Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Forward (+)

11252527 .. 11254689

Gene Structure 2163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGATACTGCTAGTAAGAGCTGGGAGCAAAAGTCATTAGTTGGGGAGATCATTCAAGGGATGGAGCTAGCACAACAGTTGAGGCTAAGTCTGAGCGCAACATCAACTTCATCAGAAACTAGGGAGTTTTTAGTGCAAAGGATATTGACCTCGTACGAGAAGGCCCTTTTGCTACTGCAATTGAGTGGCACGCCTCAAACACCTCATGTGGATGCAAAATCCATTGTGCCTCAGGAGTCTCGAATGTCTGCCAACACAAGCCCTTGTGGTGATGACTATAACCACAGGAGTTTCAACGATCATCAGGACCTGCACGAAATCTCCAAAAAGAGAAAGATCATGGCCAAATGGACTGACCATGTCATAAGGGTTAGCTCTGAGAATGGGATTGAAGGACCTCATGAAGATGGCCATAGCTGGAGAAAATATGGGCAGAAAGATATTCTAGGAGCCAAATATCCTAGAAGCTATTATAGATGCACCTTCAGGAACACACAAAACTGCTGGGCCACAAAGCAAGTGCAGAGATCAGATGAAGACCCTACCATATTTGAAATCACATACAAAGGAAAGCATACCTGCTCTCATGGCAGCACATCAGTTCCACCACCACCATCACCAGAACAGAAAGAACAAAAAAGACATAAGCGCGAGAACATTTCTGAACCACAGCAGTCTCAAGTGAACCAAATGAGCTTTCCAACTAATCTGAGGGTTGATACTGAGAATTTGGAAGACAGAGAGATGATGGCATCTCCATTCGCTTTTACTTCAACTTCATTTGGATGCATGATGAGTGGAGATGACTTCCTATCTCCGATGTTTGATAATGAGAATTTCTTTAGCGATTTCTCTCAACATTTGCTATCTCCAGCCGCAGGTGAATCAAATTACCACTTGGCACCACCAAGCCAAATGAGAAACATTGCAGTTAATGGGCAACTTTCAGAATCTGATCACACTGAGATAATCTCAGCCACCAATTCCTCAACCAATTCTCCAATTCCAGACATGGATTTCCCACTGGATCTAGTGGAATTCGACCCCAATTTCCAATTTGATGCTCCAGAATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

359

Amino Acids

40.73

Weight (kDa)

