Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

11235575 .. 11237542

Gene Structure 1968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0142300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGAACAGCAGTTGGGGAAGAGCCTCACATCGGTTATATTGCAGAAGATTTAAGCTACATTATCTTGAAGTCGCAATGGAGCAAAGCAAGGGGAGAAGATTGATACTCTTCCCAGTACCTCTTCAAGGCCATGTAATCCCGATGCTGGAGCTAGCCAACCTTCTACACTTCAAAGGCTTCTCCATAACCATAGTCCACACCCACTTCAACAAACTGAACCCCTCAAGCTATCCGCACTTAACCTTTCACTTGATCGATGAAGGCTTGTCTGTAGAGAGTTTCAAGCTACCAAGGCTTCTGCTAAGGACTGGGGGTGCTTCTTCCTTGGCTGTTTATATTGCCTTCCCGCTTATGCGTGAAAAGGGTTACTACCCTAAACAAGATTCTCGACTAGAAGAGCCGGTGAAAGAGTTTCCGCCTCTGAAAATCAAAGATCTTCCAACTATCAAAACGAAGCAGAATCCAGAACAATTTTTCCAAATGACTGCAAGTCGCCTGACAGATGAAGCCAATTCCTCACATGGAGTCATTATCAACACTTTTGAAGATATTGAAGGACAGGCGCTTATCAGACTTTGTGATGAACTATCCGCTCCAATTTTTGGAGTAGGTCCATTTCACAAGCCTTTCCCTACAACTGGTTCTTCAGGATCAGGTAGCTCGATCAACTTACCACAAGACCAGAGTTGTATTTCATGGCTCAACACCCAAGCACAAAACTCTGTTATCTATGTTGGGTTTGGGAGCCTTGCTACAATAAGCGAAGAGCAGTTTTTGGAGCTAGCTTGGGGTCTAGCCAATAGCAACCAACCGTTTTTGTGGGTGGTCCGATCCGAGTTTGTTCAGGGTTCGAAATGGCTTGAAGCGTTGCCTGATAAGTTTCTCGAAACTTTGAAAGGGAAGGGCCACATTGTGAAATGGGCACCCCAGAAAGCAGTTCTGGCACATCCAGCAGTCGGAGCCTTTTGGACTCACTGCGGCTGGAATTCTACACTAGAGTGTATTAGTGAAGGGGTTCCTATGATTTGTATGCCATGTTCTGCTGATCAAATGATAAATGCTCGATATGTGAGTGATGTTTGGAAAGTAGGGTTGCAGTTGGAGCATGGAAGAGAAAGAGGTGAGATTGAGAAAACAATTAGAAAACTAATGGTGGAGAAAGAAGGTGAAGAAATTAGAAAAAATATGTCAAATCTAAAGGAGAAGGCAGATCTTTGCTTCAGACCAGGTGGCTCCTCGTATGAATGCTTGGAGGGATTGGTTAAACACATTTTATCATTGGAAGCCAATGTTCTCCAAACTCAGATTGAAGCTACTGTGAATCCCCTAATTGGTCTTATCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

448

Amino Acids

50.33

Weight (kDa)

