Prupe.3G204700_v2.0.a1

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0014360
Physical Location & Seq
Forward (+)
21265515 .. 21267070
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G204700.1

Sequence Viewer

Length: 819 bp
ATGGACTCAGATTCTGTACTGCAGATGAGCAAGAGGAGGAGGAGGAGCAGCCAAAGAGAAGATCAACCAGTACTTGGCATGGAGAATTTACCATATGAAATTGTCGCCGACATAATTTCAAGGCTGCCCTTTTCATCTCTTGTGCAATTCAGGAATGCAAATAGGGGCTCATGGCATCGATTTCGAGTCTATCGTCCACAATCAGAAGTTCAAGTTCTCACTCTGGGAAGCTCCAATTGGAGAAGTATAGGCAAAACATCTCACTACCTTCATCACTGGCCTGCACAGGTCTTGGTCAATGGAAGGCTTCACTGGGTTACTTGGAGAAGAAGATACCACCCGGGACGAAAGCTCATCTCTTTTGACTTGGGAGATGAGCAATTCAGGGAGGTCCCAAAACCTGAGGCTGATGGCTTAAATAGGTGGGATTATCATCTGCTGGTTGTAAGAGGCTGCCTTGCTGCAGTTTTCTATTGCAGCTTTGGGAAATTGGAGATGTGGGTTATGAAGGAGTATGGTGTGAAGGAAGCTTGGGTCAAAGAGCTGAGCATAGCAAGCCATGTGCCAAAGGCATTGAAACAAGATGTCGATAGATCATGGAAGATTTCAAAGATTGCTATCAGAGGAAGATATGTGAGGGTTTTGTGTGTTTTGGGGAGTGGCCAGATCTTGTTGGAGTACAAAAGCAGAGCTCTAGTTCTCTATGACCCAAATGGTGGAAATTTTCAAGATCTTGTGTTTCAGGGGATGCCAAAATGGTTTCAAACTGTTGTTCATCTGGGCAGACTTAACCAAATTCATACCCTTGTTAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0008150 GO:0008284 GO:0009506 GO:0030054 GO:0042127 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0055044 GO:0065007
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

273

Amino Acids

31.8

Weight (kDa)