5.31

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	135 - 194	1.1e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	869
Acc36I	ACCTGC	3 cut(s)	318, 587, 869
AccB1I	GGYRCC	1 cut(s)	901
AccII	CGCG	1 cut(s)	651
AciI	CCGC	1 cut(s)	876
AclWI	GGATC	1 cut(s)	1035
AcoI	YGGCCR	2 cut(s)	342, 409
AcsI	RAATTY	4 cut(s)	727, 835, 1037, 1070
AcuI	CTGAAG	1 cut(s)	469
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	878
AgsI	TTSAA	5 cut(s)	56, 295, 392, 554, 774
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	6 cut(s)	21, 67, 375, 417, 468, 696
AluI	AGCT	6 cut(s)	21, 67, 375, 417, 468, 696
Alw26I	GTCTC	2 cut(s)	243, 681
AlwI	GGATC	1 cut(s)	1035
AlwNI	CAGNNNCTG	2 cut(s)	310, 953
AoxI	GGCC	4 cut(s)	162, 342, 409, 507
ApeKI	GCWGC	1 cut(s)	591
ApoI	RAATTY	4 cut(s)	727, 835, 1037, 1070
AspLEI	GCGC	2 cut(s)	98, 651
AspS9I	GGNCC	4 cut(s)	163, 307, 395, 507
AsuHPI	GGTGA	3 cut(s)	281, 609, 893
AsuNHI	GCTAGC	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	307, 395
AxyI	CCTNAGG	1 cut(s)	231
BalI	TGGCCA	2 cut(s)	344, 411
BanI	GGYRCC	1 cut(s)	901
BbsI	GAAGAC	2 cut(s)	543, 741
BbvI	GCAGC	1 cut(s)	603
BccI	CCATC	4 cut(s)	55, 401, 622, 742
BclI	TGATCA	1 cut(s)	955
BcoDI	GTCTC	2 cut(s)	243, 681
BfaI	CTAG	6 cut(s)	12, 68, 120, 446, 462, 1031
BfuAI	ACCTGC	3 cut(s)	318, 587, 869
BisI	GCNGC	2 cut(s)	592, 876
BlsI	GCNGC	2 cut(s)	593, 877
Bme18I	GGWCC	2 cut(s)	307, 395
BmgT120I	GGNCC	4 cut(s)	163, 307, 395, 507
BmiI	GGNNCC	2 cut(s)	451, 903
BmsI	GCATC	5 cut(s)	202, 467, 761, 776, 1051
BmtI	GCTAGC	1 cut(s)	71
BpiI	GAAGAC	2 cut(s)	543, 741
BplI	GAGNNNNNCTC	2 cut(s)	956, 988
BpmI	CTGGAG	3 cut(s)	439, 855, 1050
BpuEI	CTTGAG	1 cut(s)	663
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 305, 335, 982, 1012
Bsc4I	CCNNNNNNNGG	1 cut(s)	878
Bse1I	ACTGG	1 cut(s)	1029
Bse21I	CCTNAGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	924
BseGI	GGATG	3 cut(s)	66, 217, 791
BseLI	CCNNNNNNNGG	1 cut(s)	878
BseMI	GCAATG	1 cut(s)	924
BseMII	CTCAG	7 cut(s)	83, 245, 369, 701, 714, 954, 987
BseNI	ACTGG	1 cut(s)	1029
BseXI	GCAGC	1 cut(s)	603
BseYI	CCCAGC	2 cut(s)	21, 504
BsgI	GTGCAG	2 cut(s)	296, 542
Bsh1236I	CGCG	1 cut(s)	651
BshFI	GGCC	4 cut(s)	164, 344, 411, 509
BshNI	GGYRCC	1 cut(s)	901
BsiWI	CGTACG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	878
BsmAI	GTCTC	2 cut(s)	243, 681
BsnI	GGCC	4 cut(s)	164, 344, 411, 509
Bsp143I	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
BspACI	CCGC	1 cut(s)	876
BspANI	GGCC	4 cut(s)	164, 344, 411, 509
BspCNI	CTCAG	7 cut(s)	84, 244, 370, 702, 715, 955, 986
BspFNI	CGCG	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	451, 903
BspMI	ACCTGC	3 cut(s)	318, 587, 869
BspOI	GCTAGC	1 cut(s)	71
BspPI	GGATC	1 cut(s)	1035
BspT107I	GGYRCC	1 cut(s)	901
BsrDI	GCAATG	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	1029
BssMI	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
Bst4CI	ACNGT	1 cut(s)	78
BstC8I	GCNNGC	2 cut(s)	69, 191
BstDEI	CTNAG	8 cut(s)	86, 92, 231, 378, 710, 723, 963, 973
BstF5I	GGATG	3 cut(s)	66, 217, 791
BstFNI	CGCG	1 cut(s)	651
BstHHI	GCGC	2 cut(s)	98, 651
BstKTI	GATC	6 cut(s)	51, 301, 339, 530, 958, 1030
BstMAI	GTCTC	2 cut(s)	243, 681
BstMBI	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	1 cut(s)	603
BstV2I	GAAGAC	2 cut(s)	543, 741
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	164, 344, 411, 509
BtsCI	GGATG	3 cut(s)	66, 217, 791
BtsIMutI	CAGTG	2 cut(s)	960, 1022
BveI	ACCTGC	3 cut(s)	318, 587, 869
Cac8I	GCNNGC	2 cut(s)	69, 191
CaiI	CAGNNNCTG	2 cut(s)	310, 953
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	2 cut(s)	98, 651
Cfr13I	GGNCC	4 cut(s)	163, 307, 395, 507
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	7 cut(s)	206, 340, 359, 401, 587, 790, 1012
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	8 cut(s)	86, 92, 231, 378, 710, 723, 963, 973
DpnI	GATC	6 cut(s)	50, 300, 338, 529, 957, 1029
DpnII	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