6.95

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	226 - 365	2.8e-29	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	922
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	593
AciI	CCGC	5 cut(s)	233, 347, 416, 591, 978
AclWI	GGATC	2 cut(s)	658, 825
AcsI	RAATTY	1 cut(s)	985
AcuI	CTGAAG	2 cut(s)	630, 1204
AdeI	CACNNNGTG	1 cut(s)	913
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	7 cut(s)	30, 125, 145, 602, 638, 956, 1331
AhdI	GACNNNNNGTC	1 cut(s)	489
AjnI	CCWGG	1 cut(s)	1225
AleI	CACNNNNGTG	1 cut(s)	997
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	8 cut(s)	55, 151, 228, 286, 660, 781, 785, 1313
AluI	AGCT	8 cut(s)	55, 151, 228, 286, 660, 781, 785, 1313
AlwI	GGATC	2 cut(s)	658, 825
AoxI	GGCC	2 cut(s)	127, 904
ApoI	RAATTY	1 cut(s)	985
Asp700I	GAANNNNTTC	1 cut(s)	1014
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	3 cut(s)	611, 826, 904
AsuHPI	GGTGA	3 cut(s)	415, 1133, 1178
AsuII	TTCGAA	1 cut(s)	851
AsuNHI	GCTAGC	2 cut(s)	151, 781
AvaII	GGWCC	2 cut(s)	611, 826
BaeGI	GKGCMC	1 cut(s)	925
BanI	GGYRCC	1 cut(s)	922
BciT130I	CCWGG	1 cut(s)	1227
BclI	TGATCA	1 cut(s)	1045
BfaI	CTAG	5 cut(s)	152, 392, 782, 794, 995
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	566
BglII	AGATCT	2 cut(s)	433, 1210
BisI	GCNGC	1 cut(s)	979
BlsI	GCNGC	1 cut(s)	980
Bme1390I	CCNGG	1 cut(s)	1227
Bme18I	GGWCC	2 cut(s)	611, 826
BmeRI	GACNNNNNGTC	1 cut(s)	489
BmgT120I	GGNCC	3 cut(s)	611, 826, 904
BmiI	GGNNCC	5 cut(s)	746, 924, 961, 1017, 1234
BmrFI	CCNGG	1 cut(s)	1227
BmrI	ACTGGG	2 cut(s)	107, 318
BmsI	GCATC	1 cut(s)	132
BmtI	GCTAGC	2 cut(s)	155, 785
BmuI	ACTGGG	2 cut(s)	107, 318
BpmI	CTGGAG	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	302
Bpu14I	TTCGAA	1 cut(s)	851
BpuEI	CTTGAG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	290, 324
Bsc4I	CCNNNNNNNGG	7 cut(s)	30, 125, 145, 602, 638, 956, 1331
Bse118I	RCCGGY	1 cut(s)	400
Bse1I	ACTGG	3 cut(s)	113, 313, 643
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	1227
BseCI	ATCGAT	1 cut(s)	255
BseDI	CCNNGG	2 cut(s)	290, 324
BseGI	GGATG	1 cut(s)	946
BseLI	CCNNNNNNNGG	7 cut(s)	30, 125, 145, 602, 638, 956, 1331
BseMI	GCAATG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	1316
BseNI	ACTGG	3 cut(s)	113, 313, 643
BseRI	GAGGAG	1 cut(s)	1225
BseSI	GKGCMC	1 cut(s)	925
BshFI	GGCC	2 cut(s)	129, 906
BshNI	GGYRCC	1 cut(s)	922
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	7 cut(s)	30, 125, 145, 602, 638, 956, 1331
BsmI	GAATGC	1 cut(s)	1250
BsnI	GGCC	2 cut(s)	129, 906
Bsp119I	TTCGAA	1 cut(s)	851
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp143I	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
BspACI	CCGC	5 cut(s)	233, 347, 416, 591, 978
BspANI	GGCC	2 cut(s)	129, 906
BspCNI	CTCAG	1 cut(s)	1315
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	5 cut(s)	746, 924, 961, 1017, 1234
BspOI	GCTAGC	2 cut(s)	155, 785
BspPI	GGATC	2 cut(s)	658, 825
BspQI	GCTCTTC	3 cut(s)	13, 390, 759
BspT104I	TTCGAA	1 cut(s)	851
BspT107I	GGYRCC	1 cut(s)	922
BsrBI	CCGCTC	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	400
BsrI	ACTGG	3 cut(s)	113, 313, 643