10.0

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 74, 716
AcoI YGGCCR 1 cut(s) 661
AcsI RAATTY 3 cut(s) 85, 721, 795
AfaI GTAC 3 cut(s) 18, 72, 680
AfiI CCNNNNNNNGG 2 cut(s) 74, 716
AgsI TTSAA 6 cut(s) 120, 212, 577, 609, 728, 764
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AluBI AGCT 6 cut(s) 231, 352, 480, 530, 544, 692
AluI AGCT 6 cut(s) 231, 352, 480, 530, 544, 692
Alw21I GWGCWC 1 cut(s) 694
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 2 cut(s) 278, 661
ApeKI GCWGC 5 cut(s) 48, 124, 453, 461, 477
ApoI RAATTY 3 cut(s) 85, 721, 795
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 2 cut(s) 341, 342
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 391
AxyI CCTNAGG 1 cut(s) 402
BalI TGGCCA 1 cut(s) 663
BanII GRGCYC 2 cut(s) 170, 694
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 5 cut(s) 60, 111, 440, 448, 489
BccI CCATC 1 cut(s) 404
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BcnI CCSGG 2 cut(s) 341, 342
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 2 cut(s) 20, 462
BglII AGATCT 2 cut(s) 666, 730
BisI GCNGC 5 cut(s) 49, 125, 454, 462, 478
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 5 cut(s) 50, 126, 455, 463, 479
BmcAI AGTACT 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 341, 342
Bme18I GGWCC 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 2 cut(s) 341, 342
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 2 cut(s) 184, 738
BmuI ACTGGG 1 cut(s) 322
Bpu1102I GCTNAGC 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 341, 342
Bsa29I ATCGAT 1 cut(s) 178
BsaBI GATNNNNATC 2 cut(s) 432, 617
BsaJI CCNNGG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 716
Bse1I ACTGG 3 cut(s) 68, 281, 317
Bse21I CCTNAGG 1 cut(s) 402
Bse8I GATNNNNATC 2 cut(s) 432, 617
BseCI ATCGAT 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 753
BseJI GATNNNNATC 2 cut(s) 432, 617
BseLI CCNNNNNNNGG 2 cut(s) 74, 716
BseMII CTCAG 3 cut(s) 21, 393, 536
BseNI ACTGG 3 cut(s) 68, 281, 317
BseRI GAGGAG 4 cut(s) 49, 52, 55, 58
BseXI GCAGC 5 cut(s) 60, 111, 440, 448, 489
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 2 cut(s) 280, 663
BshVI ATCGAT 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 694
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 2 cut(s) 357, 377
BslI CCNNNNNNNGG 2 cut(s) 74, 716
BsmFI GGGAC 2 cut(s) 357, 377
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 2 cut(s) 280, 663
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 170, 694
Bsp143I GATC 4 cut(s) 61, 593, 666, 730
Bsp1720I GCTNAGC 1 cut(s) 545
BspANI GGCC 2 cut(s) 280, 663
BspCNI CTCAG 3 cut(s) 20, 394, 537
BspDI ATCGAT 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 393
BspMAI CTGCAG 2 cut(s) 24, 466
BsrI ACTGG 3 cut(s) 68, 281, 317
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 4 cut(s) 61, 593, 666, 730
Bst4CI ACNGT 1 cut(s) 769
BstC8I GCNNGC 2 cut(s) 282, 556
BstDEI CTNAG 3 cut(s) 7, 402, 545
BstF5I GGATG 1 cut(s) 753
BstKTI GATC 4 cut(s) 64, 596, 669, 733
BstMBI GATC 4 cut(s) 61, 593, 666, 730
BstMWI GCNNNNNNNGC 1 cut(s) 555
BstSCI CCNGG 2 cut(s) 339, 340
BstSFI CTRYAG 2 cut(s) 20, 462
BstV1I GCAGC 5 cut(s) 60, 111, 440, 448, 489
BstX2I RGATCY 2 cut(s) 666, 730
BstYI RGATCY 2 cut(s) 666, 730
Bsu15I ATCGAT 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 2 cut(s) 280, 663
BsuTUI ATCGAT 1 cut(s) 178
BtsCI GGATG 1 cut(s) 753
BtsIMutI CAGTG 2 cut(s) 274, 310
Cac8I GCNNGC 2 cut(s) 282, 556
CaiI CAGNNNCTG 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 391
Cfr9I CCCGGG 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 178
Csp6I GTAC 3 cut(s) 17, 71, 679
CviAII CATG 4 cut(s) 79, 171, 560, 597
CviQI GTAC 3 cut(s) 17, 71, 679
DdeI CTNAG 3 cut(s) 7, 402, 545
DpnI GATC 4 cut(s) 63, 595, 668, 732
DpnII GATC 4 cut(s) 61, 593, 666, 730
EaeI YGGCCR 1 cut(s) 661
Ecl136II GAGCTC 1 cut(s) 692
