Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

3839159 .. 3841120

Gene Structure 1962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1029200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGCCGCCAGGCCACCAAGAAAATTTTCGAAATGGTATCAATGCTTCTGAGAATGGAGAGAGGAATTCCAGGTCTATCAACTTTGTGAGGGGAGTAGTGGAGGAGGATGGAAGGAGCAACTTTTGGGGTTCTCAGTTTCCTCGATATAATATAGAGCAAAATGCTGATATTGTCCACGTAAAGCTGATGAAAAACAATACCTTTGTTACTGTGACGGACTCGAAGGGCAACAAGAAACTTGGGGCCTCAGCTGGTTCCATACCAGATATGAAAGGAGGACCAAAATTGGCTAAGTATGCGGCTGAAGCAACTGCAGAACACGTTGGACGCATGTCAAGAAATTTCGGCTTAAAATCAGTTGTGATGAAGGTGAAAGGGTTTACTTATTTTAAGAAGAAAAGGCAAGCTATCATGAGCTGGAAAGAGGGCTTCTCTAGTTCCCGAGTGGGTCACAGTCCAATTGTATACATTGAAGATACAACCAGAAAGCCCCACAATGGTTGTAGACTCCCAAAGCAGCGTCGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

177

Amino Acids

19.76

Weight (kDa)

