4 cut(s) 50, 112, 436, 664
AluI AGCT 4 cut(s) 50, 112, 436, 664
Alw26I GTCTC 2 cut(s) 362, 445
AlwNI CAGNNNCTG 1 cut(s) 652
AoxI GGCC 3 cut(s) 396, 430, 763
ApeKI GCWGC 2 cut(s) 112, 539
ApoI RAATTY 3 cut(s) 269, 824, 839
AspA2I CCTAGG 1 cut(s) 116
AspS9I GGNCC 3 cut(s) 120, 396, 405
AsuHPI GGTGA 1 cut(s) 351
AvaII GGWCC 2 cut(s) 120, 405
AvrII CCTAGG 1 cut(s) 116
BalI TGGCCA 2 cut(s) 432, 765
BanII GRGCYC 1 cut(s) 796
BbsI GAAGAC 2 cut(s) 316, 391
BbvI GCAGC 2 cut(s) 99, 526
BccI CCATC 2 cut(s) 26, 852
BciT130I CCWGG 1 cut(s) 694
BciVI GTATCC 1 cut(s) 141
BcoDI GTCTC 2 cut(s) 362, 445
BfaI CTAG 2 cut(s) 117, 797
BfmI CTRYAG 2 cut(s) 262, 540
BfuI GTATCC 1 cut(s) 141
BisI GCNGC 2 cut(s) 113, 540
BlnI CCTAGG 1 cut(s) 116
BlpI GCTNAGC 1 cut(s) 46
BlsI GCNGC 2 cut(s) 114, 541
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 694
Bme18I GGWCC 2 cut(s) 120, 405
BmgT120I GGNCC 3 cut(s) 120, 396, 405
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 694
BmrI ACTGGG 1 cut(s) 121
BmsI GCATC 4 cut(s) 43, 343, 347, 840
BmuI ACTGGG 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 374
BpiI GAAGAC 2 cut(s) 316, 391
BpmI CTGGAG 1 cut(s) 340
Bpu1102I GCTNAGC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 116, 692
Bsc4I CCNNNNNNNGG 3 cut(s) 491, 561, 818
Bse1I ACTGG 3 cut(s) 127, 657, 840
BseBI CCWGG 1 cut(s) 694
BseDI CCNNGG 2 cut(s) 116, 692
BseGI GGATG 3 cut(s) 358, 511, 855
BseLI CCNNNNNNNGG 3 cut(s) 491, 561, 818
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 3 cut(s) 127, 657, 840
BseXI GCAGC 2 cut(s) 99, 526
BshFI GGCC 3 cut(s) 398, 432, 765
BsiSI CCGG 1 cut(s) 253
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 3 cut(s) 491, 561, 818
BsmAI GTCTC 2 cut(s) 362, 445
BsmBI CGTCTC 1 cut(s) 445
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 3 cut(s) 398, 432, 765
Bsp1286I GDGCHC 1 cut(s) 796
Bsp1407I TGTACA 1 cut(s) 75
Bsp143I GATC 2 cut(s) 422, 892
Bsp1720I GCTNAGC 1 cut(s) 46
BspACI CCGC 1 cut(s) 644
BspANI GGCC 3 cut(s) 398, 432, 765
BspCNI CTCAG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 544
BsrGI TGTACA 1 cut(s) 75
BsrI ACTGG 3 cut(s) 127, 657, 840
BssECI CCNNGG 2 cut(s) 116, 692
BssMI GATC 2 cut(s) 422, 892
BssNAI GTATAC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 116
Bst1107I GTATAC 1 cut(s) 190
Bst2UI CCWGG 1 cut(s) 694
Bst4CI ACNGT 3 cut(s) 75, 266, 871
BstAUI TGTACA 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 4 cut(s) 6, 46, 96, 486
BstF5I GGATG 3 cut(s) 358, 511, 855
BstKTI GATC 2 cut(s) 425, 895
BstMAI GTCTC 2 cut(s) 362, 445
BstMBI GATC 2 cut(s) 422, 892
BstMWI GCNNNNNNNGC 3 cut(s) 362, 643, 719
BstNI CCWGG 1 cut(s) 694
BstNSI RCATGY 1 cut(s) 152
BstPAI GACNNNNGTC 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 692
BstSFI CTRYAG 2 cut(s) 262, 540
BstV1I GCAGC 2 cut(s) 99, 526
BstV2I GAAGAC 2 cut(s) 316, 391
BstZ17I GTATAC 1 cut(s) 190
BsuI GTATCC 1 cut(s) 141
BsuRI GGCC 3 cut(s) 398, 432, 765
BtsCI GGATG 3 cut(s) 358, 511, 855
BtsI GCAGTG 2 cut(s) 63, 340
BtsIMutI CAGTG 4 cut(s) 63, 71, 340, 650
Cac8I GCNNGC 1 cut(s) 434
CaiI CAGNNNCTG 1 cut(s) 652
Cfr13I GGNCC 3 cut(s) 120, 396, 405
CseI GACGC 1 cut(s) 345
Csp6I GTAC 3 cut(s) 76, 232, 781
CspCI CAANNNNNGTGG 2 cut(s) 711, 746
CviAII CATG 3 cut(s) 149, 224, 609
CviJI RGCY 9 cut(s) 24, 50, 112, 398, 432, 436, 664, 765, 794
CviKI_1 RGCY 9 cut(s) 24, 50, 112, 398, 432, 436, 664, 765, 794
CviQI GTAC 3 cut(s) 76, 232, 781
DdeI CTNAG 4 cut(s) 6, 46, 96, 486
DpnI GATC 2 cut(s) 424, 894
DpnII GATC 2 cut(s) 422, 892
EaeI YGGCCR 2 cut(s) 430, 763
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 796
Eco32I GATATC 1 cut(s) 702
Eco47I GGWCC 2 cut(s) 120, 405
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 692
EcoRV GATATC 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 796
ErhI CCWWGG 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 445
FaeI CATG 3 cut(s) 152, 227, 612
