Rh7BG269800

ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014241
Physical Location & Seq
Reverse (-)
24757727 .. 24759468
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG269800.1

Sequence Viewer

Length: 669 bp
ATGTTCTCGTCTCTCTCTCGGCTAGTCCCTCGGGTGACCAGATGCCATTCCCACCTCACTGCTTTAAGGTCCTTCTCCTTCTCTAGGATCCCACCCCCACCAGGTTCTGCAGATAGTTTTCAGCAGGGTGTTAATGCTTCTGAGAATGTTGCAACCGGAACGGGCTTGGATCATGTCACGGGATTTCCTGGAAGGAATTCCAGGTCTATGGACTTTGTTAGGGGAGTTATAGACCAAGATGGAAGGGCAAACCGAGCGGATCCTCAGTTTCAGTTCCCTATCAGACATATGGAGCAGAATGCTGATGTAGTCCACATAAAGTTGATGCGTAATAATACTTTTGTTACCGTCACAGATTCAAAGGGGAACAAGAAACTTGGGGCTTCAGCTGGATCTGTACCAGAAATGAAAGGAGGAGCAAAATTGTCTCGCTATGCTGCCGAAGCAACTGCAGAACATGTTGGACGGATGTCCAGAAATTTTGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGGTTTACTTATTTCAAGAAGAAGAAGCAAGCTATCTTGAGCTGGAAAGACGGCTTTACTAATTCCAGAGTGGGTCAAAATCCGGTTATATACATTGAAGATACCACCCGAAAGCCCCATAATGGCTGCCGACTCCGGAAGAAGCGTCGTGTCTAG

Protein Analysis

222

Amino Acids

24.69

Weight (kDa)