Eco24I GRGCYC 2 cut(s) 170, 694
Eco47I GGWCC 1 cut(s) 391
Eco53kI GAGCTC 1 cut(s) 692
Eco81I CCTNAGG 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 692
EcoO109I RGGNCCY 1 cut(s) 391
EcoT38I GRGCYC 2 cut(s) 170, 694
FaeI CATG 4 cut(s) 82, 174, 563, 600
FaqI GGGAC 2 cut(s) 357, 377
FatI CATG 4 cut(s) 78, 170, 559, 596
FauNDI CATATG 1 cut(s) 94
Fnu4HI GCNGC 5 cut(s) 49, 125, 454, 462, 478
FokI GGATG 1 cut(s) 760
FriOI GRGCYC 2 cut(s) 170, 694
Fsp4HI GCNGC 5 cut(s) 49, 125, 454, 462, 478
FspBI CTAG 1 cut(s) 695
GluI GCNGC 5 cut(s) 49, 125, 454, 462, 478
HaeIII GGCC 2 cut(s) 280, 663
HapII CCGG 1 cut(s) 341
Hin1II CATG 4 cut(s) 82, 174, 563, 600
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 3 cut(s) 5, 11, 186
HpaII CCGG 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 3 cut(s) 10, 205, 623
Hpy188III TCNNGA 2 cut(s) 151, 728
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 278, 297, 502, 517
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4V TGCA 6 cut(s) 22, 145, 158, 284, 464, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 555
HpyF3I CTNAG 3 cut(s) 7, 402, 545
Hsp92II CATG 4 cut(s) 82, 174, 563, 600
Kzo9I GATC 4 cut(s) 61, 593, 666, 730
LmnI GCTCC 2 cut(s) 45, 236
Lsp1109I GCAGC 5 cut(s) 60, 111, 440, 448, 489
LweI GCATC 2 cut(s) 184, 738
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 1 cut(s) 316
MalI GATC 4 cut(s) 63, 595, 668, 732
MboI GATC 4 cut(s) 61, 593, 666, 730
MboII GAAGA 5 cut(s) 71, 339, 342, 613, 639
MfeI CAATTG 1 cut(s) 235
MflI RGATCY 2 cut(s) 666, 730
MhlI GDGCHC 2 cut(s) 170, 694
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 9 cut(s) 85, 99, 114, 146, 235, 380, 488, 721, 795
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 654
MnlI CCTC 9 cut(s) 27, 30, 33, 36, 382, 397, 443, 617, 630
Mox20I TGGCCA 1 cut(s) 663
MscI TGGCCA 1 cut(s) 663
MseI TTAA 3 cut(s) 416, 789, 810
Msp20I TGGCCA 1 cut(s) 663
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 2 cut(s) 341, 342
MunI CAATTG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 555
NciI CCSGG 2 cut(s) 341, 342
NdeI CATATG 1 cut(s) 94
NdeII GATC 4 cut(s) 61, 593, 666, 730
NlaIII CATG 4 cut(s) 82, 174, 563, 600
NlaIV GGNNCC 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 11
PflMI CCANNNNNTGG 2 cut(s) 74, 716
PkrI GCNGC 5 cut(s) 50, 126, 455, 463, 479
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PpuMI RGGWCCY 1 cut(s) 391
Psp124BI GAGCTC 1 cut(s) 694
Psp5II RGGWCCY 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 391
PspPPI RGGWCCY 1 cut(s) 391
PstI CTGCAG 2 cut(s) 24, 466
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 2 cut(s) 666, 730
RsaI GTAC 3 cut(s) 18, 72, 680
RsaNI GTAC 3 cut(s) 17, 71, 679
SacI GAGCTC 1 cut(s) 694
SaqAI TTAA 3 cut(s) 416, 789, 810
SatI GCNGC 5 cut(s) 49, 125, 454, 462, 478
Sau3AI GATC 4 cut(s) 61, 593, 666, 730
Sau96I GGNCC 1 cut(s) 391
ScaI AGTACT 1 cut(s) 72
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 341, 342
SduI GDGCHC 2 cut(s) 170, 694
SfaNI GCATC 2 cut(s) 184, 738
SfcI CTRYAG 2 cut(s) 20, 462
SinI GGWCC 1 cut(s) 391
SmaI CCCGGG 1 cut(s) 342
Sse9I AATT 9 cut(s) 85, 99, 114, 146, 235, 380, 488, 721, 795
SspMI CTAG 1 cut(s) 695
SstI GAGCTC 1 cut(s) 694
StyD4I CCNGG 2 cut(s) 339, 340
TaaI ACNGT 1 cut(s) 769
TaqI TCGA 3 cut(s) 178, 184, 588
TasI AATT 9 cut(s) 85, 99, 114, 146, 235, 380, 488, 721, 795
TatI WGTACW 3 cut(s) 16, 70, 678
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 416, 789, 810
Tru9I TTAA 3 cut(s) 416, 789, 810
TscAI CASTG 2 cut(s) 281, 317
TseI GCWGC 5 cut(s) 48, 124, 453, 461, 477
TspDTI ATGAA 6 cut(s) 111, 123, 260, 521, 764, 788
TspMI CCCGGG 1 cut(s) 340
TspRI CASTG 2 cut(s) 281, 317
Van91I CCANNNNNTGG 2 cut(s) 74, 716
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 3 cut(s) 85, 721, 795
XmaI CCCGGG 1 cut(s) 340
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.