Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

4685236 .. 4686896

Gene Structure 1661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1028600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTTCATACTGGTGGAAATCATACACGCCATGTGTTCGTCTCTATCTCGATTGTCTTCCTCTCTGATTCACCGCCTTGCTAGAACCCGATGCCAGGGCCAGGCCGAGCTCATCACTTCTAGGTCTTTCTCCGTCTCCACCAGCTTTGATGGGAAGGGAATCAATCTTTCATTAGTGATATCTAATGATCGAAAATATATTGTGGAATTTACAGGCCACCATGAAAATTTTCAAAATGGTTTCAATGTTTCCGAGAATGGTGCAAGGAATTCCAGGTCTATAAACTTTGTGAGGGGAGTTATAGAGGAGGCTGGATGGAACAACTTGGGGGGTTCCCAGTTTCCTCGATATAATATAGAGCAAAATGCTGATATTGTCCATGTAAAGCTGATGAAAAACAATACCTTTGTTACTGTGACGGACTCAAAGGGCAACAAGAAACTTGGGGCCTCAGCTGGTTCCTTACCAGACATGAAAGGAGGACCTAAATTGGCCAAGTATTCTGCTGAAGCAACTGCAGAACATGTTGGACGGATGTCAAGAAATTTTGGCTTAAAATCAGTTGTAATGAAGGTGAAGGGGTTTAGTTATTTTAAGAAGAAAAGGCAGGCTATCATAAGCTGGAAAGAGGGCTTCACTAGTTCCCGAGCGGGTCACAGTCCCATTGTATACATCGAAGATAGAACCCGAAAGCCTCACAATGGTTGTAGACTCCCAAAGCAGTGTCGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

245

Amino Acids

27.17

Weight (kDa)

