Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Forward (+)

40077027 .. 40079393

Gene Structure 2367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGTACACCTATATTCACAAAGAGAAAGGGAGAAGGGGGCTAAAAACAAGGTTCATAGTTAAGAGCAGCAAGAGTGAAGTCGCAGCAGCCTCCCTCCTCTCCCTCCTCATTCTCCGAGCTTCAGTCGATAGAAATAGTACCATTCAGGCGGAGGCAGGCGTGGTAAACAAGTGGAAGCGAGTGATGTTCTCGTCTCTCTCTCGCCTAGTCCCTCGGGTGACCAGATGCCATGCCCACCTCACTGCTTTAAGGTCCTTCTCCTTCTCTACGATCCCACCCCCACCCCCATCCCCACCAGGTTCCGGAGAGAGTTTTCAGCAGGGTGTTAATGCTTCTGAGAATGTTGCAACCGGAATGGGCTTGGATCATGTCACGGGATTTCCTGGAAGGAATTCCAGGTCTATGGACTTTGTTAGGGGGATTATAGACCAAGAGGGAAGGGCAAACAGAGCGGATCCTCACTTTCAGTTCCCTATCAGACATATGGAGCAGAATGCTGATGTAGTCCACATAAAGTTGATGCGTAATAATACTTTTGTTACCGTCACAGATTCAAAGGGGAACAAGAAACTTGGGGCTTCAGCTGGATCTGTACCAGAAATGAAAGGAGGAGCAAAATTGTCTCGCTATGCTGCCGAAGCAACTGCAGAACATGTTGGACGGATGTCCAGAAATTTTGGTTTGAAATCAGTTGTGATGAGGGTGAAAGGGTTTACTTATTTCAAGAAGAAGAAGCAAGCTATCTTGAGCTGGAAAGACGGCTTTACTAATTCCAGAGTGGGTCAAAATCCGGTTATATACATTGAAGATACCACCCGAAAGCCCCATAATGGCTGCCGACTCCGGAAGAAGCGTCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

288

Amino Acids

31.93

Weight (kDa)