BssAI	RCCGGY	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	290, 324
BssMI	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
BssT1I	CCWWGG	2 cut(s)	290, 324
Bst2UI	CCWGG	1 cut(s)	1227
Bst4CI	ACNGT	2 cut(s)	813, 1318
Bst6I	CTCTTC	6 cut(s)	13, 113, 126, 390, 759, 1105
BstBI	TTCGAA	1 cut(s)	851
BstC8I	GCNNGC	2 cut(s)	153, 783
BstDEI	CTNAG	2 cut(s)	302, 1302
BstENI	CCTNNNNNAGG	1 cut(s)	123
BstF5I	GGATG	1 cut(s)	946
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	7 cut(s)	255, 436, 653, 666, 833, 1048, 1213
BstMBI	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
BstMWI	GCNNNNNNNGC	5 cut(s)	292, 941, 950, 959, 1102
BstNI	CCWGG	1 cut(s)	1227
BstSCI	CCNGG	1 cut(s)	1225
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	925
BstX2I	RGATCY	2 cut(s)	433, 1210
BstYI	RGATCY	2 cut(s)	433, 1210
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	2 cut(s)	129, 906
BsuTUI	ATCGAT	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	946
BtsI	GCAGTG	1 cut(s)	973
BtsIMutI	CAGTG	1 cut(s)	973
Cac8I	GCNNGC	2 cut(s)	153, 783
CfoI	GCGC	1 cut(s)	565
Cfr10I	RCCGGY	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	611, 826, 904
ClaI	ATCGAT	1 cut(s)	255
CsiI	ACCWGGT	1 cut(s)	1225
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	5 cut(s)	131, 521, 696, 1035, 1106
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	302, 1302
DpnI	GATC	7 cut(s)	254, 435, 652, 665, 832, 1047, 1212
DpnII	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
DraIII	CACNNNGTG	1 cut(s)	913
DriI	GACNNNNNGTC	1 cut(s)	489
Eam1104I	CTCTTC	6 cut(s)	13, 113, 126, 390, 759, 1105
Eam1105I	GACNNNNNGTC	1 cut(s)	489
EarI	CTCTTC	6 cut(s)	13, 113, 126, 390, 759, 1105
EciI	GGCGGA	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	290, 324
Eco47I	GGWCC	2 cut(s)	611, 826
Eco57I	CTGAAG	2 cut(s)	630, 1204
EcoNI	CCTNNNNNAGG	1 cut(s)	123
EcoRI	GAATTC	1 cut(s)	985
EcoRII	CCWGG	1 cut(s)	1225
EcoT14I	CCWWGG	2 cut(s)	290, 324
ErhI	CCWWGG	2 cut(s)	290, 324
FaeI	CATG	5 cut(s)	134, 524, 699, 1038, 1109
FatI	CATG	5 cut(s)	130, 520, 695, 1034, 1105
FauI	CCCGC	1 cut(s)	354
FbaI	TGATCA	1 cut(s)	1045
Fnu4HI	GCNGC	1 cut(s)	979
FokI	GGATG	1 cut(s)	933
Fsp4HI	GCNGC	1 cut(s)	979
FspBI	CTAG	5 cut(s)	152, 392, 782, 794, 995
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	1 cut(s)	979
GsuI	CTGGAG	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	2 cut(s)	129, 906
HapII	CCGG	1 cut(s)	401
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	5 cut(s)	134, 524, 699, 1038, 1109
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	5 cut(s)	383, 460, 525, 970, 1321
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	3 cut(s)	415, 1133, 1178
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	7 cut(s)	423, 572, 830, 835, 959, 1223, 1305
Hpy188III	TCNNGA	6 cut(s)	65, 139, 387, 464, 648, 884
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	8 cut(s)	170, 254, 352, 548, 895, 1004, 1157, 1198
HpyCH4III	ACNGT	2 cut(s)	813, 1318
HpyCH4V	TGCA	3 cut(s)	42, 488, 1096
HpyF10VI	GCNNNNNNNGC	5 cut(s)	292, 941, 950, 959, 1102
HpyF3I	CTNAG	2 cut(s)	302, 1302
Hsp92II	CATG	5 cut(s)	134, 524, 699, 1038, 1109
