Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

29983985 .. 29985916

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG293500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTGGGTTTTTGCAGGTTCTGCATCTAGTTTTCAGCAGGGTGTTAATGCTTCTGAGAATGTTGCAACCGGAACGGGCTTGGATCATGTCACGGGATTTCCTGGAAGGAATTCCAGGTCTATGGACTTTGTTAGGGGAGTTATAGACCAAGATGGAAGGGCAAACCGAGCGGATCCTCAGTTTCAGTTCCCTATCAGACATATGGAGCAGAATGCTGATGTAGTCCACATAAAGTTGATGCGTAATAATACTTTTGTTACCGTCACAGATTCAAAGGGGAACAAGAAACTTGGGGCTTCAGCTGGATCTGTACCAGAAATGAAAGGAGGAGCAAAATTGTCTCGCTATGCTGCTGAAGCAACTGCAGAACATGTTGGACGGATGTCCAGAAATTTTGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGGTTTACTTATTTCAAGAAGAAGAAGCAAGCTATCTTGAGCTGGAAAGACGGCTTTACTAATTCCAGAGTGGGTCAAAATCCGGTTATATACATTGAAGATACCACCCGAAAGCCCCATAATGGCTGCCGACTCCGGAAGAAGCGTCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

193

Amino Acids

21.44

Weight (kDa)

10.62

Isoelectric Point (pI)

