Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Forward (+)

38959277 .. 38961028

Gene Structure 1752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTTCTCTCGGCTAGTCCCTCGGGTGACCAGATGCCATACCCATCTCACTGCTTTAAGGTCCTTCTCCTTCTCTAGGATCCCACCCCCACCCCCACCAGGTTCTGTAGATAGTTTTCAGCAGGGTGTTAATGCTTCTGAGAATGTTGCAACCGGAACGGGCTTGGATCATGTCTCCGGATTTCCTGGAAGGAATTCCAGGTCTATGGACTTTGTTAGGGGAGTTATAGACCAAGATGGAAGGGCAAACCGAGCGGATCCTCAGTTTCAGTTCCCTATCAGACATATGGAGCAGAATGCTGATGTAGTCCACATAAAGTTGATGCGTAATAATACTTTTGTTACCGTCACAGATTCAAAGGGGAACAAGAAACTTGGGGCTTCAGCTGGATCTGTACCAGAAATGAAAGGAGGAGCAAAATTGTCTCGCTATGCTGCCGAAGCAACAGCAGAACATGTTGGACGGATGTCCAGAAATTTTGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGGTTTACTTATTTCAAGAAGAAGAAGCAAGCTATCTTGAGCTGGAAAGACGGCTTTACTAATTCCAGAGTGGGTCAAAATCCGGTTATATACATTGAAGATACCACCCGAAAGCCCCATAATGGCTGCCGACTCCGGAAGAAGCGTCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

221

Amino Acids

24.63

Weight (kDa)