EaeI	YGGCCR	2 cut(s)	342, 409
Eco47I	GGWCC	2 cut(s)	307, 395
Eco57I	CTGAAG	1 cut(s)	469
Eco81I	CCTNAGG	1 cut(s)	231
EcoO109I	RGGNCCY	3 cut(s)	163, 307, 395
EcoRI	GAATTC	1 cut(s)	1037
EcoT22I	ATGCAT	1 cut(s)	791
FaeI	CATG	7 cut(s)	209, 343, 362, 404, 590, 793, 1015
FatI	CATG	7 cut(s)	205, 339, 358, 400, 586, 789, 1011
FbaI	TGATCA	1 cut(s)	955
Fnu4HI	GCNGC	2 cut(s)	592, 876
FokI	GGATG	3 cut(s)	73, 224, 798
Fsp4HI	GCNGC	2 cut(s)	592, 876
FspBI	CTAG	6 cut(s)	12, 68, 120, 446, 462, 1031
GlaI	GCGC	2 cut(s)	97, 650
GluI	GCNGC	2 cut(s)	592, 876
GsaI	CCCAGC	2 cut(s)	25, 508
GsuI	CTGGAG	3 cut(s)	439, 855, 1050
HaeIII	GGCC	4 cut(s)	164, 344, 411, 509
HhaI	GCGC	2 cut(s)	98, 651
Hin1II	CATG	7 cut(s)	209, 343, 362, 404, 590, 793, 1015
Hin6I	GCGC	2 cut(s)	96, 649
HinP1I	GCGC	2 cut(s)	96, 649
HinfI	GANTC	3 cut(s)	236, 884, 950
HphI	GGTGA	3 cut(s)	281, 609, 893
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188III	TCNNGA	7 cut(s)	233, 240, 305, 401, 487, 1007, 1067
Hpy8I	GTNNAC	1 cut(s)	685
HpyAV	CCTTC	3 cut(s)	154, 386, 493
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	8 cut(s)	136, 178, 215, 313, 480, 523, 789, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	8 cut(s)	86, 92, 231, 378, 710, 723, 963, 973
Hsp92II	CATG	7 cut(s)	209, 343, 362, 404, 590, 793, 1015
HspAI	GCGC	2 cut(s)	96, 649
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
LmnI	GCTCC	4 cut(s)	25, 64, 449, 1069
Lsp1109I	GCAGC	1 cut(s)	603
LweI	GCATC	5 cut(s)	202, 467, 761, 776, 1051
MaeI	CTAG	6 cut(s)	12, 68, 120, 446, 462, 1031
MalI	GATC	6 cut(s)	50, 300, 338, 529, 957, 1029
MboI	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
MboII	GAAGA	3 cut(s)	416, 548, 746
MfeI	CAATTG	1 cut(s)	179
MflI	RGATCY	1 cut(s)	1027
MlsI	TGGCCA	2 cut(s)	344, 411
MluNI	TGGCCA	2 cut(s)	344, 411
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	725
MnlI	CCTC	8 cut(s)	75, 160, 204, 213, 240, 408, 705, 997
Mox20I	TGGCCA	2 cut(s)	344, 411
Mph1103I	ATGCAT	1 cut(s)	791
MscI	TGGCCA	2 cut(s)	344, 411
MseI	TTAA	1 cut(s)	933
MslI	CAYNNNNRTG	3 cut(s)	210, 405, 784
Msp20I	TGGCCA	2 cut(s)	344, 411
MunI	CAATTG	1 cut(s)	179
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	1 cut(s)	588
NdeII	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	7 cut(s)	209, 343, 362, 404, 590, 793, 1015
NlaIV	GGNNCC	2 cut(s)	451, 903
NsiI	ATGCAT	1 cut(s)	791
PagI	TCATGA	1 cut(s)	400
PaqCI	CACCTGC	1 cut(s)	869
PfeI	GAWTC	2 cut(s)	884, 950
Pfl23II	CGTACG	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	593, 877
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	2 cut(s)	307, 395
Psp5II	RGGWCCY	2 cut(s)	307, 395
PspFI	CCCAGC	2 cut(s)	21, 504
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	2 cut(s)	451, 903
PspPI	GGNCC	4 cut(s)	163, 307, 395, 507
PspPPI	RGGWCCY	2 cut(s)	307, 395
PstNI	CAGNNNCTG	2 cut(s)	310, 953
PsuI	RGATCY	1 cut(s)	1027
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	3 cut(s)	210, 405, 784
SaqAI	TTAA	1 cut(s)	933
SatI	GCNGC	2 cut(s)	592, 876
Sau3AI	GATC	6 cut(s)	48, 298, 336, 527, 955, 1027
Sau96I	GGNCC	4 cut(s)	163, 307, 395, 507
SchI	GAGTC	1 cut(s)	245
SfaNI	GCATC	5 cut(s)	202, 467, 761, 776, 1051
SinI	GGWCC	2 cut(s)	307, 395
SmiMI	CAYNNNNRTG	3 cut(s)	210, 405, 784
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
SsiI	CCGC	1 cut(s)	876
SspMI	CTAG	6 cut(s)	12, 68, 120, 446, 462, 1031
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	241, 1041
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	2 cut(s)	884, 950
Tru1I	TTAA	1 cut(s)	933
Tru9I	TTAA	1 cut(s)	933
TscAI	CASTG	2 cut(s)	967, 1029
TseI	GCWGC	1 cut(s)	591
TspDTI	ATGAA	4 cut(s)	99, 417, 549, 768
TspRI	CASTG	2 cut(s)	967, 1029
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	307, 395
XapI	RAATTY	4 cut(s)	727, 835, 1037, 1070
XspI	CTAG	6 cut(s)	12, 68, 120, 446, 462, 1031
Zsp2I	ATGCAT	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.