Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014241

Physical Location & Seq

Genomic Coordinates Reverse (-)

28624033 .. 28624494

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G023790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGACTTTGTTAGGGGAGTTATAGACCAAGATGGAAGGGCAAACCGAGCGGATCCTCAGTTTCAGTTCCCTATTAGACATATGGAGCAGAATGCTGATGTAGTCCACATAAAGTTGATGCGTAATAATACTTTTGTTACCGTCACAGATTCAAAGGGGAACAAGAAACTTGGGGCTTCGGCTGGATCTGTACCAGAAATGAAAGGAGGAGCAAAATTGTCTCGCTATGCTGCCGAAGCAACTGCAGAACATGTTGGACGGATGTCCAGAAATTTTGGGTTGAAATCAGTTGTGATGAGGGTGAAAGGGTTTACTTATTTCAAGAAGAAGAAGCAAGCTATCTTGAGCTGGAAAGACGGCTTTACTAATTCCAGAGTGGGTCAAAATCCGGTTATATACATTGAAGATACCACCCGAAAGCCCCATAATGGCTGCCGACTCCGGAAGAAGCGTCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000313 GO:0000314 GO:0000462 GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005761 GO:0005763 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030154 GO:0030490 GO:0031974 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:0098798 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

153

Amino Acids

17.33

Weight (kDa)

10.63

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	34 - 152	4.3e-15	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31817
malus_domestica	MD05G1028600.v1.1 MD10G1029200.v1.1
prunus_persica	Prupe.8G075800_v2.0.a1
pyrus_communis	pycom10g01900 pycom10g01930
rosa_chinensis	RchiOBHm_Chr7g0213441
rosa_laevigata	RLG00000002804
rosa_multiflora	Rmu_sc0013012.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245880
rosa_rugosa	Rorug07G0142300 Rorug07G0142500
rosa_samantha	Rh7AG274300 Rh7BG269800 Rh7CG293500 Rh7DG281800
rosa_wichuraiana	Rw7G023790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	441
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	3 cut(s)	47, 60, 193
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	4 cut(s)	153, 283, 322, 404
AluBI	AGCT	2 cut(s)	338, 348
AluI	AGCT	2 cut(s)	338, 348
Alw26I	GTCTC	1 cut(s)	225
AlwI	GGATC	3 cut(s)	47, 60, 193
Aor13HI	TCCGGA	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	230, 432
ApoI	RAATTY	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	313
BamHI	GGATCC	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	217, 419
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	1 cut(s)	460
BfmI	CTRYAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	231, 433
BlsI	GCNGC	2 cut(s)	232, 434
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	108
BoxI	GACNNNNGTC	1 cut(s)	262
BpuEI	CTTGAG	1 cut(s)	364
BsaWI	WCCGGW	2 cut(s)	388, 441
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
BseAI	TCCGGA	1 cut(s)	441
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	217, 419
BsiSI	CCGG	2 cut(s)	389, 442
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	97
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	2 cut(s)	52, 185
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	70
BspEI	TCCGGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	247
BspPI	GGATC	3 cut(s)	47, 60, 193
BsrBI	CCGCTC	1 cut(s)	50
BssMI	GATC	2 cut(s)	52, 185
Bst4CI	ACNGT	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	2 cut(s)	55, 188
BstMAI	GTCTC	1 cut(s)	225
BstMBI	GATC	2 cut(s)	52, 185
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 236
BstNSI	RCATGY	1 cut(s)	254
BstPAI	GACNNNNGTC	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	217, 419
BstX2I	RGATCY	2 cut(s)	52, 185
BstYI	RGATCY	2 cut(s)	52, 185
BtsCI	GGATG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	336
CseI	GACGC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	7 cut(s)	176, 182, 338, 348, 360, 421, 432
CviKI_1	RGCY	7 cut(s)	176, 182, 338, 348, 360, 421, 432
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	54, 187
DpnII	GATC	2 cut(s)	52, 185
FaeI	CATG	1 cut(s)	254
FaiI	YATR	9 cut(s)	23, 81, 83, 110, 228, 252, 395, 397, 426
FatI	CATG	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	231, 433
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	2 cut(s)	231, 433
FspBI	CTAG	1 cut(s)	460
GluI	GCNGC	2 cut(s)	231, 433
HapII	CCGG	2 cut(s)	389, 442
HgaI	GACGC	1 cut(s)	440
Hin1II	CATG	1 cut(s)	254
HinfI	GANTC	2 cut(s)	149, 438
HpaII	CCGG	2 cut(s)	389, 442
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	2 cut(s)	106, 312
Hpy188III	TCNNGA	5 cut(s)	267, 322, 343, 372, 442
Hpy8I	GTNNAC	2 cut(s)	106, 312
Hpy99I	CGWCG	1 cut(s)	456
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 236
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	254
Kpn2I	TCCGGA	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	52, 185
LmnI	GCTCC	2 cut(s)	85, 209
LpnPI	CCDG	7 cut(s)	168, 207, 280, 334, 385, 402, 455
Lsp1109I	GCAGC	2 cut(s)	217, 419
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	136, 142
MalI	GATC	2 cut(s)	54, 187
MbiI	CCGCTC	1 cut(s)	50
MboI	GATC	2 cut(s)	52, 185
MboII	GAAGA	4 cut(s)	337, 340, 416, 457
MflI	RGATCY	2 cut(s)	52, 185
MluCI	AATT	3 cut(s)	215, 271, 367
MlyI	GAGTC	1 cut(s)	432
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	66, 200, 291
MroI	TCCGGA	1 cut(s)	441
MspI	CCGG	2 cut(s)	389, 442
Mva1269I	GAATGC	1 cut(s)	97
MwoI	GCNNNNNNNGC	2 cut(s)	47, 236
NdeI	CATATG	1 cut(s)	81
NdeII	GATC	2 cut(s)	52, 185
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	254
PciI	ACATGT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	232, 434
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PscI	ACATGT	1 cut(s)	250
PshAI	GACNNNNGTC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	247
PsuI	RGATCY	2 cut(s)	52, 185
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SatI	GCNGC	2 cut(s)	231, 433
Sau3AI	GATC	2 cut(s)	52, 185
SchI	GAGTC	1 cut(s)	432
SetI	ASST	2 cut(s)	340, 350
SfaNI	GCATC	1 cut(s)	108
SfcI	CTRYAG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	3 cut(s)	215, 271, 367
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	460
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	3 cut(s)	215, 271, 367
TfiI	GAWTC	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	2 cut(s)	230, 432
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	274
XapI	RAATTY	1 cut(s)	271
XceI	RCATGY	1 cut(s)	254
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.