Prupe.8G075800_v2.0.a1

ribosomal protein S11

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
11018085 .. 11019680
1596 bp
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UTR
Exon/CDS
Intron
Prupe.8G075800.1

Sequence Viewer

Length: 630 bp
ATGTATTCGTCTCTCTCTCGGCTGTCTTCGTCTCTGGTTCATCGCCTTGCTAGATGCCAGAGCCAGCTCATTGCGTCGAGGTCTTTCTCTGTCTCTGGAACGCCACCAGGTCCAGTAGAGAATTTTCAACAAGGTTTCAATTCTTCTGAGAATGTTTCAAGGAATTCCAGGTCTATGAACTTTGTGAGGGGGATTCTAGAGGAGGATGGAAAGGAAAACATTGGTTTTTCTCAGTTTCCCCGATATAATATGGAGCAAAATGCTGATATTGTCCATATAAAGCTGATGAAAAACAATACCTTTGTTACTGTGACGGACTCAAAGGGGAAGAAGAAACTTGGGGCCTCAGCCGGGTCGTTACCAGGAATGAAAGGAGGACCAAAATTGTCTAAGTATGCTGCTGAAGCAACTGCAGAACACGTTGGACGGATGGCAAGAAATTTCGGGTTAAAATCAGTTGTAGTGAAGGTGAAAGGGTTTACATATTTTAAGAAGAAAAGGCAAGCCATTGTGAGCTGGAAAGAGGGCTTTACCAATTCCAAAGTGGGTTTGAATCCGATTGTATATATTGAAGATACAACCCGAAAACCCCATAATGGCTGTCGCCTCCCAAAGAAACGTCGCGTGTAA

Protein Analysis

210

Amino Acids

23.21

Weight (kDa)