10.97

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 103 - 221 1.1e-14 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014241)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31817
malus_domestica MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica Prupe.8G075800_v2.0.a1
pyrus_communis pycom10g01900 pycom10g01930
rosa_chinensis RchiOBHm_Chr7g0213441
rosa_laevigata RLG00000002804
rosa_multiflora Rmu_sc0013012.1_g000009
rosa_roxburghii Rroxscaffold_3G00245880
rosa_rugosa Rorug07G0142300 Rorug07G0142500
rosa_samantha Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana Rw7G023790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 648
AciI CCGC 1 cut(s) 257
AclWI GGATC 6 cut(s) 82, 95, 177, 254, 267, 400
AcsI RAATTY 2 cut(s) 196, 478
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 3 cut(s) 84, 101, 635
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 4 cut(s) 360, 490, 529, 611
AjnI CCWGG 3 cut(s) 100, 187, 200
AluBI AGCT 3 cut(s) 389, 545, 555
AluI AGCT 3 cut(s) 389, 545, 555
Alw26I GTCTC 2 cut(s) 15, 432
AlwI GGATC 6 cut(s) 82, 95, 177, 254, 267, 400
AlwNI CAGNNNCTG 1 cut(s) 107
Ama87I CYCGRG 1 cut(s) 30
Aor13HI TCCGGA 1 cut(s) 648
ApeKI GCWGC 2 cut(s) 437, 639
ApoI RAATTY 2 cut(s) 196, 478
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 46, 520
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 69
BamHI GGATCC 2 cut(s) 87, 259
BbvI GCAGC 2 cut(s) 424, 626
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 580
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 3 cut(s) 102, 189, 202
BcoDI GTCTC 2 cut(s) 15, 432
BfaI CTAG 3 cut(s) 23, 84, 667
BfmI CTRYAG 2 cut(s) 108, 450
BisI GCNGC 2 cut(s) 438, 640
BlsI GCNGC 2 cut(s) 439, 641
Bme1390I CCNGG 3 cut(s) 102, 189, 202
Bme18I GGWCC 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 30
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 2 cut(s) 89, 261
BmrFI CCNGG 3 cut(s) 102, 189, 202
BmsI GCATC 2 cut(s) 32, 315
BoxI GACNNNNGTC 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 571
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 3 cut(s) 155, 595, 648
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 101, 635
BseAI TCCGGA 1 cut(s) 648
BseBI CCWGG 3 cut(s) 102, 189, 202
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 84, 101, 635
BseMII CTCAG 2 cut(s) 132, 278
BseRI GAGGAG 1 cut(s) 429
BseXI GCAGC 2 cut(s) 424, 626
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 3 cut(s) 156, 596, 649
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 3 cut(s) 84, 101, 635
BsmAI GTCTC 2 cut(s) 15, 432
BsmBI CGTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 304
BsoBI CYCGRG 1 cut(s) 30
Bsp13I TCCGGA 1 cut(s) 648
Bsp143I GATC 4 cut(s) 87, 169, 259, 392
BspACI CCGC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 133, 277
BspEI TCCGGA 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 89, 261
BspMAI CTGCAG 2 cut(s) 112, 454
BspPI GGATC 6 cut(s) 82, 95, 177, 254, 267, 400
BsrBI CCGCTC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 4 cut(s) 87, 169, 259, 392
Bst2UI CCWGG 3 cut(s) 102, 189, 202
Bst4CI ACNGT 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 2 cut(s) 141, 264
BstEII GGTNACC 1 cut(s) 34
BstENI CCTNNNNNAGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 474
BstKTI GATC 4 cut(s) 90, 172, 262, 395
BstMAI GTCTC 2 cut(s) 15, 432
BstMBI GATC 4 cut(s) 87, 169, 259, 392
BstMWI GCNNNNNNNGC 2 cut(s) 254, 443
BstNI CCWGG 3 cut(s) 102, 189, 202
BstNSI RCATGY 1 cut(s) 461
BstPAI GACNNNNGTC 1 cut(s) 469
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 3 cut(s) 100, 187, 200
BstSFI CTRYAG 2 cut(s) 108, 450
BstV1I GCAGC 2 cut(s) 424, 626
BstX2I RGATCY 3 cut(s) 87, 259, 392
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 3 cut(s) 87, 259, 392
BtsCI GGATG 1 cut(s) 474
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 69
CseI GACGC 1 cut(s) 647
CsiI ACCWGGT 1 cut(s) 100
Csp6I GTAC 1 cut(s) 398
CviAII CATG 2 cut(s) 173, 458
CviJI RGCY 9 cut(s) 22, 165, 383, 389, 545, 555, 567, 628, 639
CviKI_1 RGCY 9 cut(s) 22, 165, 383, 389, 545, 555, 567, 628, 639