33.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	74 - 192	8.5e-15	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	5
AccBSI	CCGCTC	1 cut(s)	170
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	4 cut(s)	90, 167, 180, 313
AcsI	RAATTY	2 cut(s)	109, 391
AcuI	CTGAAG	2 cut(s)	282, 375
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	273, 403, 442, 524
AjnI	CCWGG	2 cut(s)	100, 113
AluBI	AGCT	3 cut(s)	302, 458, 468
AluI	AGCT	3 cut(s)	302, 458, 468
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	4 cut(s)	90, 167, 180, 313
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	561
ApeKI	GCWGC	2 cut(s)	350, 552
ApoI	RAATTY	2 cut(s)	109, 391
Asp700I	GAANNNNTTC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	172
BbvI	GCAGC	2 cut(s)	337, 539
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	2 cut(s)	102, 115
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	2 cut(s)	27, 580
BfmI	CTRYAG	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	5
BisI	GCNGC	2 cut(s)	351, 553
BlsI	GCNGC	2 cut(s)	352, 554
Bme1390I	CCNGG	2 cut(s)	102, 115
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	102, 115
BmsI	GCATC	2 cut(s)	32, 228
BoxI	GACNNNNGTC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	484
BsaWI	WCCGGW	3 cut(s)	68, 508, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	548
BseAI	TCCGGA	1 cut(s)	561
BseBI	CCWGG	2 cut(s)	102, 115
BseGI	GGATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	548
BseMII	CTCAG	2 cut(s)	45, 191
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	337, 539
BsiSI	CCGG	3 cut(s)	69, 509, 562
BslI	CCNNNNNNNGG	1 cut(s)	548
BsmAI	GTCTC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	217
Bsp13I	TCCGGA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	82, 172, 305
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	46, 190
BspEI	TCCGGA	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	367
BspMI	ACCTGC	1 cut(s)	5
BspPI	GGATC	4 cut(s)	90, 167, 180, 313
BsrBI	CCGCTC	1 cut(s)	170
BssMI	GATC	3 cut(s)	82, 172, 305
Bst2UI	CCWGG	2 cut(s)	102, 115
Bst4CI	ACNGT	1 cut(s)	262
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	2 cut(s)	54, 177
BstF5I	GGATG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	85, 175, 308
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	82, 172, 305
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 167, 356
BstNI	CCWGG	2 cut(s)	102, 115
BstNSI	RCATGY	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	382
BstSCI	CCNGG	2 cut(s)	100, 113
BstSFI	CTRYAG	1 cut(s)	363
BstV1I	GCAGC	2 cut(s)	337, 539
BstX2I	RGATCY	2 cut(s)	172, 305
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	2 cut(s)	172, 305
BtsCI	GGATG	1 cut(s)	387
BveI	ACCTGC	1 cut(s)	5
Cac8I	GCNNGC	1 cut(s)	456
CaiI	CAGNNNCTG	1 cut(s)	20
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	2 cut(s)	86, 371
CviJI	RGCY	8 cut(s)	78, 296, 302, 458, 468, 480, 541, 552
CviKI_1	RGCY	8 cut(s)	78, 296, 302, 458, 468, 480, 541, 552
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	2 cut(s)	54, 177
DpnI	GATC	3 cut(s)	84, 174, 307
DpnII	GATC	3 cut(s)	82, 172, 305
Eco57I	CTGAAG	2 cut(s)	282, 375
EcoRI	GAATTC	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	100, 113
FaeI	CATG	2 cut(s)	89, 374
FatI	CATG	2 cut(s)	85, 370
FauNDI	CATATG	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	351, 553
FokI	GGATG	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	351, 553
FspBI	CTAG	2 cut(s)	27, 580
GluI	GCNGC	2 cut(s)	351, 553
HapII	CCGG	3 cut(s)	69, 509, 562
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	2 cut(s)	89, 374
HinfI	GANTC	2 cut(s)	269, 558
HpaII	CCGG	3 cut(s)	69, 509, 562
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	2 cut(s)	226, 432
Hpy188I	TCNGA	2 cut(s)	55, 197
Hpy188III	TCNNGA	5 cut(s)	387, 442, 463, 492, 562
Hpy8I	GTNNAC	2 cut(s)	226, 432
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	2 cut(s)	99, 150
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	14, 23, 65, 365
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 167, 356
HpyF3I	CTNAG	2 cut(s)	54, 177
Hsp92II	CATG	2 cut(s)	89, 374
Kpn2I	TCCGGA	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	82, 172, 305
LmnI	GCTCC	2 cut(s)	205, 329
Lsp1109I	GCAGC	2 cut(s)	337, 539
LweI	GCATC	2 cut(s)	32, 228
MaeI	CTAG	2 cut(s)	27, 580
MaeIII	GTNAC	3 cut(s)	88, 256, 262
MalI	GATC	3 cut(s)	84, 174, 307
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	3 cut(s)	82, 172, 305
MboII	GAAGA	4 cut(s)	457, 460, 536, 577
MflI	RGATCY	2 cut(s)	172, 305
MluCI	AATT	4 cut(s)	109, 335, 391, 487
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	355
MnlI	CCTC	3 cut(s)	186, 320, 411
MroI	TCCGGA	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	109
MseI	TTAA	1 cut(s)	45
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	3 cut(s)	69, 509, 562
MspR9I	CCNGG	2 cut(s)	102, 115
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	102, 115
MwoI	GCNNNNNNNGC	3 cut(s)	20, 167, 356
NdeI	CATATG	1 cut(s)	201
NdeII	GATC	3 cut(s)	82, 172, 305
NlaIII	CATG	2 cut(s)	89, 374
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	2 cut(s)	88, 262
NspI	RCATGY	1 cut(s)	374
PciI	ACATGT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	352, 554
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PscI	ACATGT	1 cut(s)	370
PshAI	GACNNNNGTC	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	100, 113
PspGI	CCWGG	2 cut(s)	100, 113
PspN4I	GGNNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	172, 305
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	2 cut(s)	351, 553
Sau3AI	GATC	3 cut(s)	82, 172, 305
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	102, 115
SetI	ASST	5 cut(s)	19, 119, 304, 460, 470
SfaNI	GCATC	2 cut(s)	32, 228
SfcI	CTRYAG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
Sse9I	AATT	4 cut(s)	109, 335, 391, 487
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	27, 580
StyD4I	CCNGG	2 cut(s)	100, 113
TaaI	ACNGT	1 cut(s)	262
TasI	AATT	4 cut(s)	109, 335, 391, 487
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	88, 262
TseI	GCWGC	2 cut(s)	350, 552
Tsp45I	GTSAC	2 cut(s)	88, 262
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	394
XapI	RAATTY	2 cut(s)	109, 391
XceI	RCATGY	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	109
XspI	CTAG	2 cut(s)	27, 580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.