Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

11414695 .. 11416444

Gene Structure 1750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31817.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAATGGTGTCTCTCGTCATCTTCGAGCTTCTTCACTTCTTTCATTAATTCGCAGCTATGGTGGAATCAATTCGGTCTGTCGATTTTCGTCTCAATCTGATGGCTTCTCTGGAGGGAGATTCAGAGAGCAAGTGCCAGTTTCTGGAGAGTCTGCAAATAATTCAGGCTTATCAAACACGGGAAGAATCGGTTCCTCTCCGGAGCCTAATCCTTCGACTTTGAGAACTTTTGGTGATATGAAAGCAGGCTTGTTAAACAGAGGAGTCAATGGTTTCTCGGCTCCTAATGCTCCTCCTACCTTCAAAAGTTCACTGAGATCAAGATTACCAAACTCTCTACCTGATCAGTTCGGTCAGACGAATCCAGGCTTACCAAACACGGGAGGAAGCGGATTCTCTGCTCCAAGTTTATCAAGCTACGAGAATTTCACTCAATCTTCTTCGCTTCTTAAGGAGAATTCCCGCAGTGGAGGGAAGTCAAGCGACCTGGATTTTGTTAGAGAAGTAATAGAAGATGAAGGAAGGAGAACCGCAGGGATATTCTCTCATTTCCAACGCCCAAACCTCGAAACGAATGCTGACATCATTCACATCAAGATGTTGAGGAACAACACTTTTGTCACGGTTACAGATTCCAAAGGAAACGTCAAATGCAAAGCTACATCTGGTAGTTTACCCGATCTGAAAGGTGGAAGGAAGATGACGAATTACACAGCTGATGCAACCGCTGAAAACATTGGGAGAAGAGCTAAGGCTATGGGGCTGAAATCTGTGGTGGTTAAGGTGAACGGATTTACGCATTTCGGAAAGAAGAAGAAAGCTATTATCGCGTTTAGAGACGGTTTCACCAACTCGAGGTCTGATCAGAATCCGATAGTCTACATCGAGGACACTACTAGGAAAGCTCATAATGGTTGCAGATTACCAAGGAAACGTCGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

314

Amino Acids

33.93

Weight (kDa)