10.92

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	168 - 286	1.9e-14	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	452
AccIII	TCCGGA	2 cut(s)	302, 843
AciI	CCGC	2 cut(s)	149, 452
AclWI	GGATC	5 cut(s)	265, 372, 449, 462, 595
AcsI	RAATTY	2 cut(s)	391, 673
AcuI	CTGAAG	2 cut(s)	105, 564
AfaI	GTAC	3 cut(s)	5, 139, 594
AfiI	CCNNNNNNNGG	2 cut(s)	302, 830
AflIII	ACRYGT	1 cut(s)	652
AgsI	TTSAA	4 cut(s)	555, 685, 724, 806
AjnI	CCWGG	3 cut(s)	295, 382, 395
AluBI	AGCT	4 cut(s)	119, 584, 740, 750
AluI	AGCT	4 cut(s)	119, 584, 740, 750
Alw26I	GTCTC	2 cut(s)	198, 627
AlwI	GGATC	5 cut(s)	265, 372, 449, 462, 595
Ama87I	CYCGRG	1 cut(s)	213
Aor13HI	TCCGGA	2 cut(s)	302, 843
ApeKI	GCWGC	5 cut(s)	66, 83, 86, 632, 834
ApoI	RAATTY	2 cut(s)	391, 673
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	229, 715
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	1 cut(s)	252
BamHI	GGATCC	1 cut(s)	454
BbvI	GCAGC	5 cut(s)	78, 95, 98, 619, 821
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	775
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	3 cut(s)	297, 384, 397
BcoDI	GTCTC	2 cut(s)	198, 627
BfaI	CTAG	2 cut(s)	206, 862
BfmI	CTRYAG	1 cut(s)	645
BisI	GCNGC	5 cut(s)	67, 84, 87, 633, 835
BlsI	GCNGC	5 cut(s)	68, 85, 88, 634, 836
Bme1390I	CCNGG	3 cut(s)	297, 384, 397
Bme18I	GGWCC	1 cut(s)	252
BmeT110I	CYCGRG	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	301, 456
BmrFI	CCNGG	3 cut(s)	297, 384, 397
BmsI	GCATC	2 cut(s)	215, 510
BoxI	GACNNNNGTC	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	766
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	4 cut(s)	302, 350, 790, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 830
BseAI	TCCGGA	2 cut(s)	302, 843
BseBI	CCWGG	3 cut(s)	297, 384, 397
BseDI	CCNNGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	287, 669
BseLI	CCNNNNNNNGG	2 cut(s)	302, 830
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	3 cut(s)	86, 95, 624
BseXI	GCAGC	5 cut(s)	78, 95, 98, 619, 821
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	303, 351, 791, 844
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	2 cut(s)	302, 830
BsmAI	GTCTC	2 cut(s)	198, 627
BsmBI	CGTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	499
BsoBI	CYCGRG	1 cut(s)	213
Bsp13I	TCCGGA	2 cut(s)	302, 843
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	270, 364, 454, 587
BspACI	CCGC	2 cut(s)	149, 452
BspCNI	CTCAG	1 cut(s)	328
BspEI	TCCGGA	2 cut(s)	302, 843
BspLI	GGNNCC	2 cut(s)	301, 456
BspMAI	CTGCAG	1 cut(s)	649
BspPI	GGATC	5 cut(s)	265, 372, 449, 462, 595
BsrBI	CCGCTC	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	4 cut(s)	270, 364, 454, 587
Bst2UI	CCWGG	3 cut(s)	297, 384, 397
Bst4CI	ACNGT	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	157, 738
BstDEI	CTNAG	1 cut(s)	336
BstEII	GGTNACC	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	287, 669
BstKTI	GATC	4 cut(s)	273, 367, 457, 590
BstMAI	GTCTC	2 cut(s)	198, 627
BstMBI	GATC	4 cut(s)	270, 364, 454, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 638
BstNI	CCWGG	3 cut(s)	297, 384, 397
BstNSI	RCATGY	1 cut(s)	656
BstPAI	GACNNNNGTC	1 cut(s)	664
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	295, 382, 395
BstSFI	CTRYAG	1 cut(s)	645
BstV1I	GCAGC	5 cut(s)	78, 95, 98, 619, 821
BstX2I	RGATCY	2 cut(s)	454, 587
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	2 cut(s)	454, 587
BtsCI	GGATG	2 cut(s)	287, 669
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	157, 738
Cfr13I	GGNCC	1 cut(s)	252
CseI	GACGC	1 cut(s)	842
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	4, 138, 593
CviAII	CATG	3 cut(s)	230, 368, 653
CviQI	GTAC	3 cut(s)	4, 138, 593
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	4 cut(s)	272, 366, 456, 589
DpnII	GATC	4 cut(s)	270, 364, 454, 587
EciI	GGCGGA	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	252
Eco57I	CTGAAG	2 cut(s)	105, 564
Eco88I	CYCGRG	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	252