10.41

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014241)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 624
AcsI RAATTY 3 cut(s) 121, 163, 439
AcuI CTGAAG 1 cut(s) 423
AfiI CCNNNNNNNGG 2 cut(s) 351, 596
AflIII ACRYGT 1 cut(s) 418
AgsI TTSAA 5 cut(s) 128, 139, 159, 553, 572
AjnI CCWGG 3 cut(s) 106, 167, 361
AluBI AGCT 3 cut(s) 67, 283, 516
AluI AGCT 3 cut(s) 67, 283, 516
Alw26I GTCTC 3 cut(s) 15, 36, 97
AoxI GGCC 1 cut(s) 342
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 3 cut(s) 121, 163, 439
AspS9I GGNCC 3 cut(s) 110, 342, 377
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 2 cut(s) 110, 377
BbsI GAAGAC 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 385
BccI CCATC 2 cut(s) 200, 424
BciT130I CCWGG 3 cut(s) 108, 169, 363
BcnI CCSGG 1 cut(s) 352
BcoDI GTCTC 3 cut(s) 15, 36, 97
BfaI CTAG 2 cut(s) 51, 197
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 4 cut(s) 108, 169, 352, 363
Bme18I GGWCC 2 cut(s) 110, 377
BmgT120I GGNCC 3 cut(s) 110, 342, 377
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 4 cut(s) 108, 169, 352, 363
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 1 cut(s) 346
BpuMI CCSGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 596
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 3 cut(s) 108, 169, 363
BseGI GGATG 2 cut(s) 211, 435
BseLI CCNNNNNNNGG 2 cut(s) 351, 596
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 3 cut(s) 138, 245, 360
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 624
BshFI GGCC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 351, 596
BsmAI GTCTC 3 cut(s) 15, 36, 97
BsmBI CGTCTC 2 cut(s) 15, 36
BsnI GGCC 1 cut(s) 344
BspANI GGCC 1 cut(s) 344
BspCNI CTCAG 3 cut(s) 139, 244, 359
BspFNI CGCG 1 cut(s) 624
BspLI GGNNCC 1 cut(s) 343
BspMAI CTGCAG 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 113
Bst2UI CCWGG 3 cut(s) 108, 169, 363
Bst4CI ACNGT 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 65, 504
BstDEI CTNAG 4 cut(s) 147, 231, 346, 390
BstF5I GGATG 2 cut(s) 211, 435
BstFNI CGCG 1 cut(s) 624
BstMAI GTCTC 3 cut(s) 15, 36, 97
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 3 cut(s) 108, 169, 363
BstSCI CCNGG 4 cut(s) 106, 167, 350, 361
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 624
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 211, 435
Cac8I GCNNGC 2 cut(s) 65, 504
Cfr13I GGNCC 3 cut(s) 110, 342, 377
CseI GACGC 1 cut(s) 63
CsiI ACCWGGT 1 cut(s) 106
DdeI CTNAG 4 cut(s) 147, 231, 346, 390
Eco47I GGWCC 2 cut(s) 110, 377
Eco57I CTGAAG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 3 cut(s) 106, 167, 361
Esp3I CGTCTC 2 cut(s) 15, 36
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 2 cut(s) 218, 442
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 2 cut(s) 51, 197
GluI GCNGC 1 cut(s) 399
HaeIII GGCC 1 cut(s) 344
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 63
HinfI GANTC 3 cut(s) 193, 317, 553
HpaII CCGG 1 cut(s) 351
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 1 cut(s) 480
Hpy188I TCNGA 2 cut(s) 148, 558
Hpy188III TCNNGA 2 cut(s) 96, 197
Hpy8I GTNNAC 1 cut(s) 480
Hpy99I CGWCG 2 cut(s) 79, 624
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4IV ACGT 2 cut(s) 420, 619
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 4 cut(s) 147, 231, 346, 390
HpySE526I ACGT 2 cut(s) 420, 619
LmnI GCTCC 1 cut(s) 253
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 1 cut(s) 44
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 2 cut(s) 51, 197
MaeII ACGT 2 cut(s) 420, 619
MaeIII GTNAC 3 cut(s) 304, 310, 357
MboII GAAGA 6 cut(s) 18, 135, 340, 343, 505, 584
MluCI AATT 6 cut(s) 121, 139, 163, 383, 439, 535
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 8 cut(s) 72, 180, 193, 196, 355, 368, 517, 617
MseI TTAA 2 cut(s) 449, 489
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 4 cut(s) 108, 169, 352, 363
MvaI CCWGG 3 cut(s) 108, 169, 363
MvnI CGCG 1 cut(s) 624
MwoI GCNNNNNNNGC 1 cut(s) 404
NciI CCSGG 1 cut(s) 352
NlaIV GGNNCC 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 193, 553
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 106, 167, 361
PspGI CCWGG 3 cut(s) 106, 167, 361
PspN4I GGNNCC 1 cut(s) 343
PspPI GGNCC 3 cut(s) 110, 342, 377
PstI CTGCAG 1 cut(s) 415
SaqAI TTAA 2 cut(s) 449, 489
SatI GCNGC 1 cut(s) 399
Sau96I GGNCC 3 cut(s) 110, 342, 377
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 4 cut(s) 108, 169, 352, 363
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 110, 377
Sse9I AATT 6 cut(s) 121, 139, 163, 383, 439, 535
SspMI CTAG 2 cut(s) 51, 197
StyD4I CCNGG 4 cut(s) 106, 167, 350, 361
TaaI ACNGT 1 cut(s) 310
TaiI ACGT 2 cut(s) 423, 622
TaqI TCGA 1 cut(s) 77
TasI AATT 6 cut(s) 121, 139, 163, 383, 439, 535
TfiI GAWTC 2 cut(s) 193, 553
Tru1I TTAA 2 cut(s) 449, 489
Tru9I TTAA 2 cut(s) 449, 489
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 4 cut(s) 29, 191, 302, 383
TspGWI ACGGA 2 cut(s) 329, 442
VpaK11BI GGWCC 2 cut(s) 110, 377
XapI RAATTY 3 cut(s) 121, 163, 439
XbaI TCTAGA 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XspI CTAG 2 cut(s) 51, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.