10.48

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	195 - 313	1.1e-15	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	879
AccII	CGCG	1 cut(s)	830
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	4 cut(s)	390, 463, 531, 726
AcsI	RAATTY	2 cut(s)	424, 457
AfiI	CCNNNNNNNGG	3 cut(s)	143, 380, 855
AflII	CTTAAG	1 cut(s)	449
AgsI	TTSAA	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	364, 486
AluBI	AGCT	8 cut(s)	29, 57, 417, 659, 716, 749, 821, 905
AluI	AGCT	8 cut(s)	29, 57, 417, 659, 716, 749, 821, 905
Alw26I	GTCTC	3 cut(s)	16, 96, 831
AlwNI	CAGNNNCTG	1 cut(s)	143
Ama87I	CYCGRG	1 cut(s)	853
Aor13HI	TCCGGA	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	54
ApoI	RAATTY	2 cut(s)	424, 457
ArsI	GACNNNNNNTTYG	4 cut(s)	476, 508, 630, 662
AseI	ATTAAT	1 cut(s)	47
Asp700I	GAANNNNTTC	2 cut(s)	70, 190
AsuHPI	GGTGA	3 cut(s)	245, 796, 838
AvaI	CYCGRG	1 cut(s)	853
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	1 cut(s)	95
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	2 cut(s)	366, 488
BclI	TGATCA	2 cut(s)	343, 862
BcoDI	GTCTC	3 cut(s)	16, 96, 831
BfaI	CTAG	1 cut(s)	897
BfrI	CTTAAG	1 cut(s)	449
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	366, 488
BmeT110I	CYCGRG	1 cut(s)	853
BmiI	GGNNCC	3 cut(s)	193, 204, 282
BmrFI	CCNGG	2 cut(s)	366, 488
BmsI	GCATC	1 cut(s)	709
BpmI	CTGGAG	2 cut(s)	132, 165
Bpu10I	CCTNAGC	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	867
BsaJI	CCNNGG	1 cut(s)	926
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 380, 855
Bse1I	ACTGG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	867
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	366, 488
BseDI	CCNNGG	1 cut(s)	926
BseJI	GATNNNNATC	1 cut(s)	867
BseLI	CCNNNNNNNGG	3 cut(s)	143, 380, 855
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	2 cut(s)	276, 282
BseXI	GCAGC	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	830
BsiHKCI	CYCGRG	1 cut(s)	853
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	143, 380, 855
BsmAI	GTCTC	3 cut(s)	16, 96, 831
BsmBI	CGTCTC	2 cut(s)	96, 831
BsmI	GAATGC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	853
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	4 cut(s)	317, 343, 679, 862
BspACI	CCGC	4 cut(s)	390, 463, 531, 726
BspCNI	CTCAG	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	830
BspLI	GGNNCC	3 cut(s)	193, 204, 282
BspQI	GCTCTTC	1 cut(s)	739
BspTI	CTTAAG	1 cut(s)	449
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	926
BssMI	GATC	4 cut(s)	317, 343, 679, 862
BssT1I	CCWWGG	1 cut(s)	926
Bst2UI	CCWGG	2 cut(s)	366, 488
Bst4CI	ACNGT	2 cut(s)	625, 842
Bst6I	CTCTTC	1 cut(s)	739
BstAFI	CTTAAG	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	314, 750
BstFNI	CGCG	1 cut(s)	830
BstKTI	GATC	4 cut(s)	320, 346, 682, 865
BstMAI	GTCTC	3 cut(s)	16, 96, 831
BstMBI	GATC	4 cut(s)	317, 343, 679, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 827
BstNI	CCWGG	2 cut(s)	366, 488
BstSCI	CCNGG	2 cut(s)	364, 486
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	2 cut(s)	311, 472
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	143
DdeI	CTNAG	2 cut(s)	314, 750
DpnI	GATC	4 cut(s)	319, 345, 681, 864
DpnII	GATC	4 cut(s)	317, 343, 679, 862
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
Eco130I	CCWWGG	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	364, 486
EcoT14I	CCWWGG	1 cut(s)	926
ErhI	CCWWGG	1 cut(s)	926
Esp3I	CGTCTC	2 cut(s)	96, 831
FaiI	YATR	4 cut(s)	60, 239, 758, 909
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	2 cut(s)	343, 862
FblI	GTMKAC	1 cut(s)	879
Fnu4HI	GCNGC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	897
GluI	GCNGC	1 cut(s)	55