10.15

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	125 - 243	8.5e-14	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	650
AccI	GTMKAC	2 cut(s)	669, 709
AciI	CCGC	2 cut(s)	73, 650
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	4 cut(s)	206, 226, 268, 544
AcuI	CTGAAG	1 cut(s)	528
AfiI	CCNNNNNNNGG	3 cut(s)	94, 100, 701
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	233, 244
AhlI	ACTAGT	1 cut(s)	638
AjnI	CCWGG	3 cut(s)	93, 99, 272
AluBI	AGCT	5 cut(s)	109, 144, 388, 455, 621
AluI	AGCT	5 cut(s)	109, 144, 388, 455, 621
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	45, 139
Ama87I	CYCGRG	1 cut(s)	645
AoxI	GGCC	5 cut(s)	97, 102, 214, 447, 492
ApoI	RAATTY	4 cut(s)	206, 226, 268, 544
Asp700I	GAANNNNTTC	1 cut(s)	228
AspS9I	GGNCC	3 cut(s)	97, 447, 482
AsuHPI	GGTGA	2 cut(s)	62, 586
AvaI	CYCGRG	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	111
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	111
BbvCI	CCTCAGC	1 cut(s)	451
BccI	CCATC	2 cut(s)	143, 309
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	3 cut(s)	95, 101, 274
BcoDI	GTCTC	2 cut(s)	45, 139
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	3 cut(s)	81, 120, 639
BfmI	CTRYAG	1 cut(s)	516
Bme1390I	CCNGG	3 cut(s)	95, 101, 274
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	645
BmgT120I	GGNCC	3 cut(s)	97, 447, 482
BmiI	GGNNCC	3 cut(s)	334, 448, 460
BmrFI	CCNGG	3 cut(s)	95, 101, 274
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	331
BoxI	GACNNNNGTC	1 cut(s)	535
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 100, 701
Bse1I	ACTGG	2 cut(s)	15, 337
BseBI	CCWGG	3 cut(s)	95, 101, 274
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	2 cut(s)	320, 540
BseLI	CCNNNNNNNGG	3 cut(s)	94, 100, 701
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	2 cut(s)	15, 337
BseRI	GAGGAG	1 cut(s)	320
BshFI	GGCC	5 cut(s)	99, 104, 216, 449, 494
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	3 cut(s)	94, 100, 701
BsmAI	GTCTC	2 cut(s)	45, 139
BsmBI	CGTCTC	2 cut(s)	45, 139
BsmFI	GGGAC	1 cut(s)	645
BsnI	GGCC	5 cut(s)	99, 104, 216, 449, 494
BsoBI	CYCGRG	1 cut(s)	645
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	2 cut(s)	73, 650
BspANI	GGCC	5 cut(s)	99, 104, 216, 449, 494
BspCNI	CTCAG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	334, 448, 460
BspMAI	CTGCAG	1 cut(s)	520
BsrBI	CCGCTC	1 cut(s)	650
BsrI	ACTGG	2 cut(s)	15, 337
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	1 cut(s)	187
BssNAI	GTATAC	1 cut(s)	670
Bst1107I	GTATAC	1 cut(s)	670
Bst2UI	CCWGG	3 cut(s)	95, 101, 274
Bst4CI	ACNGT	2 cut(s)	415, 659
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	451
BstF5I	GGATG	2 cut(s)	320, 540
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	2 cut(s)	45, 139
BstMBI	GATC	1 cut(s)	187
BstNI	CCWGG	3 cut(s)	95, 101, 274
BstNSI	RCATGY	1 cut(s)	527
BstPAI	GACNNNNGTC	1 cut(s)	535
BstSCI	CCNGG	3 cut(s)	93, 99, 272
BstSFI	CTRYAG	1 cut(s)	516
BstV2I	GAAGAC	1 cut(s)	48
BstZ17I	GTATAC	1 cut(s)	670
BsuRI	GGCC	5 cut(s)	99, 104, 216, 449, 494
BtsCI	GGATG	2 cut(s)	320, 540
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	1 cut(s)	728
Cac8I	GCNNGC	1 cut(s)	609
Cfr13I	GGNCC	3 cut(s)	97, 447, 482
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	5 cut(s)	31, 221, 380, 472, 524
DdeI	CTNAG	1 cut(s)	451
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	492
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	528
Eco88I	CYCGRG	1 cut(s)	645
EcoICRI	GAGCTC	1 cut(s)	109
EcoO109I	RGGNCCY	2 cut(s)	447, 482
EcoRI	GAATTC	1 cut(s)	268
EcoRII	CCWGG	3 cut(s)	93, 99, 272
EcoRV	GATATC	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	111
Esp3I	CGTCTC	2 cut(s)	45, 139
FaeI	CATG	5 cut(s)	34, 224, 383, 475, 527
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	5 cut(s)	30, 220, 379, 471, 523
FauI	CCCGC	1 cut(s)	643
FblI	GTMKAC	2 cut(s)	669, 709
FokI	GGATG	2 cut(s)	327, 547
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	3 cut(s)	81, 120, 639
HaeIII	GGCC	5 cut(s)	99, 104, 216, 449, 494
Hin1II	CATG	5 cut(s)	34, 224, 383, 475, 527
HinfI	GANTC	4 cut(s)	67, 159, 422, 711
HphI	GGTGA	2 cut(s)	62, 586
Hpy166II	GTNNAC	2 cut(s)	670, 710
Hpy188I	TCNGA	3 cut(s)	66, 253, 734
Hpy188III	TCNNGA	3 cut(s)	48, 540, 645
Hpy8I	GTNNAC	2 cut(s)	670, 710
HpyAV	CCTTC	3 cut(s)	148, 565, 571
HpyCH4III	ACNGT	2 cut(s)	415, 659
HpyCH4V	TGCA	2 cut(s)	263, 518
HpyF3I	CTNAG	1 cut(s)	451
Hsp92II	CATG	5 cut(s)	34, 224, 383, 475, 527
Kzo9I	GATC	1 cut(s)	187
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	3 cut(s)	81, 120, 639
MaeIII	GTNAC	3 cut(s)	409, 415, 653
MalI	GATC	1 cut(s)	189
MbiI	CCGCTC	1 cut(s)	650
MboI	GATC	1 cut(s)	187
MboII	GAAGA	3 cut(s)	48, 610, 689
MhlI	GDGCHC	1 cut(s)	111
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	5 cut(s)	206, 226, 268, 488, 544
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	416, 705
MmeI	TCCRAC	1 cut(s)	508
MnlI	CCTC	9 cut(s)	70, 285, 298, 301, 354, 460, 473, 622, 705
Mox20I	TGGCCA	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	2 cut(s)	554, 594
MslI	CAYNNNNRTG	1 cut(s)	11
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	455
MspR9I	CCNGG	3 cut(s)	95, 101, 274
MvaI	CCWGG	3 cut(s)	95, 101, 274
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	5 cut(s)	34, 224, 383, 475, 527
NlaIV	GGNNCC	3 cut(s)	334, 448, 460
NmeAIII	GCCGAG	1 cut(s)	130
NmuCI	GTSAC	2 cut(s)	415, 653
NspI	RCATGY	1 cut(s)	527
PciI	ACATGT	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	228
PfeI	GAWTC	2 cut(s)	67, 159
PleI	GAGTC	2 cut(s)	416, 705
PpsI	GAGTC	2 cut(s)	416, 705
PpuMI	RGGWCCY	1 cut(s)	482
PscI	ACATGT	1 cut(s)	523
PshAI	GACNNNNGTC	1 cut(s)	535
Psp124BI	GAGCTC	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	3 cut(s)	93, 99, 272
PspGI	CCWGG	3 cut(s)	93, 99, 272
PspN4I	GGNNCC	3 cut(s)	334, 448, 460
PspPI	GGNCC	3 cut(s)	97, 447, 482
PspPPI	RGGWCCY	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	520
PvuII	CAGCTG	1 cut(s)	455
RseI	CAYNNNNRTG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	554, 594
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	3 cut(s)	97, 447, 482
SchI	GAGTC	2 cut(s)	416, 705
ScrFI	CCNGG	3 cut(s)	95, 101, 274
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	516
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	5 cut(s)	206, 226, 268, 488, 544
SsiI	CCGC	2 cut(s)	73, 650
SspMI	CTAG	3 cut(s)	81, 120, 639
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	3 cut(s)	93, 99, 272
TaaI	ACNGT	2 cut(s)	415, 659
TaqI	TCGA	4 cut(s)	49, 190, 346, 675
TasI	AATT	5 cut(s)	206, 226, 268, 488, 544
TfiI	GAWTC	2 cut(s)	67, 159
Tru1I	TTAA	2 cut(s)	554, 594
Tru9I	TTAA	2 cut(s)	554, 594
TscAI	CASTG	1 cut(s)	728
TseFI	GTSAC	2 cut(s)	415, 653
Tsp45I	GTSAC	2 cut(s)	415, 653
TspDTI	ATGAA	5 cut(s)	159, 237, 407, 488, 584
TspGWI	ACGGA	3 cut(s)	121, 434, 547
TspRI	CASTG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	4 cut(s)	206, 226, 268, 544
XceI	RCATGY	1 cut(s)	527
XmiI	GTMKAC	2 cut(s)	669, 709
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	3 cut(s)	81, 120, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.