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	1 cut(s)	1045
Kzo9I	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
LguI	GCTCTTC	3 cut(s)	13, 390, 759
LmnI	GCTCC	8 cut(s)	79, 148, 598, 744, 778, 959, 1102, 1238
LweI	GCATC	1 cut(s)	132
MabI	ACCWGGT	1 cut(s)	1225
MaeI	CTAG	5 cut(s)	152, 392, 782, 794, 995
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	7 cut(s)	254, 435, 652, 665, 832, 1047, 1212
MbiI	CCGCTC	1 cut(s)	593
MboI	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
MflI	RGATCY	2 cut(s)	433, 1210
MhlI	GDGCHC	1 cut(s)	925
MluCI	AATT	7 cut(s)	470, 511, 597, 985, 1137, 1173, 1329
MlyI	GAGTC	2 cut(s)	534, 964
MmeI	TCCRAC	3 cut(s)	464, 937, 1080
MnlI	CCTC	8 cut(s)	34, 129, 232, 429, 526, 1112, 1246, 1246
MroXI	GAANNNNTTC	1 cut(s)	1014
MseI	TTAA	3 cut(s)	51, 239, 1263
MslI	CAYNNNNRTG	1 cut(s)	997
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	1227
Mva1269I	GAATGC	1 cut(s)	1250
MvaI	CCWGG	1 cut(s)	1227
MwoI	GCNNNNNNNGC	5 cut(s)	292, 941, 950, 959, 1102
NdeII	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
NheI	GCTAGC	2 cut(s)	151, 781
NlaIII	CATG	5 cut(s)	134, 524, 699, 1038, 1109
NlaIV	GGNNCC	5 cut(s)	746, 924, 961, 1017, 1234
NspV	TTCGAA	1 cut(s)	851
OliI	CACNNNNGTG	1 cut(s)	997
PciSI	GCTCTTC	3 cut(s)	13, 390, 759
PctI	GAATGC	1 cut(s)	1250
PdmI	GAANNNNTTC	1 cut(s)	1014
PfeI	GAWTC	3 cut(s)	383, 460, 1321
PflMI	CCANNNNNTGG	1 cut(s)	602
PkrI	GCNGC	1 cut(s)	980
PleI	GAGTC	2 cut(s)	533, 964
PpsI	GAGTC	2 cut(s)	533, 964
Psp6I	CCWGG	1 cut(s)	1225
PspGI	CCWGG	1 cut(s)	1225
PspN4I	GGNNCC	5 cut(s)	746, 924, 961, 1017, 1234
PspPI	GGNCC	3 cut(s)	611, 826, 904
PsrI	GAACNNNNNNTAC	2 cut(s)	1021, 1053
PsuI	RGATCY	2 cut(s)	433, 1210
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	997
SapI	GCTCTTC	3 cut(s)	13, 390, 759
SaqAI	TTAA	3 cut(s)	51, 239, 1263
SatI	GCNGC	1 cut(s)	979
Sau3AI	GATC	7 cut(s)	252, 433, 650, 663, 830, 1045, 1210
Sau96I	GGNCC	3 cut(s)	611, 826, 904
SchI	GAGTC	2 cut(s)	534, 964
ScrFI	CCNGG	1 cut(s)	1227
SduI	GDGCHC	1 cut(s)	925
SexAI	ACCWGGT	1 cut(s)	1225
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	1 cut(s)	270
SfuI	TTCGAA	1 cut(s)	851
SinI	GGWCC	2 cut(s)	611, 826
SmiMI	CAYNNNNRTG	1 cut(s)	997
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	7 cut(s)	470, 511, 597, 985, 1137, 1173, 1329
SsiI	CCGC	5 cut(s)	233, 347, 416, 591, 978
SspMI	CTAG	5 cut(s)	152, 392, 782, 794, 995
StyD4I	CCNGG	1 cut(s)	1225
StyI	CCWWGG	2 cut(s)	290, 324
TaaI	ACNGT	2 cut(s)	813, 1318
TaqI	TCGA	7 cut(s)	255, 388, 662, 851, 885, 1063, 1341
TasI	AATT	7 cut(s)	470, 511, 597, 985, 1137, 1173, 1329
TauI	GCSGC	1 cut(s)	981
TfiI	GAWTC	3 cut(s)	383, 460, 1321
Tru1I	TTAA	3 cut(s)	51, 239, 1263
Tru9I	TTAA	3 cut(s)	51, 239, 1263
TscAI	CASTG	1 cut(s)	980
TspDTI	ATGAA	6 cut(s)	17, 273, 519, 597, 684, 1257
TspRI	CASTG	1 cut(s)	980
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	611, 826
XagI	CCTNNNNNAGG	1 cut(s)	123
XapI	RAATTY	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	1014
XspI	CTAG	5 cut(s)	152, 392, 782, 794, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.