GsuI	CTGGAG	2 cut(s)	132, 165
HapII	CCGG	1 cut(s)	200
HinfI	GANTC	9 cut(s)	66, 120, 149, 186, 264, 361, 393, 632, 868
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	245, 796, 838
Hpy166II	GTNNAC	4 cut(s)	311, 674, 787, 880
Hpy188I	TCNGA	8 cut(s)	100, 125, 357, 684, 806, 862, 867, 873
Hpy188III	TCNNGA	5 cut(s)	111, 144, 200, 321, 595
Hpy8I	GTNNAC	4 cut(s)	311, 674, 787, 880
Hpy99I	CGWCG	1 cut(s)	939
HpyAV	CCTTC	5 cut(s)	222, 310, 512, 516, 687
HpyCH4III	ACNGT	2 cut(s)	625, 842
HpyCH4IV	ACGT	2 cut(s)	645, 934
HpyCH4V	TGCA	4 cut(s)	155, 654, 722, 918
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 827
HpyF3I	CTNAG	2 cut(s)	314, 750
HpySE526I	ACGT	2 cut(s)	645, 934
Kpn2I	TCCGGA	1 cut(s)	199
Ksp22I	TGATCA	2 cut(s)	343, 862
Kzo9I	GATC	4 cut(s)	317, 343, 679, 862
LguI	GCTCTTC	1 cut(s)	739
LmnI	GCTCC	4 cut(s)	202, 286, 295, 406
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	1 cut(s)	709
MaeI	CTAG	1 cut(s)	897
MaeII	ACGT	2 cut(s)	645, 934
MaeIII	GTNAC	2 cut(s)	619, 625
MalI	GATC	4 cut(s)	319, 345, 681, 864
MboI	GATC	4 cut(s)	317, 343, 679, 862
MluCI	AATT	6 cut(s)	48, 70, 160, 424, 457, 706
MlyI	GAGTC	2 cut(s)	158, 273
MmeI	TCCRAC	1 cut(s)	577
MroI	TCCGGA	1 cut(s)	199
MroXI	GAANNNNTTC	2 cut(s)	70, 190
MseI	TTAA	4 cut(s)	47, 254, 450, 780
MslI	CAYNNNNRTG	1 cut(s)	596
MspA1I	CMGCKG	2 cut(s)	716, 728
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	366, 488
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	2 cut(s)	366, 488
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	2 cut(s)	287, 827
NdeII	GATC	4 cut(s)	317, 343, 679, 862
NlaIV	GGNNCC	3 cut(s)	193, 204, 282
NmeAIII	GCCGAG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	619
PaeR7I	CTCGAG	1 cut(s)	853
PciSI	GCTCTTC	1 cut(s)	739
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	1 cut(s)	580
PdmI	GAANNNNTTC	2 cut(s)	70, 190
PfeI	GAWTC	7 cut(s)	66, 120, 186, 361, 393, 632, 868
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	56
PleI	GAGTC	2 cut(s)	157, 272
PpsI	GAGTC	2 cut(s)	157, 272
PshBI	ATTAAT	1 cut(s)	47
Psp6I	CCWGG	2 cut(s)	364, 486
PspGI	CCWGG	2 cut(s)	364, 486
PspN4I	GGNNCC	3 cut(s)	193, 204, 282
PspXI	VCTCGAGB	1 cut(s)	853
PstNI	CAGNNNCTG	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	716
RseI	CAYNNNNRTG	1 cut(s)	596
SapI	GCTCTTC	1 cut(s)	739
SaqAI	TTAA	4 cut(s)	47, 254, 450, 780
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	4 cut(s)	317, 343, 679, 862
SchI	GAGTC	2 cut(s)	158, 273
ScrFI	CCNGG	2 cut(s)	366, 488
SfaNI	GCATC	1 cut(s)	709
Sfr274I	CTCGAG	1 cut(s)	853
SlaI	CTCGAG	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	449, 853
SmoI	CTYRAG	2 cut(s)	449, 853
Sse9I	AATT	6 cut(s)	48, 70, 160, 424, 457, 706
SsiI	CCGC	4 cut(s)	390, 463, 531, 726
SspMI	CTAG	1 cut(s)	897
StyD4I	CCNGG	2 cut(s)	364, 486
StyI	CCWWGG	1 cut(s)	926
TaaI	ACNGT	2 cut(s)	625, 842
TaiI	ACGT	2 cut(s)	648, 937
TaqI	TCGA	6 cut(s)	25, 82, 215, 567, 854, 885
TaqII	GACCGA	2 cut(s)	64, 341
TasI	AATT	6 cut(s)	48, 70, 160, 424, 457, 706
TfiI	GAWTC	7 cut(s)	66, 120, 186, 361, 393, 632, 868
Tru1I	TTAA	4 cut(s)	47, 254, 450, 780
Tru9I	TTAA	4 cut(s)	47, 254, 450, 780
TscAI	CASTG	2 cut(s)	318, 472
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	54
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	4 cut(s)	17, 33, 254, 531
TspGWI	ACGGA	1 cut(s)	804
TspRI	CASTG	2 cut(s)	318, 472
Van91I	CCANNNNNTGG	1 cut(s)	143
Vha464I	CTTAAG	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	47
XapI	RAATTY	2 cut(s)	424, 457
XhoI	CTCGAG	1 cut(s)	853
XmiI	GTMKAC	1 cut(s)	879
XmnI	GAANNNNTTC	2 cut(s)	70, 190
XspI	CTAG	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.