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 2 cut(s) 141, 264
DpnI GATC 4 cut(s) 89, 171, 261, 394
DpnII GATC 4 cut(s) 87, 169, 259, 392
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 82
EcoO109I RGGNCCY 1 cut(s) 69
EcoO65I GGTNACC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 100, 187, 200
Esp3I CGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 176, 461
FaqI GGGAC 1 cut(s) 11
FatI CATG 2 cut(s) 172, 457
FauNDI CATATG 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 438, 640
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 2 cut(s) 438, 640
FspBI CTAG 3 cut(s) 23, 84, 667
GluI GCNGC 2 cut(s) 438, 640
HapII CCGG 3 cut(s) 156, 596, 649
HgaI GACGC 1 cut(s) 647
Hin1II CATG 2 cut(s) 176, 461
HinfI GANTC 2 cut(s) 356, 645
HpaII CCGG 3 cut(s) 156, 596, 649
HphI GGTGA 2 cut(s) 46, 520
Hpy166II GTNNAC 2 cut(s) 313, 519
Hpy188I TCNGA 2 cut(s) 142, 284
Hpy188III TCNNGA 5 cut(s) 474, 529, 550, 579, 649
Hpy8I GTNNAC 2 cut(s) 313, 519
Hpy99I CGWCG 1 cut(s) 663
HpyAV CCTTC 4 cut(s) 82, 88, 186, 237
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 3 cut(s) 110, 152, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 443
HpyF3I CTNAG 2 cut(s) 141, 264
Hsp92II CATG 2 cut(s) 176, 461
Kpn2I TCCGGA 1 cut(s) 648
Kzo9I GATC 4 cut(s) 87, 169, 259, 392
LmnI GCTCC 2 cut(s) 292, 416
Lsp1109I GCAGC 2 cut(s) 424, 626
LweI GCATC 2 cut(s) 32, 315
MabI ACCWGGT 1 cut(s) 100
MaeI CTAG 3 cut(s) 23, 84, 667
MaeIII GTNAC 4 cut(s) 34, 175, 343, 349
MalI GATC 4 cut(s) 89, 171, 261, 394
MbiI CCGCTC 1 cut(s) 257
MboI GATC 4 cut(s) 87, 169, 259, 392
MboII GAAGA 4 cut(s) 544, 547, 623, 664
MflI RGATCY 3 cut(s) 87, 259, 392
MluCI AATT 4 cut(s) 196, 422, 478, 574
MlyI GAGTC 1 cut(s) 639
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 5 cut(s) 39, 65, 273, 407, 498
MroI TCCGGA 1 cut(s) 648
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 2 cut(s) 65, 132
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 3 cut(s) 156, 596, 649
MspR9I CCNGG 3 cut(s) 102, 189, 202
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 3 cut(s) 102, 189, 202
MwoI GCNNNNNNNGC 2 cut(s) 254, 443
NdeI CATATG 1 cut(s) 288
NdeII GATC 4 cut(s) 87, 169, 259, 392
NlaIII CATG 2 cut(s) 176, 461
NlaIV GGNNCC 2 cut(s) 89, 261
NmuCI GTSAC 3 cut(s) 34, 175, 349
NspI RCATGY 1 cut(s) 461
PciI ACATGT 1 cut(s) 457
PctI GAATGC 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 2 cut(s) 439, 641
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
PpuMI RGGWCCY 1 cut(s) 69
PscI ACATGT 1 cut(s) 457
PshAI GACNNNNGTC 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 69
Psp6I CCWGG 3 cut(s) 100, 187, 200
PspEI GGTNACC 1 cut(s) 34
PspGI CCWGG 3 cut(s) 100, 187, 200
PspN4I GGNNCC 2 cut(s) 89, 261
PspPI GGNCC 1 cut(s) 69
PspPPI RGGWCCY 1 cut(s) 69
PstI CTGCAG 2 cut(s) 112, 454
PstNI CAGNNNCTG 1 cut(s) 107
PsuI RGATCY 3 cut(s) 87, 259, 392
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SaqAI TTAA 2 cut(s) 65, 132
SatI GCNGC 2 cut(s) 438, 640
Sau3AI GATC 4 cut(s) 87, 169, 259, 392
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 639
ScrFI CCNGG 3 cut(s) 102, 189, 202
SetI ASST 7 cut(s) 57, 71, 106, 206, 391, 547, 557
SexAI ACCWGGT 1 cut(s) 100
SfaNI GCATC 2 cut(s) 32, 315
SfcI CTRYAG 2 cut(s) 108, 450
SinI GGWCC 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 550
SmoI CTYRAG 1 cut(s) 550
Sse9I AATT 4 cut(s) 196, 422, 478, 574
SsiI CCGC 1 cut(s) 257
SspMI CTAG 3 cut(s) 23, 84, 667
StyD4I CCNGG 3 cut(s) 100, 187, 200
TaaI ACNGT 1 cut(s) 349
TasI AATT 4 cut(s) 196, 422, 478, 574
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 65, 132
Tru9I TTAA 2 cut(s) 65, 132
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 3 cut(s) 34, 175, 349
TseI GCWGC 2 cut(s) 437, 639
Tsp45I GTSAC 3 cut(s) 34, 175, 349
TspDTI ATGAA 1 cut(s) 422
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 69
XagI CCTNNNNNAGG 1 cut(s) 82
XapI RAATTY 2 cut(s) 196, 478
XceI RCATGY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 196
XspI CTAG 3 cut(s) 23, 84, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.