Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014360

Physical Location & Seq

Genomic Coordinates Forward (+)

38993659 .. 38997127

Gene Structure 3469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00245910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGACTCAGATTCTAGGAGGAGGAGAAACCAAGGAGAAGAGCAATCAGTAACTTGGCTGGAAAGTCTCTCATCTGAAATCGTCGTCGACATACTTTCCAGGCTTCCTCTTTCCTCTGCGGTGCAATTCGGGTATGTATGCCGCTCATGGCGTGTACTAGCACGTAGTCACCTTGATACTTTGCATAGGCAGCATAGCTCTAACATAGTTGCAAGCCTAGGTCTCATCCTGCACTGTGATCATCCCATTAAAAATGAGCTTTACTTTGTCGATTACCCTTCTAATTACCATGATGGCAAGAAGATAGCAGAAAAGAAAATTAACAAACCATTCTGTGCTTTAATGCCTGAGTTTGATGTGGTAGGCTTATTTGATGGTTTGCTCTGCTTAGCTGATGCAGTGAACAATGTTGCACTATACATATATAATCCATTCACTAGGGATTATATACAGCTGCCTAGGACCACCCAGTATCCTAATCGACATAGACATGTGGTATTTGGATTTGGGTATAGTCCCTTGACTGAAGTATACAAGGTAGTGAAGATAACCTATTACAATGGTCATGGAGAATACTATGGTTATAGAGATTGCCGGACTTACTACAGTAAATTTCCCCGACTATCCGACGTTCAGATTTTCACAACAGGAAGACCTATCTGGAGAAGTATAGGGAGTGCATCTCACTACTTGGATTCGTCACCAGCACAGACATTGGTCAATGGAAGACTTCATTGGGCCACTTGGGACCTCACGCAGACTGCGATCTGGTGGCCAGCTCCCTGGAAATCTGGAGACCAACTTGGAACTGGTCTCACCATTGTTCTTGTCCGGTCCAAGGACCTTGAGAAGTGGAAGCAAGCCGAACTGAACTGCAGGAACTGCTGCAGAACTGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAACTGGACTGCAGAAATGCTGCAGAACTGGACTGCAGGAAATGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCAGGAACTGCTGCAGAAATGGACTGCGGGAAGAACGATGAAGGAGCCATGGAACTTGTTGCTGCTTCTTGTGAGTTGCGAGAGGGAGAAAGGAAAGTGAAGCAGAAAATGGGTTTACTTTATCCTTTCTTCTTTTGGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0008284 GO:0009506 GO:0030054 GO:0042127 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0055044 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

413

Amino Acids

47.39

Weight (kDa)

