Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

1993845 .. 1994623

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g01900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCCGCCAGGGCACCAAGAAAATTTTCGAAATGGTTTCAATGCTTCTGAGAATGGAGAGAGGAATTCCAGGTCTATCAACTTTGTGAGGGGAGTACTGATGAAAAACAATACCTTTGTTACTGAGACGGACTCGAAGGGCAACAAGAAACTTGGGGCCTCAGCTGGTTCCATACCAGATATGAAAGGAGGACCAAAATTGGCTCAGTACGCTGCTGAAGCAACTGCAGAACATGTTGGACGGATGTCAAGAAATTTCGGCTTAAAATCAGTTGTGATGAAGGTGAAAGGGTTTACTTATTCTAAGAAGAAAAGGCAAGCTATCATGAGCTGGAAAGAGGGCTTCTCTAGCTCACGAGTGGGTCACAGTCCAATTGTATACATTGAAGATACAACCAGAAAGCCCCACAATGGTTGTAGACTCCCAAAGCAGCGTCGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

148

Amino Acids

16.34

Weight (kDa)

10.5

Isoelectric Point (pI)

42.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AccI	GTMKAC	2 cut(s)	378, 418
AciI	CCGC	1 cut(s)	5
AcsI	RAATTY	3 cut(s)	22, 64, 253
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	2 cut(s)	96, 209
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	40, 386
AjnI	CCWGG	2 cut(s)	7, 68
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	4 cut(s)	164, 320, 330, 351
AluI	AGCT	4 cut(s)	164, 320, 330, 351
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	2 cut(s)	212, 430
ApoI	RAATTY	3 cut(s)	22, 64, 253
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	156, 191
AsuHPI	GGTGA	1 cut(s)	295
AsuII	TTCGAA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	354
BbvCI	CCTCAGC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	199
BciT130I	CCWGG	2 cut(s)	9, 70
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	225
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	3 cut(s)	5, 213, 431
BlsI	GCNGC	3 cut(s)	6, 214, 432
BmcAI	AGTACT	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	9, 70
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	156, 191
BmiI	GGNNCC	3 cut(s)	14, 157, 169
BmrFI	CCNGG	2 cut(s)	9, 70
BoxI	GACNNNNGTC	1 cut(s)	244
BplI	GAGNNNNNCTC	4 cut(s)	116, 148, 329, 361
Bpu10I	CCTNAGC	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	9, 70
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	4 cut(s)	39, 114, 174, 218
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	199
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	410
BsmAI	GTCTC	1 cut(s)	119
BsmBI	CGTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	4 cut(s)	40, 115, 173, 217
BspHI	TCATGA	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	14, 157, 169
BspMAI	CTGCAG	1 cut(s)	229
BspT104I	TTCGAA	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	8
BssNAI	GTATAC	1 cut(s)	379
BssSI	CACGAG	1 cut(s)	354
Bst1107I	GTATAC	1 cut(s)	379
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	9, 70
Bst4CI	ACNGT	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	5 cut(s)	48, 123, 160, 204, 303
BstF5I	GGATG	1 cut(s)	249
BstMAI	GTCTC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 209, 218, 348
BstNI	CCWGG	2 cut(s)	9, 70
BstNSI	RCATGY	1 cut(s)	236
BstPAI	GACNNNNGTC	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	7, 68
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	199
BstZ17I	GTATAC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	318
CciI	TCATGA	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	156, 191
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	95, 208
CspCI	CAANNNNNGTGG	2 cut(s)	395, 430
CviAII	CATG	2 cut(s)	233, 325
CviJI	RGCY	9 cut(s)	158, 164, 203, 261, 320, 330, 342, 351, 403
CviKI_1	RGCY	9 cut(s)	158, 164, 203, 261, 320, 330, 342, 351, 403
CviQI	GTAC	2 cut(s)	95, 208
DdeI	CTNAG	5 cut(s)	48, 123, 160, 204, 303
Eco47I	GGWCC	1 cut(s)	191
Eco57I	CTGAAG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	7, 68
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	2 cut(s)	236, 328
FaiI	YATR	5 cut(s)	173, 182, 234, 326, 379
FatI	CATG	2 cut(s)	232, 324
FblI	GTMKAC	2 cut(s)	378, 418
Fnu4HI	GCNGC	3 cut(s)	5, 213, 431
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	3 cut(s)	5, 213, 431
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	3 cut(s)	5, 213, 431
HaeIII	GGCC	1 cut(s)	158
HgaI	GACGC	1 cut(s)	422
Hin1II	CATG	2 cut(s)	236, 328
HinfI	GANTC	2 cut(s)	131, 420
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	3 cut(s)	294, 379, 419
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	3 cut(s)	249, 325, 354
Hpy8I	GTNNAC	3 cut(s)	294, 379, 419
Hpy99I	CGWCG	1 cut(s)	438
HpyAV	CCTTC	2 cut(s)	130, 274
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 209, 218, 348
HpyF3I	CTNAG	5 cut(s)	48, 123, 160, 204, 303
Hsp92II	CATG	2 cut(s)	236, 328
LpnPI	CCDG	7 cut(s)	21, 55, 82, 150, 189, 316, 409
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	2 cut(s)	118, 362
MboII	GAAGA	2 cut(s)	319, 398
MfeI	CAATTG	1 cut(s)	372
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	5 cut(s)	22, 64, 197, 253, 372
MlyI	GAGTC	2 cut(s)	125, 414
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	54, 81, 169, 182, 331
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	9, 70
MunI	CAATTG	1 cut(s)	372
MvaI	CCWGG	2 cut(s)	9, 70
MwoI	GCNNNNNNNGC	4 cut(s)	10, 209, 218, 348
NlaIII	CATG	2 cut(s)	236, 328
NlaIV	GGNNCC	3 cut(s)	14, 157, 169
NmuCI	GTSAC	1 cut(s)	362
NspI	RCATGY	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	28
PagI	TCATGA	1 cut(s)	324
PciI	ACATGT	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	6, 214, 432
PleI	GAGTC	2 cut(s)	125, 414
PpsI	GAGTC	2 cut(s)	125, 414
PscI	ACATGT	1 cut(s)	232
PshAI	GACNNNNGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	7, 68
PspGI	CCWGG	2 cut(s)	7, 68
PspN4I	GGNNCC	3 cut(s)	14, 157, 169
PspPI	GGNCC	2 cut(s)	156, 191
PstI	CTGCAG	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	2 cut(s)	96, 209
RsaNI	GTAC	2 cut(s)	95, 208
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	3 cut(s)	5, 213, 431
Sau96I	GGNCC	2 cut(s)	156, 191
ScaI	AGTACT	1 cut(s)	96
SchI	GAGTC	2 cut(s)	125, 414
ScrFI	CCNGG	2 cut(s)	9, 70
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	7 cut(s)	74, 116, 166, 285, 322, 332, 353
SfcI	CTRYAG	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	1 cut(s)	191
Sse9I	AATT	5 cut(s)	22, 64, 197, 253, 372
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	2 cut(s)	7, 68
TaaI	ACNGT	1 cut(s)	368
TaqI	TCGA	2 cut(s)	28, 134
TasI	AATT	5 cut(s)	22, 64, 197, 253, 372
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	7
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	212, 430
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	116, 197, 293
TspGWI	ACGGA	2 cut(s)	143, 256
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	3 cut(s)	22, 64, 253
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	2 cut(s)	378, 418
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.