EcoO65I	GGTNACC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	3 cut(s)	295, 382, 395
Esp3I	CGTCTC	1 cut(s)	198
FaeI	CATG	3 cut(s)	233, 371, 656
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	3 cut(s)	229, 367, 652
FauNDI	CATATG	1 cut(s)	483
Fnu4HI	GCNGC	5 cut(s)	67, 84, 87, 633, 835
FokI	GGATG	2 cut(s)	274, 676
Fsp4HI	GCNGC	5 cut(s)	67, 84, 87, 633, 835
FspBI	CTAG	2 cut(s)	206, 862
GluI	GCNGC	5 cut(s)	67, 84, 87, 633, 835
HapII	CCGG	4 cut(s)	303, 351, 791, 844
HgaI	GACGC	1 cut(s)	842
Hin1II	CATG	3 cut(s)	233, 371, 656
HinfI	GANTC	2 cut(s)	551, 840
HpaII	CCGG	4 cut(s)	303, 351, 791, 844
HphI	GGTGA	2 cut(s)	229, 715
Hpy166II	GTNNAC	4 cut(s)	6, 166, 508, 714
Hpy188I	TCNGA	3 cut(s)	116, 337, 479
Hpy188III	TCNNGA	6 cut(s)	303, 669, 724, 745, 774, 844
Hpy8I	GTNNAC	4 cut(s)	6, 166, 508, 714
Hpy99I	CGWCG	1 cut(s)	858
HpyAV	CCTTC	5 cut(s)	27, 265, 271, 381, 432
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	2 cut(s)	347, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 638
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	233, 371, 656
Kpn2I	TCCGGA	2 cut(s)	302, 843
Kzo9I	GATC	4 cut(s)	270, 364, 454, 587
LmnI	GCTCC	2 cut(s)	487, 611
Lsp1109I	GCAGC	5 cut(s)	78, 95, 98, 619, 821
LweI	GCATC	2 cut(s)	215, 510
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	206, 862
MaeIII	GTNAC	4 cut(s)	217, 370, 538, 544
MalI	GATC	4 cut(s)	272, 366, 456, 589
MbiI	CCGCTC	1 cut(s)	452
MboI	GATC	4 cut(s)	270, 364, 454, 587
MboII	GAAGA	4 cut(s)	739, 742, 818, 859
MflI	RGATCY	2 cut(s)	454, 587
MluCI	AATT	4 cut(s)	391, 617, 673, 769
MlyI	GAGTC	1 cut(s)	834
MmeI	TCCRAC	1 cut(s)	637
MroI	TCCGGA	2 cut(s)	302, 843
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	3 cut(s)	60, 248, 327
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	4 cut(s)	303, 351, 791, 844
MspR9I	CCNGG	3 cut(s)	297, 384, 397
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	3 cut(s)	297, 384, 397
MwoI	GCNNNNNNNGC	2 cut(s)	449, 638
NdeI	CATATG	1 cut(s)	483
NdeII	GATC	4 cut(s)	270, 364, 454, 587
NlaIII	CATG	3 cut(s)	233, 371, 656
NlaIV	GGNNCC	2 cut(s)	301, 456
NmuCI	GTSAC	3 cut(s)	217, 370, 544
NspI	RCATGY	1 cut(s)	656
PciI	ACATGT	1 cut(s)	652
PctI	GAATGC	1 cut(s)	499
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	551
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	5 cut(s)	68, 85, 88, 634, 836
PleI	GAGTC	1 cut(s)	834
PpsI	GAGTC	1 cut(s)	834
PpuMI	RGGWCCY	1 cut(s)	252
PscI	ACATGT	1 cut(s)	652
PshAI	GACNNNNGTC	1 cut(s)	664
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	3 cut(s)	295, 382, 395
PspEI	GGTNACC	1 cut(s)	217
PspGI	CCWGG	3 cut(s)	295, 382, 395
PspN4I	GGNNCC	2 cut(s)	301, 456
PspPI	GGNCC	1 cut(s)	252
PspPPI	RGGWCCY	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	454, 587
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	5, 139, 594
RsaNI	GTAC	3 cut(s)	4, 138, 593
SaqAI	TTAA	3 cut(s)	60, 248, 327
SatI	GCNGC	5 cut(s)	67, 84, 87, 633, 835
Sau3AI	GATC	4 cut(s)	270, 364, 454, 587
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	834
ScrFI	CCNGG	3 cut(s)	297, 384, 397
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	215, 510
SfcI	CTRYAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	745
SmoI	CTYRAG	1 cut(s)	745
Sse9I	AATT	4 cut(s)	391, 617, 673, 769
SsiI	CCGC	2 cut(s)	149, 452
SspMI	CTAG	2 cut(s)	206, 862
StyD4I	CCNGG	3 cut(s)	295, 382, 395
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	126
TasI	AATT	4 cut(s)	391, 617, 673, 769
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	3 cut(s)	60, 248, 327
Tru9I	TTAA	3 cut(s)	60, 248, 327
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	3 cut(s)	217, 370, 544
TseI	GCWGC	5 cut(s)	66, 83, 86, 632, 834
Tsp45I	GTSAC	3 cut(s)	217, 370, 544
TspDTI	ATGAA	2 cut(s)	43, 617
TspGWI	ACGGA	1 cut(s)	676
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	252
XapI	RAATTY	2 cut(s)	391, 673
XceI	RCATGY	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	2 cut(s)	206, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.