Rh7DG281700

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0014360
Physical Location & Seq
Reverse (-)
30446395 .. 30447825
1431 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG281700.1

Sequence Viewer

Length: 1260 bp
ATGGACTCGGATTCTAGGAGGAGGAGAAACCAAGGAGAAGAGCAATCAGTAACTTGGCTGGAAAGTCTCCCAACTGAAATCATCATCGACATACTTTCCAGGCTTCCTCTTTCCTCTGCGGTACAATTCGGGTATGTATGCCGCTCGTGGCGTGTACTAGCACGTAGTCACCTTGATACTTTGCATAGGCAGTATAGCTCTAACATAGTTGCAAGCCTAGGCCTCATCCTGCACTGTGATCATCCCATTAAAAATGAGCTTTACTTTGTCGATTACCCTTCTAACCATGATGGCAAGAAGATAGCAGAAAAGAAAATTAACAAACCATTCTGTGCTTTAATGCCTGAGTTTGATGTGGTGGTCTCATTTGATGGTTTGCTCTGCTTAGCTGATGCAGTGAACAATGTTGCACTATACATATATAATCCATTCACTAGGGATTACATAGAGCTACCTAGGACCACCCAGTATCCTAATGGACATAGACATGTGGTATTTGGATTTGGGTATAGTCCCTTGACTGAAGTATACAAGGTAGTGAAGATAACCTATTACAATGGTCATGGAGAGTACTATGGTTATAGAGATTGCCGGACTTACTACAGTAAATTTCCCCGACTATCCGACGTTCAGATTTTCACAACAGGAAGACCTATCTGGAGAAGTATAGGCAGTGCATCTCACTACTTGGATTCGTCACCAGCACAGACATTGGTCAATGGAAGACTTCATTGGGCCACTTGGACCTCACGCAGACTGCGATCTGGTGGCCAGCTCATCTCGTTTGACCTATATGATGAGCAATTCAGAGAGGTTCCAATGCCTGAGTTTGGAAGCAGGAGGTGTATTCATCCTCTGGTTGTAGGAGGTTGTCTTGCTGCAGTCGGTTTGTCCATAATTTGGCAATTAGATATATGGGTTATGAAGGCGTATGGTGTGAGAGAATCATGGGTCAGAGAATGGAGCATAGGAAGGCACATTCCGCAGACACTGGAACAAAAGCTTGATGACGAGGTTGGCAACTACCGACCCTGGACGATATCCCGTATAGCAGACAAAGCAAGAGATGTGGTTATTCGGGTTTTGAACGTTTCGGAGAGTGGTCATATCTTGTTGGAGTACAAAAGTAGGGCTCTAGTTCTTTATGACCCAACTAATGGAAATTTTATAGAACTGGAATTTGAAGGGATGCCAAGATGGTTTCAAACTGTTGTTCATCAGGGCAGACTCGATCAAGTTGATACCATTTTTAACAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0008150 GO:0008284 GO:0009506 GO:0030054 GO:0042127 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0055044 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

419

Amino Acids

48.54

Weight (kDa)