FaqI GGGAC 1 cut(s) 159
FatI CATG 3 cut(s) 148, 223, 608
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 113, 540
FokI GGATG 3 cut(s) 365, 498, 862
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 2 cut(s) 113, 540
FspBI CTAG 2 cut(s) 117, 797
GluI GCNGC 2 cut(s) 113, 540
GsuI CTGGAG 1 cut(s) 340
HaeIII GGCC 3 cut(s) 398, 432, 765
HapII CCGG 1 cut(s) 253
HgaI GACGC 1 cut(s) 345
Hin1II CATG 3 cut(s) 152, 227, 612
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 2 cut(s) 605, 888
HpaII CCGG 1 cut(s) 253
HphI GGTGA 1 cut(s) 351
Hpy166II GTNNAC 2 cut(s) 61, 190
Hpy188I TCNGA 5 cut(s) 286, 294, 470, 617, 757
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 2 cut(s) 61, 190
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 3 cut(s) 580, 627, 839
HpyCH4III ACNGT 3 cut(s) 75, 266, 871
HpyCH4IV ACGT 2 cut(s) 288, 750
HpyCH4V TGCA 4 cut(s) 56, 71, 338, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 362, 643, 719
HpyF3I CTNAG 4 cut(s) 6, 46, 96, 486
HpySE526I ACGT 2 cut(s) 288, 750
Hsp92II CATG 3 cut(s) 152, 227, 612
Kzo9I GATC 2 cut(s) 422, 892
LmnI GCTCC 1 cut(s) 624
Lsp1109I GCAGC 2 cut(s) 99, 526
LweI GCATC 4 cut(s) 43, 343, 347, 840
MaeI CTAG 2 cut(s) 117, 797
MaeII ACGT 2 cut(s) 288, 750
MaeIII GTNAC 1 cut(s) 357
MalI GATC 2 cut(s) 424, 894
MboI GATC 2 cut(s) 422, 892
MboII GAAGA 3 cut(s) 214, 321, 396
MhlI GDGCHC 1 cut(s) 796
MlsI TGGCCA 2 cut(s) 432, 765
MluCI AATT 5 cut(s) 269, 464, 558, 824, 839
MluNI TGGCCA 2 cut(s) 432, 765
MlyI GAGTC 1 cut(s) 882
MmeI TCCRAC 3 cut(s) 309, 503, 756
MnlI CCTC 6 cut(s) 418, 466, 495, 521, 525, 667
Mox20I TGGCCA 2 cut(s) 432, 765
MscI TGGCCA 2 cut(s) 432, 765
MseI TTAA 1 cut(s) 912
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 2 cut(s) 432, 765
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 694
MvaI CCWGG 1 cut(s) 694
MwoI GCNNNNNNNGC 3 cut(s) 362, 643, 719
NdeII GATC 2 cut(s) 422, 892
NlaIII CATG 3 cut(s) 152, 227, 612
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 357
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 418
PfeI GAWTC 1 cut(s) 605
PflMI CCANNNNNTGG 2 cut(s) 561, 818
PkrI GCNGC 2 cut(s) 114, 541
PleI GAGTC 1 cut(s) 882
PpsI GAGTC 1 cut(s) 882
PscI ACATGT 1 cut(s) 148
PshAI GACNNNNGTC 1 cut(s) 374
Psp1406I AACGTT 1 cut(s) 750
Psp6I CCWGG 1 cut(s) 692
PspGI CCWGG 1 cut(s) 692
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 3 cut(s) 120, 396, 405
PstI CTGCAG 1 cut(s) 544
PstNI CAGNNNCTG 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 112
RsaI GTAC 3 cut(s) 77, 233, 782
RsaNI GTAC 3 cut(s) 76, 232, 781
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 912
SatI GCNGC 2 cut(s) 113, 540
Sau3AI GATC 2 cut(s) 422, 892
Sau96I GGNCC 3 cut(s) 120, 396, 405
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 1 cut(s) 882
ScrFI CCNGG 1 cut(s) 694
SduI GDGCHC 1 cut(s) 796
SfaNI GCATC 4 cut(s) 43, 343, 347, 840
SfcI CTRYAG 2 cut(s) 262, 540
SinI GGWCC 2 cut(s) 120, 405
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 5 cut(s) 269, 464, 558, 824, 839
SsiI CCGC 1 cut(s) 644
SspMI CTAG 2 cut(s) 117, 797
StyD4I CCNGG 1 cut(s) 692
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 3 cut(s) 75, 266, 871
TaiI ACGT 2 cut(s) 291, 753
TaqI TCGA 2 cut(s) 139, 891
TasI AATT 5 cut(s) 269, 464, 558, 824, 839
TatI WGTACW 3 cut(s) 75, 231, 780
TfiI GAWTC 1 cut(s) 605
Tru1I TTAA 1 cut(s) 912
Tru9I TTAA 1 cut(s) 912
TscAI CASTG 4 cut(s) 63, 78, 340, 657
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 2 cut(s) 112, 539
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 4 cut(s) 380, 500, 599, 866
TspRI CASTG 4 cut(s) 63, 78, 340, 657
Van91I CCANNNNNTGG 2 cut(s) 561, 818
VpaK11BI GGWCC 2 cut(s) 120, 405
XapI RAATTY 3 cut(s) 269, 824, 839
XceI RCATGY 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 2 cut(s) 117, 797
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.