Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

30460880 .. 30461904

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG281800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTCTCTCGGCTAGTCCCTCGGGTGACCAGATGCCATTCCCACCTCACTGCTTTAAGGTCCTTCTCCTTCTCTAGGATCCCACCCCCACCAGGTTCTGCAGATAGTTTTCAGCAGGGTGTTAATGCTTCTGAGAATGTTGCAACCGGAACGGGCTTGGATCATGTCACGGGATTTCCTGGAAGGAATTCCAGGTCTATGGACTTTGTTAGGGGAGTTATAGACCAAGATGGAAGGGCAAACCGAGCGGATCCTCAGTTTCAGTTCCCTATCAGACATATGGAGCAGAATGCTGATGTAGTCCACATAAAGTTGATGCGTAATAATACTTTTGTTACCGTCACAGATTCAAAGGGGAACAAGAAACTTGGGGCTTCGGCTGGATCTGTACCAGAAATGAAAGGAGGAGCAAAATTGTCTCGCTATGCTGCCGAAGCAACTGCAGAACATGTTGGACGGATGTCCAGAAATTTTGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGGTTTACTTATTTCAAGAAGAAGAAGCAAGCTATCTTGAGCTGGAAAGACGGCTTTACTAATTCCAGAGTGGGTCAAAATCCAGTTATATACATTGAAGATACCACCCGAAAGCCCCATAATGGCTGCCGACTCCGGAAAAAGCGTCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

219

Amino Acids

24.41

Weight (kDa)