8.08

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 20 - 57 9.6e-09 F-box-like
F-box PF00646 20 - 57 1.4e-07 F-box domain
FBA_3 PF08268 85 - 398 7.2e-21 F-box associated beta propeller domain
FBA_1 PF07734 114 - 321 1.7e-12 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 118 - 280 1e-05 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 900, 1157
AccBSI CCGCTC 1 cut(s) 144
AccI GTMKAC 1 cut(s) 528
AciI CCGC 3 cut(s) 119, 142, 983
AclI AACGTT 1 cut(s) 1089
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 3 cut(s) 608, 1162, 1178
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 4 cut(s) 123, 156, 572, 1121
AfiI CCNNNNNNNGG 3 cut(s) 830, 900, 1157
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 3 cut(s) 1087, 1184, 1205
AjnI CCWGG 2 cut(s) 98, 1031
AjuI GAANNNNNNNTTGG 2 cut(s) 715, 747
AluBI AGCT 6 cut(s) 198, 259, 389, 451, 775, 1003
AluI AGCT 6 cut(s) 198, 259, 389, 451, 775, 1003
Alw26I GTCTC 2 cut(s) 71, 367
AlwNI CAGNNNCTG 1 cut(s) 991
AoxI GGCC 3 cut(s) 220, 735, 769
ApeKI GCWGC 1 cut(s) 878
ApoI RAATTY 3 cut(s) 608, 1162, 1178
AspA2I CCTAGG 2 cut(s) 217, 455
AspS9I GGNCC 3 cut(s) 459, 735, 744
AsuHPI GGTGA 2 cut(s) 161, 690
AvaII GGWCC 2 cut(s) 459, 744
AvrII CCTAGG 2 cut(s) 217, 455
BalI TGGCCA 1 cut(s) 771
BanII GRGCYC 1 cut(s) 1135
BauI CACGAG 1 cut(s) 145
BbsI GAAGAC 2 cut(s) 655, 730
BbvI GCAGC 1 cut(s) 865
BccI CCATC 3 cut(s) 284, 365, 1191
BciT130I CCWGG 2 cut(s) 100, 1033
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 71, 367
BfaI CTAG 6 cut(s) 15, 158, 218, 435, 456, 1136
BfmI CTRYAG 2 cut(s) 601, 879
BfuI GTATCC 1 cut(s) 480
BisI GCNGC 2 cut(s) 142, 879
BlnI CCTAGG 2 cut(s) 217, 455
BlpI GCTNAGC 1 cut(s) 385
BlsI GCNGC 2 cut(s) 143, 880
BmcAI AGTACT 1 cut(s) 572
Bme1390I CCNGG 2 cut(s) 100, 1033
Bme18I GGWCC 2 cut(s) 459, 744
BmgT120I GGNCC 3 cut(s) 459, 735, 744
BmiI GGNNCC 1 cut(s) 816
BmrFI CCNGG 2 cut(s) 100, 1033
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 382, 686, 1179
BmuI ACTGGG 1 cut(s) 460
BoxI GACNNNNGTC 1 cut(s) 713
BpiI GAAGAC 2 cut(s) 655, 730
BpmI CTGGAG 1 cut(s) 679
Bpu1102I GCTNAGC 1 cut(s) 385
BsaAI YACGTR 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 4 cut(s) 31, 217, 455, 1031
Bsc4I CCNNNNNNNGG 3 cut(s) 830, 900, 1157
Bse1I ACTGG 3 cut(s) 466, 996, 1179
BseBI CCWGG 2 cut(s) 100, 1033
BseDI CCNNGG 4 cut(s) 31, 217, 455, 1031
BseGI GGATG 4 cut(s) 225, 241, 850, 1194
BseLI CCNNNNNNNGG 3 cut(s) 830, 900, 1157
BseMII CTCAG 2 cut(s) 336, 816
BseNI ACTGG 3 cut(s) 466, 996, 1179
BseRI GAGGAG 2 cut(s) 34, 37
BseXI GCAGC 1 cut(s) 865
BsgI GTGCAG 1 cut(s) 215
BshFI GGCC 3 cut(s) 222, 737, 771
BsiSI CCGG 1 cut(s) 592
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 3 cut(s) 830, 900, 1157
BsmAI GTCTC 2 cut(s) 71, 367
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 3 cut(s) 222, 737, 771
Bso31I GGTCTC 1 cut(s) 367
Bsp1286I GDGCHC 1 cut(s) 1135
Bsp143I GATC 3 cut(s) 238, 761, 1231
Bsp1720I GCTNAGC 1 cut(s) 385
BspACI CCGC 3 cut(s) 119, 142, 983
BspANI GGCC 3 cut(s) 222, 737, 771
BspCNI CTCAG 2 cut(s) 337, 817
BspLI GGNNCC 1 cut(s) 816
BspMAI CTGCAG 1 cut(s) 883
BspQI GCTCTTC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 367
