Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014360

Physical Location & Seq

Genomic Coordinates Reverse (-)

14016078 .. 14023913

Gene Structure 7836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00092490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAAATACAAGGTATTCATACACCGCCATCCCGGAGCACTTCTAAGATTACAAATGAAGCAAGAAAAGGAAGATATGTTCGGGTTTTGGACGTTTTGGAAAGTGGGCAAATCTTGTTGGAGTTCGCTAGTATCGCCCGAGAAACGCAGATTCTAAATGGAGGAGAAACCAAGGGGGAAAAGCAATCAGTAACTTGGCAGCAAAGTCTCCCATCTGAAATCATGGTCAACTCCCTAGTGAATATTGCAGACAAAGCAAGAGGAGTAATTATTCGGGTCCTGAACGTTTTGGAGAGTGGCCATATATTGTTGGAGTACCAAGGTAGGGCTCTAGTTATTTATGACCCAACTAATGGAAATTTTACAGAGCTTGAATTTGAAGGGATGCCAAGATGGTTTCAAACTGTTGTTCATCTGGGCAGACTCGATCAGGTTGATACCGTTTTTAACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0008284 GO:0009506 GO:0030054 GO:0042127 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0055044 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

151

Amino Acids

17.02

Weight (kDa)

6.84

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07870
malus_domestica	MD09G1119500.v1.1 MD11G1173200.v1.1
prunus_persica	Prupe.3G204700_v2.0.a1 Prupe.6G145000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213431
rosa_multiflora	Rmu_co8465031.1_g000001 Rmu_sc0013012.1_g000002 Rmu_ssc0000262.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092490 Rroxscaffold_3G00245910
rosa_rugosa	Rorug07G0142300
rosa_samantha	Rh7AG274200 Rh7BG269500 Rh7CG293300 Rh7DG281700
rosa_wichuraiana	Rw7G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	353
AciI	CCGC	1 cut(s)	26
AclI	AACGTT	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	2 cut(s)	358, 374
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	325, 353
AgsI	TTSAA	3 cut(s)	374, 380, 401
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	358, 374
AspS9I	GGNCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	138
AvaII	GGWCC	1 cut(s)	277
BalI	TGGCCA	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	41
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	3 cut(s)	37, 220, 387
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	3 cut(s)	129, 236, 332
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	277
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	375
BpuMI	CCSGG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	171, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 353
BseDI	CCNNGG	2 cut(s)	171, 319
BseGI	GGATG	2 cut(s)	29, 390
BseLI	CCNNNNNNNGG	2 cut(s)	325, 353
BseRI	GAGGAG	2 cut(s)	177, 276
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	41
BsiHKCI	CYCGRG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	325, 353
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	41, 331
Bsp143I	GATC	1 cut(s)	427
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	278
BssECI	CCNNGG	2 cut(s)	171, 319
BssMI	GATC	1 cut(s)	427
BssT1I	CCWWGG	2 cut(s)	171, 319
Bst4CI	ACNGT	2 cut(s)	406, 442
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	29, 390
BstKTI	GATC	1 cut(s)	430
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	427
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 254
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	29, 390
Cfr13I	GGNCC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	3 cut(s)	300, 329, 370
CviKI_1	RGCY	3 cut(s)	300, 329, 370
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	1 cut(s)	429
DpnII	GATC	1 cut(s)	427
EaeI	YGGCCR	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	171, 319
Eco24I	GRGCYC	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	138
EcoO109I	RGGNCCY	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	171, 319
EcoT38I	GRGCYC	1 cut(s)	331
ErhI	CCWWGG	2 cut(s)	171, 319
FaeI	CATG	1 cut(s)	226
FaiI	YATR	6 cut(s)	21, 78, 224, 303, 305, 342
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	2 cut(s)	16, 397
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	3 cut(s)	129, 236, 332
GluI	GCNGC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	151, 423
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	2 cut(s)	406, 442
HpyCH4IV	ACGT	2 cut(s)	93, 285
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 254
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	93, 285
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	427
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	5 cut(s)	47, 293, 401, 416, 436
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	3 cut(s)	129, 236, 332
MaeII	ACGT	2 cut(s)	93, 285
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	429
MboI	GATC	1 cut(s)	427
MboII	GAAGA	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	41, 331
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	3 cut(s)	267, 358, 374
MluNI	TGGCCA	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	2 cut(s)	99, 291
MnlI	CCTC	2 cut(s)	155, 254
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	300
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	134, 254
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	427
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	201
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PpuMI	RGGWCCY	1 cut(s)	277
Psp1406I	AACGTT	1 cut(s)	285
Psp5II	RGGWCCY	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	277
PspPPI	RGGWCCY	1 cut(s)	277
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	1 cut(s)	427
Sau96I	GGNCC	1 cut(s)	277
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	2 cut(s)	41, 331
SetI	ASST	7 cut(s)	16, 96, 288, 325, 372, 435, 455
SfaNI	GCATC	1 cut(s)	375
SinI	GGWCC	1 cut(s)	277
Sse9I	AATT	3 cut(s)	267, 358, 374
SsiI	CCGC	1 cut(s)	26
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	3 cut(s)	129, 236, 332
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	171, 319
TaaI	ACNGT	2 cut(s)	406, 442
TaiI	ACGT	2 cut(s)	96, 288
TaqI	TCGA	1 cut(s)	426
TasI	AATT	3 cut(s)	267, 358, 374
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	1 cut(s)	199
TspDTI	ATGAA	4 cut(s)	8, 17, 72, 401
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	358, 374
XspI	CTAG	3 cut(s)	129, 236, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.