10.28

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	57 - 175	1.6e-15	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	465, 505
AciI	CCGC	2 cut(s)	5, 299
AcsI	RAATTY	3 cut(s)	22, 64, 340
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	2 cut(s)	7, 68
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AluBI	AGCT	4 cut(s)	184, 251, 407, 417
AluI	AGCT	4 cut(s)	184, 251, 407, 417
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	2 cut(s)	10, 243
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	3 cut(s)	22, 64, 340
Asp700I	GAANNNNTTC	1 cut(s)	24
AspS9I	GGNCC	2 cut(s)	243, 278
AsuHPI	GGTGA	1 cut(s)	382
AsuII	TTCGAA	1 cut(s)	28
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	278
BarI	GAAGNNNNNNTAC	2 cut(s)	28, 60
BbvCI	CCTCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	9, 70
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	3 cut(s)	5, 300, 518
BlsI	GCNGC	3 cut(s)	6, 301, 519
Bme1390I	CCNGG	2 cut(s)	9, 70
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	243, 278
BmiI	GGNNCC	2 cut(s)	244, 256
BmrFI	CCNGG	2 cut(s)	9, 70
BoxI	GACNNNNGTC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	416, 448
Bpu10I	CCTNAGC	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
BseBI	CCWGG	2 cut(s)	9, 70
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	3 cut(s)	39, 146, 261
BseRI	GAGGAG	1 cut(s)	116
BshFI	GGCC	2 cut(s)	12, 245
BsiHKCI	CYCGRG	1 cut(s)	441
BslI	CCNNNNNNNGG	1 cut(s)	497
BsnI	GGCC	2 cut(s)	12, 245
BsoBI	CYCGRG	1 cut(s)	441
Bsp119I	TTCGAA	1 cut(s)	28
BspACI	CCGC	2 cut(s)	5, 299
BspANI	GGCC	2 cut(s)	12, 245
BspCNI	CTCAG	3 cut(s)	40, 145, 260
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	244, 256
BspMAI	CTGCAG	1 cut(s)	316
BspT104I	TTCGAA	1 cut(s)	28
BssNAI	GTATAC	1 cut(s)	466
Bst1107I	GTATAC	1 cut(s)	466
Bst2UI	CCWGG	2 cut(s)	9, 70
Bst4CI	ACNGT	2 cut(s)	211, 455
BstBAI	YACGTR	1 cut(s)	178
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	4 cut(s)	48, 132, 247, 291
BstF5I	GGATG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 305
BstNI	CCWGG	2 cut(s)	9, 70
BstNSI	RCATGY	1 cut(s)	334
BstPAI	GACNNNNGTC	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	7, 68
BstSFI	CTRYAG	1 cut(s)	312
BstZ17I	GTATAC	1 cut(s)	466
BsuRI	GGCC	2 cut(s)	12, 245
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	1 cut(s)	411
Cfr13I	GGNCC	2 cut(s)	243, 278
CseI	GACGC	2 cut(s)	336, 509
CspCI	CAANNNNNGTGG	2 cut(s)	482, 517
CviAII	CATG	2 cut(s)	331, 412
DdeI	CTNAG	4 cut(s)	48, 132, 247, 291
Eco47I	GGWCC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	2 cut(s)	7, 68
FaeI	CATG	2 cut(s)	334, 415
FaiI	YATR	8 cut(s)	147, 152, 260, 269, 297, 332, 413, 466
FatI	CATG	2 cut(s)	330, 411
FblI	GTMKAC	2 cut(s)	465, 505
Fnu4HI	GCNGC	3 cut(s)	5, 300, 518
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	5, 300, 518
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	3 cut(s)	5, 300, 518
HaeIII	GGCC	2 cut(s)	12, 245
HgaI	GACGC	2 cut(s)	336, 509
Hin1II	CATG	2 cut(s)	334, 415
HinfI	GANTC	2 cut(s)	218, 507
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	4 cut(s)	175, 381, 466, 506
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	3 cut(s)	336, 412, 441
Hpy8I	GTNNAC	4 cut(s)	175, 381, 466, 506
Hpy99I	CGWCG	1 cut(s)	525
HpyAV	CCTTC	3 cut(s)	105, 217, 361
HpyCH4III	ACNGT	2 cut(s)	211, 455
HpyCH4IV	ACGT	2 cut(s)	177, 321
HpyCH4V	TGCA	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 305
HpyF3I	CTNAG	4 cut(s)	48, 132, 247, 291
HpySE526I	ACGT	2 cut(s)	177, 321
Hsp92II	CATG	2 cut(s)	334, 415
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	7 cut(s)	21, 55, 82, 237, 276, 403, 496
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	177, 321
MaeIII	GTNAC	3 cut(s)	205, 211, 449
MboII	GAAGA	2 cut(s)	406, 485
MfeI	CAATTG	1 cut(s)	459
MluCI	AATT	5 cut(s)	22, 64, 284, 340, 459
MlyI	GAGTC	2 cut(s)	212, 501
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	8 cut(s)	54, 81, 94, 97, 150, 256, 269, 418
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	2 cut(s)	350, 390
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	2 cut(s)	9, 70
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	2 cut(s)	9, 70
MwoI	GCNNNNNNNGC	2 cut(s)	296, 305
NlaIII	CATG	2 cut(s)	334, 415
NlaIV	GGNNCC	2 cut(s)	244, 256
NmuCI	GTSAC	2 cut(s)	211, 449
NspI	RCATGY	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	28
PagI	TCATGA	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	24
PkrI	GCNGC	3 cut(s)	6, 301, 519
PleI	GAGTC	2 cut(s)	212, 501
PpsI	GAGTC	2 cut(s)	212, 501
Ppu21I	YACGTR	1 cut(s)	178
PshAI	GACNNNNGTC	1 cut(s)	331
Psp6I	CCWGG	2 cut(s)	7, 68
PspGI	CCWGG	2 cut(s)	7, 68
PspN4I	GGNNCC	2 cut(s)	244, 256
PspPI	GGNCC	2 cut(s)	243, 278
PstI	CTGCAG	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	350, 390
SatI	GCNGC	3 cut(s)	5, 300, 518
Sau96I	GGNCC	2 cut(s)	243, 278
SchI	GAGTC	2 cut(s)	212, 501
ScrFI	CCNGG	2 cut(s)	9, 70
SetI	ASST	9 cut(s)	74, 180, 186, 203, 253, 324, 372, 409, 419
SfcI	CTRYAG	1 cut(s)	312
SfuI	TTCGAA	1 cut(s)	28
SinI	GGWCC	1 cut(s)	278
Sse9I	AATT	5 cut(s)	22, 64, 284, 340, 459
SsiI	CCGC	2 cut(s)	5, 299
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	7, 68
TaaI	ACNGT	2 cut(s)	211, 455
TaiI	ACGT	2 cut(s)	180, 324
TaqI	TCGA	3 cut(s)	28, 142, 221
TasI	AATT	5 cut(s)	22, 64, 284, 340, 459
TauI	GCSGC	2 cut(s)	7, 302
Tru1I	TTAA	2 cut(s)	350, 390
Tru9I	TTAA	2 cut(s)	350, 390
TseFI	GTSAC	2 cut(s)	211, 449
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	2 cut(s)	211, 449
TspDTI	ATGAA	3 cut(s)	203, 284, 380
TspGWI	ACGGA	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	3 cut(s)	22, 64, 340
XceI	RCATGY	1 cut(s)	334
XmiI	GTMKAC	2 cut(s)	465, 505
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.