BsrBI CCGCTC 1 cut(s) 144
BsrI ACTGG 3 cut(s) 466, 996, 1179
BssECI CCNNGG 4 cut(s) 31, 217, 455, 1031
BssMI GATC 3 cut(s) 238, 761, 1231
BssNAI GTATAC 1 cut(s) 529
BssSI CACGAG 1 cut(s) 145
BssT1I CCWWGG 3 cut(s) 31, 217, 455
Bst1107I GTATAC 1 cut(s) 529
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 2 cut(s) 100, 1033
Bst4CI ACNGT 3 cut(s) 236, 605, 1210
Bst6I CTCTTC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 214, 773
BstDEI CTNAG 3 cut(s) 345, 385, 825
BstF5I GGATG 4 cut(s) 225, 241, 850, 1194
BstKTI GATC 3 cut(s) 241, 764, 1234
BstMAI GTCTC 2 cut(s) 71, 367
BstMBI GATC 3 cut(s) 238, 761, 1231
BstMWI GCNNNNNNNGC 2 cut(s) 982, 1058
BstNI CCWGG 2 cut(s) 100, 1033
BstNSI RCATGY 1 cut(s) 491
BstPAI GACNNNNGTC 1 cut(s) 713
BstSCI CCNGG 2 cut(s) 98, 1031
BstSFI CTRYAG 2 cut(s) 601, 879
BstV1I GCAGC 1 cut(s) 865
BstV2I GAAGAC 2 cut(s) 655, 730
BstZ17I GTATAC 1 cut(s) 529
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 3 cut(s) 222, 737, 771
BtsCI GGATG 4 cut(s) 225, 241, 850, 1194
BtsI GCAGTG 2 cut(s) 402, 679
BtsIMutI CAGTG 4 cut(s) 232, 402, 679, 989
Cac8I GCNNGC 2 cut(s) 214, 773
CaiI CAGNNNCTG 1 cut(s) 991
Cfr13I GGNCC 3 cut(s) 459, 735, 744
Csp6I GTAC 4 cut(s) 122, 155, 571, 1120
CspCI CAANNNNNGTGG 2 cut(s) 1050, 1085
CviAII CATG 4 cut(s) 287, 488, 563, 948
CviQI GTAC 4 cut(s) 122, 155, 571, 1120
DdeI CTNAG 3 cut(s) 345, 385, 825
DpnI GATC 3 cut(s) 240, 763, 1233
DpnII GATC 3 cut(s) 238, 761, 1231
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 31, 217, 455
Eco147I AGGCCT 1 cut(s) 222
Eco24I GRGCYC 1 cut(s) 1135
Eco31I GGTCTC 1 cut(s) 367
Eco32I GATATC 1 cut(s) 1041
Eco47I GGWCC 2 cut(s) 459, 744
Eco57I CTGAAG 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 98, 1031
EcoRV GATATC 1 cut(s) 1041
EcoT14I CCWWGG 3 cut(s) 31, 217, 455
EcoT38I GRGCYC 1 cut(s) 1135
ErhI CCWWGG 3 cut(s) 31, 217, 455
FaeI CATG 4 cut(s) 290, 491, 566, 951
FaqI GGGAC 1 cut(s) 498
FatI CATG 4 cut(s) 286, 487, 562, 947
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 2 cut(s) 142, 879
FokI GGATG 4 cut(s) 212, 228, 837, 1201
FriOI GRGCYC 1 cut(s) 1135
Fsp4HI GCNGC 2 cut(s) 142, 879
FspBI CTAG 6 cut(s) 15, 158, 218, 435, 456, 1136
GluI GCNGC 2 cut(s) 142, 879
GsuI CTGGAG 1 cut(s) 679
HaeIII GGCC 3 cut(s) 222, 737, 771
HapII CCGG 1 cut(s) 592
Hin1II CATG 4 cut(s) 290, 491, 566, 951
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 5 cut(s) 5, 11, 692, 944, 1227
HpaII CCGG 1 cut(s) 592
HphI GGTGA 2 cut(s) 161, 690
Hpy166II GTNNAC 3 cut(s) 155, 400, 529
Hpy188I TCNGA 6 cut(s) 10, 625, 633, 809, 956, 1096
Hpy188III TCNNGA 1 cut(s) 658
Hpy8I GTNNAC 3 cut(s) 155, 400, 529
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 4 cut(s) 288, 919, 966, 1178
HpyCH4III ACNGT 3 cut(s) 236, 605, 1210
HpyCH4IV ACGT 3 cut(s) 163, 627, 1089
HpyCH4V TGCA 7 cut(s) 184, 212, 232, 395, 410, 677, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 982, 1058
HpyF3I CTNAG 3 cut(s) 345, 385, 825
HpySE526I ACGT 3 cut(s) 163, 627, 1089
Hsp92II CATG 4 cut(s) 290, 491, 566, 951
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 238, 761, 1231
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 963
Lsp1109I GCAGC 1 cut(s) 865