10.97

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	102 - 220	1.1e-14	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	254
AccIII	TCCGGA	2 cut(s)	176, 645
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	6 cut(s)	73, 86, 174, 251, 264, 397
AcsI	RAATTY	2 cut(s)	193, 475
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	3 cut(s)	75, 98, 632
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	357, 487, 526, 608
AjnI	CCWGG	3 cut(s)	97, 184, 197
AluBI	AGCT	3 cut(s)	386, 542, 552
AluI	AGCT	3 cut(s)	386, 542, 552
Alw26I	GTCTC	2 cut(s)	178, 429
AlwI	GGATC	6 cut(s)	73, 86, 174, 251, 264, 397
AlwNI	CAGNNNCTG	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	21
Aor13HI	TCCGGA	2 cut(s)	176, 645
ApeKI	GCWGC	2 cut(s)	434, 636
ApoI	RAATTY	2 cut(s)	193, 475
Asp700I	GAANNNNTTC	1 cut(s)	193
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	37, 517
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	60
BamHI	GGATCC	2 cut(s)	78, 256
BbvI	GCAGC	2 cut(s)	421, 623
BccI	CCATC	2 cut(s)	51, 230
BceAI	ACGGC	1 cut(s)	577
BciT130I	CCWGG	3 cut(s)	99, 186, 199
BcoDI	GTCTC	2 cut(s)	178, 429
BfaI	CTAG	3 cut(s)	14, 75, 664
BfmI	CTRYAG	1 cut(s)	105
BisI	GCNGC	2 cut(s)	435, 637
BlsI	GCNGC	2 cut(s)	436, 638
Bme1390I	CCNGG	3 cut(s)	99, 186, 199
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	80, 258
BmrFI	CCNGG	3 cut(s)	99, 186, 199
BmsI	GCATC	2 cut(s)	23, 312
BoxI	GACNNNNGTC	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	4 cut(s)	152, 176, 592, 645
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 98, 632
BseAI	TCCGGA	2 cut(s)	176, 645
BseBI	CCWGG	3 cut(s)	99, 186, 199
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	471
BseLI	CCNNNNNNNGG	3 cut(s)	75, 98, 632
BseMII	CTCAG	2 cut(s)	129, 275
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	421, 623
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	4 cut(s)	153, 177, 593, 646
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	3 cut(s)	75, 98, 632
BsmAI	GTCTC	2 cut(s)	178, 429
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	21
Bsp13I	TCCGGA	2 cut(s)	176, 645
Bsp143I	GATC	4 cut(s)	78, 166, 256, 389
BspACI	CCGC	1 cut(s)	254
BspCNI	CTCAG	2 cut(s)	130, 274
BspEI	TCCGGA	2 cut(s)	176, 645
BspLI	GGNNCC	2 cut(s)	80, 258
BspPI	GGATC	6 cut(s)	73, 86, 174, 251, 264, 397
BsrBI	CCGCTC	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	4 cut(s)	78, 166, 256, 389
Bst2UI	CCWGG	3 cut(s)	99, 186, 199
Bst4CI	ACNGT	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	2 cut(s)	138, 261
BstEII	GGTNACC	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	471
BstKTI	GATC	4 cut(s)	81, 169, 259, 392
BstMAI	GTCTC	2 cut(s)	178, 429
BstMBI	GATC	4 cut(s)	78, 166, 256, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 440
BstNI	CCWGG	3 cut(s)	99, 186, 199
BstNSI	RCATGY	1 cut(s)	458
BstPAI	GACNNNNGTC	1 cut(s)	466
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	97, 184, 197
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	421, 623
BstX2I	RGATCY	3 cut(s)	78, 256, 389
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	3 cut(s)	78, 256, 389
BtsCI	GGATG	1 cut(s)	471
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	540
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	644
CsiI	ACCWGGT	1 cut(s)	97
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	2 cut(s)	170, 455
CviJI	RGCY	9 cut(s)	13, 162, 380, 386, 542, 552, 564, 625, 636
CviKI_1	RGCY	9 cut(s)	13, 162, 380, 386, 542, 552, 564, 625, 636
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	138, 261
DpnI	GATC	4 cut(s)	80, 168, 258, 391
DpnII	GATC	4 cut(s)	78, 166, 256, 389
Eco47I	GGWCC	1 cut(s)	60
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	193
EcoRII	CCWGG	3 cut(s)	97, 184, 197
FaeI	CATG	2 cut(s)	173, 458
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	2 cut(s)	169, 454
FauNDI	CATATG	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	435, 637
FokI	GGATG	1 cut(s)	478
Fsp4HI	GCNGC	2 cut(s)	435, 637
FspBI	CTAG	3 cut(s)	14, 75, 664
GluI	GCNGC	2 cut(s)	435, 637
HapII	CCGG	4 cut(s)	153, 177, 593, 646
HgaI	GACGC	1 cut(s)	644
Hin1II	CATG	2 cut(s)	173, 458
HinfI	GANTC	2 cut(s)	353, 642
HpaII	CCGG	4 cut(s)	153, 177, 593, 646
HphI	GGTGA	2 cut(s)	37, 517
Hpy166II	GTNNAC	2 cut(s)	310, 516
Hpy188I	TCNGA	2 cut(s)	139, 281
Hpy188III	TCNNGA	6 cut(s)	177, 471, 526, 547, 576, 646
Hpy8I	GTNNAC	2 cut(s)	310, 516
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	4 cut(s)	73, 79, 183, 234
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 440
HpyF3I	CTNAG	2 cut(s)	138, 261
Hsp92II	CATG	2 cut(s)	173, 458
Kpn2I	TCCGGA	2 cut(s)	176, 645
Kzo9I	GATC	4 cut(s)	78, 166, 256, 389
LmnI	GCTCC	2 cut(s)	289, 413
Lsp1109I	GCAGC	2 cut(s)	421, 623
LweI	GCATC	2 cut(s)	23, 312
MabI	ACCWGGT	1 cut(s)	97
MaeI	CTAG	3 cut(s)	14, 75, 664
MaeIII	GTNAC	3 cut(s)	25, 340, 346
MalI	GATC	4 cut(s)	80, 168, 258, 391
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	4 cut(s)	78, 166, 256, 389
MboII	GAAGA	4 cut(s)	541, 544, 620, 661
MflI	RGATCY	3 cut(s)	78, 256, 389
MluCI	AATT	4 cut(s)	193, 419, 475, 571
MlyI	GAGTC	1 cut(s)	636
MmeI	TCCRAC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	30, 270, 404, 495
MroI	TCCGGA	2 cut(s)	176, 645
MroXI	GAANNNNTTC	1 cut(s)	193
MseI	TTAA	2 cut(s)	56, 129
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	4 cut(s)	153, 177, 593, 646
MspR9I	CCNGG	3 cut(s)	99, 186, 199
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	3 cut(s)	99, 186, 199
MwoI	GCNNNNNNNGC	2 cut(s)	251, 440
NdeI	CATATG	1 cut(s)	285
NdeII	GATC	4 cut(s)	78, 166, 256, 389
NlaIII	CATG	2 cut(s)	173, 458
NlaIV	GGNNCC	2 cut(s)	80, 258
NmuCI	GTSAC	2 cut(s)	25, 346
NspI	RCATGY	1 cut(s)	458
PciI	ACATGT	1 cut(s)	454
PctI	GAATGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	436, 638
PleI	GAGTC	1 cut(s)	636
PpsI	GAGTC	1 cut(s)	636
PpuMI	RGGWCCY	1 cut(s)	60
PscI	ACATGT	1 cut(s)	454
PshAI	GACNNNNGTC	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	97, 184, 197
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	3 cut(s)	97, 184, 197
PspN4I	GGNNCC	2 cut(s)	80, 258
PspPI	GGNCC	1 cut(s)	60
PspPPI	RGGWCCY	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	3 cut(s)	78, 256, 389
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SaqAI	TTAA	2 cut(s)	56, 129
SatI	GCNGC	2 cut(s)	435, 637
Sau3AI	GATC	4 cut(s)	78, 166, 256, 389
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	636
ScrFI	CCNGG	3 cut(s)	99, 186, 199
SetI	ASST	6 cut(s)	62, 103, 203, 388, 544, 554
SexAI	ACCWGGT	1 cut(s)	97
SfaNI	GCATC	2 cut(s)	23, 312
SfcI	CTRYAG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	4 cut(s)	193, 419, 475, 571
SsiI	CCGC	1 cut(s)	254
SspMI	CTAG	3 cut(s)	14, 75, 664
StyD4I	CCNGG	3 cut(s)	97, 184, 197
TaaI	ACNGT	1 cut(s)	346
TasI	AATT	4 cut(s)	193, 419, 475, 571
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	56, 129
Tru9I	TTAA	2 cut(s)	56, 129
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	2 cut(s)	25, 346
TseI	GCWGC	2 cut(s)	434, 636
Tsp45I	GTSAC	2 cut(s)	25, 346
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	193, 475
XceI	RCATGY	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	193
XspI	CTAG	3 cut(s)	14, 75, 664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.