10.97

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	100 - 218	1.1e-14	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	639
AciI	CCGC	1 cut(s)	248
AclWI	GGATC	6 cut(s)	73, 86, 168, 245, 258, 391
AcsI	RAATTY	2 cut(s)	187, 469
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	75, 92, 626
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	4 cut(s)	351, 481, 520, 602
AjnI	CCWGG	3 cut(s)	91, 178, 191
AluBI	AGCT	2 cut(s)	536, 546
AluI	AGCT	2 cut(s)	536, 546
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	6 cut(s)	73, 86, 168, 245, 258, 391
AlwNI	CAGNNNCTG	1 cut(s)	98
Ama87I	CYCGRG	1 cut(s)	21
Aor13HI	TCCGGA	1 cut(s)	639
ApeKI	GCWGC	2 cut(s)	428, 630
ApoI	RAATTY	2 cut(s)	187, 469
Asp700I	GAANNNNTTC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	37, 511
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	1 cut(s)	60
BamHI	GGATCC	2 cut(s)	78, 250
BbvI	GCAGC	2 cut(s)	415, 617
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	571
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	3 cut(s)	93, 180, 193
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	3 cut(s)	14, 75, 658
BfmI	CTRYAG	2 cut(s)	99, 441
BisI	GCNGC	2 cut(s)	429, 631
BlsI	GCNGC	2 cut(s)	430, 632
Bme1390I	CCNGG	3 cut(s)	93, 180, 193
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	2 cut(s)	80, 252
BmrFI	CCNGG	3 cut(s)	93, 180, 193
BmsI	GCATC	2 cut(s)	23, 306
BoxI	GACNNNNGTC	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	2 cut(s)	146, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 92, 626
Bse1I	ACTGG	1 cut(s)	587
BseAI	TCCGGA	1 cut(s)	639
BseBI	CCWGG	3 cut(s)	93, 180, 193
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	75, 92, 626
BseMII	CTCAG	2 cut(s)	123, 269
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	415, 617
BsiHKCI	CYCGRG	1 cut(s)	21
BsiSI	CCGG	2 cut(s)	147, 640
BslFI	GGGAC	1 cut(s)	2
BslI	CCNNNNNNNGG	3 cut(s)	75, 92, 626
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	295
BsoBI	CYCGRG	1 cut(s)	21
Bsp13I	TCCGGA	1 cut(s)	639
Bsp143I	GATC	4 cut(s)	78, 160, 250, 383
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	124, 268
BspEI	TCCGGA	1 cut(s)	639
BspLI	GGNNCC	2 cut(s)	80, 252
BspMAI	CTGCAG	2 cut(s)	103, 445
BspPI	GGATC	6 cut(s)	73, 86, 168, 245, 258, 391
BsrBI	CCGCTC	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	587
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	4 cut(s)	78, 160, 250, 383
Bst2UI	CCWGG	3 cut(s)	93, 180, 193
Bst4CI	ACNGT	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	2 cut(s)	132, 255
BstEII	GGTNACC	1 cut(s)	25
BstENI	CCTNNNNNAGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	465
BstKTI	GATC	4 cut(s)	81, 163, 253, 386
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	4 cut(s)	78, 160, 250, 383
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 434
BstNI	CCWGG	3 cut(s)	93, 180, 193
BstNSI	RCATGY	1 cut(s)	452
BstPAI	GACNNNNGTC	1 cut(s)	460
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	3 cut(s)	91, 178, 191
BstSFI	CTRYAG	2 cut(s)	99, 441
BstV1I	GCAGC	2 cut(s)	415, 617
BstX2I	RGATCY	3 cut(s)	78, 250, 383
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	3 cut(s)	78, 250, 383
BtsCI	GGATG	1 cut(s)	465
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	638
CsiI	ACCWGGT	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	389
CviAII	CATG	2 cut(s)	164, 449
CviJI	RGCY	9 cut(s)	13, 156, 374, 380, 536, 546, 558, 619, 630
CviKI_1	RGCY	9 cut(s)	13, 156, 374, 380, 536, 546, 558, 619, 630
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	2 cut(s)	132, 255
DpnI	GATC	4 cut(s)	80, 162, 252, 385
DpnII	GATC	4 cut(s)	78, 160, 250, 383
Eco47I	GGWCC	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	21
Eco91I	GGTNACC	1 cut(s)	25
EcoNI	CCTNNNNNAGG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	187
EcoRII	CCWGG	3 cut(s)	91, 178, 191
FaeI	CATG	2 cut(s)	167, 452
FaqI	GGGAC	1 cut(s)	2
FatI	CATG	2 cut(s)	163, 448
FauNDI	CATATG	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	429, 631
FokI	GGATG	1 cut(s)	472
Fsp4HI	GCNGC	2 cut(s)	429, 631
FspBI	CTAG	3 cut(s)	14, 75, 658
GluI	GCNGC	2 cut(s)	429, 631
HapII	CCGG	2 cut(s)	147, 640
HgaI	GACGC	1 cut(s)	638
Hin1II	CATG	2 cut(s)	167, 452
HinfI	GANTC	2 cut(s)	347, 636
HpaII	CCGG	2 cut(s)	147, 640
HphI	GGTGA	2 cut(s)	37, 511
Hpy166II	GTNNAC	2 cut(s)	304, 510
Hpy188I	TCNGA	2 cut(s)	133, 275
Hpy188III	TCNNGA	5 cut(s)	465, 520, 541, 570, 640
Hpy8I	GTNNAC	2 cut(s)	304, 510
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	4 cut(s)	73, 79, 177, 228
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4V	TGCA	3 cut(s)	101, 143, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 434
HpyF3I	CTNAG	2 cut(s)	132, 255
Hsp92II	CATG	2 cut(s)	167, 452
Kpn2I	TCCGGA	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	78, 160, 250, 383
LmnI	GCTCC	2 cut(s)	283, 407
Lsp1109I	GCAGC	2 cut(s)	415, 617
LweI	GCATC	2 cut(s)	23, 306
MabI	ACCWGGT	1 cut(s)	91
MaeI	CTAG	3 cut(s)	14, 75, 658
MaeIII	GTNAC	4 cut(s)	25, 166, 334, 340
MalI	GATC	4 cut(s)	80, 162, 252, 385
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	4 cut(s)	78, 160, 250, 383
MboII	GAAGA	3 cut(s)	535, 538, 614
MflI	RGATCY	3 cut(s)	78, 250, 383
MluCI	AATT	4 cut(s)	187, 413, 469, 565
MlyI	GAGTC	1 cut(s)	630
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	5 cut(s)	30, 56, 264, 398, 489
MroI	TCCGGA	1 cut(s)	639
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	2 cut(s)	56, 123
MspI	CCGG	2 cut(s)	147, 640
MspR9I	CCNGG	3 cut(s)	93, 180, 193
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	3 cut(s)	93, 180, 193
MwoI	GCNNNNNNNGC	2 cut(s)	245, 434
NdeI	CATATG	1 cut(s)	279
NdeII	GATC	4 cut(s)	78, 160, 250, 383
NlaIII	CATG	2 cut(s)	167, 452
NlaIV	GGNNCC	2 cut(s)	80, 252
NmuCI	GTSAC	3 cut(s)	25, 166, 340
NspI	RCATGY	1 cut(s)	452
PciI	ACATGT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	347
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	430, 632
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
PpuMI	RGGWCCY	1 cut(s)	60
PscI	ACATGT	1 cut(s)	448
PshAI	GACNNNNGTC	1 cut(s)	460
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	3 cut(s)	91, 178, 191
PspEI	GGTNACC	1 cut(s)	25
PspGI	CCWGG	3 cut(s)	91, 178, 191
PspN4I	GGNNCC	2 cut(s)	80, 252
PspPI	GGNCC	1 cut(s)	60
PspPPI	RGGWCCY	1 cut(s)	60
PstI	CTGCAG	2 cut(s)	103, 445
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	78, 250, 383
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	56, 123
SatI	GCNGC	2 cut(s)	429, 631
Sau3AI	GATC	4 cut(s)	78, 160, 250, 383
Sau96I	GGNCC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	630
ScrFI	CCNGG	3 cut(s)	93, 180, 193
SetI	ASST	6 cut(s)	48, 62, 97, 197, 538, 548
SexAI	ACCWGGT	1 cut(s)	91
SfaNI	GCATC	2 cut(s)	23, 306
SfcI	CTRYAG	2 cut(s)	99, 441
SinI	GGWCC	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	4 cut(s)	187, 413, 469, 565
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	3 cut(s)	14, 75, 658
StyD4I	CCNGG	3 cut(s)	91, 178, 191
TaaI	ACNGT	1 cut(s)	340
TasI	AATT	4 cut(s)	187, 413, 469, 565
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	56, 123
Tru9I	TTAA	2 cut(s)	56, 123
TscAI	CASTG	1 cut(s)	55
TseFI	GTSAC	3 cut(s)	25, 166, 340
TseI	GCWGC	2 cut(s)	428, 630
Tsp45I	GTSAC	3 cut(s)	25, 166, 340
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	73
XapI	RAATTY	2 cut(s)	187, 469
XceI	RCATGY	1 cut(s)	452
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	3 cut(s)	14, 75, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.