LweI GCATC 3 cut(s) 382, 686, 1179
MaeI CTAG 6 cut(s) 15, 158, 218, 435, 456, 1136
MaeII ACGT 3 cut(s) 163, 627, 1089
MaeIII GTNAC 3 cut(s) 49, 167, 696
MalI GATC 3 cut(s) 240, 763, 1233
MbiI CCGCTC 1 cut(s) 144
MboI GATC 3 cut(s) 238, 761, 1231
MboII GAAGA 5 cut(s) 50, 310, 553, 660, 735
MhlI GDGCHC 1 cut(s) 1135
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 8 cut(s) 125, 315, 608, 803, 897, 905, 1162, 1178
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 1 cut(s) 1221
MmeI TCCRAC 2 cut(s) 648, 1095
Mox20I TGGCCA 1 cut(s) 771
MscI TGGCCA 1 cut(s) 771
MseI TTAA 4 cut(s) 249, 318, 338, 1251
MslI CAYNNNNRTG 1 cut(s) 486
Msp20I TGGCCA 1 cut(s) 771
MspI CCGG 1 cut(s) 592
MspR9I CCNGG 2 cut(s) 100, 1033
MvaI CCWGG 2 cut(s) 100, 1033
MwoI GCNNNNNNNGC 2 cut(s) 982, 1058
NdeII GATC 3 cut(s) 238, 761, 1231
NlaIII CATG 4 cut(s) 290, 491, 566, 951
NlaIV GGNNCC 1 cut(s) 816
NmuCI GTSAC 2 cut(s) 167, 696
NspI RCATGY 1 cut(s) 491
PceI AGGCCT 1 cut(s) 222
PciI ACATGT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 757
PfeI GAWTC 3 cut(s) 11, 692, 944
PflMI CCANNNNNTGG 2 cut(s) 900, 1157
PkrI GCNGC 2 cut(s) 143, 880
PleI GAGTC 1 cut(s) 1221
PpsI GAGTC 1 cut(s) 1221
Ppu21I YACGTR 1 cut(s) 164
PscI ACATGT 1 cut(s) 487
PshAI GACNNNNGTC 1 cut(s) 713
Psp1406I AACGTT 1 cut(s) 1089
Psp6I CCWGG 2 cut(s) 98, 1031
PspGI CCWGG 2 cut(s) 98, 1031
PspN4I GGNNCC 1 cut(s) 816
PspPI GGNCC 3 cut(s) 459, 735, 744
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 991
RsaI GTAC 4 cut(s) 123, 156, 572, 1121
RsaNI GTAC 4 cut(s) 122, 155, 571, 1120
RseI CAYNNNNRTG 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 4 cut(s) 249, 318, 338, 1251
SatI GCNGC 2 cut(s) 142, 879
Sau3AI GATC 3 cut(s) 238, 761, 1231
Sau96I GGNCC 3 cut(s) 459, 735, 744
ScaI AGTACT 1 cut(s) 572
SchI GAGTC 1 cut(s) 1221
ScrFI CCNGG 2 cut(s) 100, 1033
SduI GDGCHC 1 cut(s) 1135
SfaNI GCATC 3 cut(s) 382, 686, 1179
SfcI CTRYAG 2 cut(s) 601, 879
SinI GGWCC 2 cut(s) 459, 744
SmiMI CAYNNNNRTG 1 cut(s) 486
Sse9I AATT 8 cut(s) 125, 315, 608, 803, 897, 905, 1162, 1178
SseBI AGGCCT 1 cut(s) 222
SsiI CCGC 3 cut(s) 119, 142, 983
SspMI CTAG 6 cut(s) 15, 158, 218, 435, 456, 1136
StuI AGGCCT 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 98, 1031
StyI CCWWGG 3 cut(s) 31, 217, 455
TaaI ACNGT 3 cut(s) 236, 605, 1210
TaiI ACGT 3 cut(s) 166, 630, 1092
TaqI TCGA 3 cut(s) 87, 270, 1230
TasI AATT 8 cut(s) 125, 315, 608, 803, 897, 905, 1162, 1178
TatI WGTACW 3 cut(s) 154, 570, 1119
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 3 cut(s) 11, 692, 944
Tru1I TTAA 4 cut(s) 249, 318, 338, 1251
Tru9I TTAA 4 cut(s) 249, 318, 338, 1251
TscAI CASTG 4 cut(s) 239, 402, 679, 996
TseFI GTSAC 2 cut(s) 167, 696
TseI GCWGC 1 cut(s) 878
Tsp45I GTSAC 2 cut(s) 167, 696
TspDTI ATGAA 4 cut(s) 719, 839, 938, 1205
TspRI CASTG 4 cut(s) 239, 402, 679, 996
Van91I CCANNNNNTGG 2 cut(s) 900, 1157
VpaK11BI GGWCC 2 cut(s) 459, 744
XapI RAATTY 3 cut(s) 608, 1162, 1178
XceI RCATGY 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XmaJI CCTAGG 2 cut(s) 217, 455
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 6 cut(s) 15, 158, 218, 435, 456, 1136
ZrmI AGTACT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.