8.47

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 57	5e-06	F-box domain
FBA_3	PF08268	87 - 250	8.7e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014360)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07870
malus_domestica	MD09G1119500.v1.1 MD11G1173200.v1.1
prunus_persica	Prupe.3G204700_v2.0.a1 Prupe.6G145000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0213431
rosa_multiflora	Rmu_co8465031.1_g000001 Rmu_sc0013012.1_g000002 Rmu_ssc0000262.1_g000011
rosa_roxburghii	Rroxscaffold_2G00092490 Rroxscaffold_3G00245910
rosa_rugosa	Rorug07G0142300
rosa_samantha	Rh7AG274200 Rh7BG269500 Rh7CG293300 Rh7DG281700
rosa_wichuraiana	Rw7G023780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	144
AccI	GTMKAC	2 cut(s)	87, 531
AciI	CCGC	3 cut(s)	119, 142, 1125
AcoI	YGGCCR	1 cut(s)	773
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	838
AflIII	ACRYGT	1 cut(s)	490
AjnI	CCWGG	2 cut(s)	98, 782
AjuI	GAANNNNNNNTTGG	2 cut(s)	718, 750
AluBI	AGCT	5 cut(s)	198, 259, 392, 454, 779
AluI	AGCT	5 cut(s)	198, 259, 392, 454, 779
Alw26I	GTCTC	4 cut(s)	71, 227, 789, 818
AlwNI	CAGNNNCTG	8 cut(s)	882, 907, 932, 957, 982, 1007, 1081, 1106
AoxI	GGCC	2 cut(s)	738, 773
ApoI	RAATTY	1 cut(s)	611
AspA2I	CCTAGG	2 cut(s)	217, 458
AspS9I	GGNCC	5 cut(s)	462, 738, 748, 834, 841
AsuHPI	GGTGA	3 cut(s)	161, 693, 808
AvaII	GGWCC	4 cut(s)	462, 748, 834, 841
AvrII	CCTAGG	2 cut(s)	217, 458
BalI	TGGCCA	1 cut(s)	775
BbsI	GAAGAC	2 cut(s)	658, 733
BccI	CCATC	2 cut(s)	287, 368
BciT130I	CCWGG	2 cut(s)	100, 784
BciVI	GTATCC	1 cut(s)	483
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	4 cut(s)	71, 227, 789, 818
BfaI	CTAG	5 cut(s)	15, 158, 218, 438, 459
BfuI	GTATCC	1 cut(s)	483
BlnI	CCTAGG	2 cut(s)	217, 458
BlpI	GCTNAGC	1 cut(s)	388
Bme1390I	CCNGG	2 cut(s)	100, 784
Bme18I	GGWCC	4 cut(s)	462, 748, 834, 841
BmgT120I	GGNCC	5 cut(s)	462, 738, 748, 834, 841
BmiI	GGNNCC	2 cut(s)	749, 1144
BmrFI	CCNGG	2 cut(s)	100, 784
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	385, 689
BmuI	ACTGGG	1 cut(s)	463
BoxI	GACNNNNGTC	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	658, 733
BplI	GAGNNNNNCTC	2 cut(s)	667, 699
BpmI	CTGGAG	2 cut(s)	682, 813
Bpu1102I	GCTNAGC	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	866
BsaAI	YACGTR	1 cut(s)	164
BsaI	GGTCTC	3 cut(s)	227, 789, 818
BsaJI	CCNNGG	6 cut(s)	31, 217, 458, 782, 837, 1146
BsaWI	WCCGGW	1 cut(s)	831
Bsc4I	CCNNNNNNNGG	1 cut(s)	838
Bse1I	ACTGG	5 cut(s)	469, 814, 898, 1023, 1047
BseBI	CCWGG	2 cut(s)	100, 784
BseDI	CCNNGG	6 cut(s)	31, 217, 458, 782, 837, 1146
BseGI	GGATG	2 cut(s)	225, 241
BseLI	CCNNNNNNNGG	1 cut(s)	838
BseMII	CTCAG	2 cut(s)	21, 339
BseNI	ACTGG	5 cut(s)	469, 814, 898, 1023, 1047
BseRI	GAGGAG	2 cut(s)	34, 37
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	2 cut(s)	740, 775
BsiSI	CCGG	2 cut(s)	595, 832
BslFI	GGGAC	2 cut(s)	501, 761
BslI	CCNNNNNNNGG	1 cut(s)	838
BsmAI	GTCTC	4 cut(s)	71, 227, 789, 818
BsmFI	GGGAC	2 cut(s)	501, 761
BsnI	GGCC	2 cut(s)	740, 775
Bso31I	GGTCTC	3 cut(s)	227, 789, 818
Bsp143I	GATC	2 cut(s)	238, 765
Bsp1720I	GCTNAGC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	1146
BspACI	CCGC	3 cut(s)	119, 142, 1125
BspANI	GGCC	2 cut(s)	740, 775
BspCNI	CTCAG	2 cut(s)	20, 340
BspLI	GGNNCC	2 cut(s)	749, 1144
BspQI	GCTCTTC	1 cut(s)	33
BspTNI	GGTCTC	3 cut(s)	227, 789, 818
BsrBI	CCGCTC	1 cut(s)	144
BsrI	ACTGG	5 cut(s)	469, 814, 898, 1023, 1047
BssECI	CCNNGG	6 cut(s)	31, 217, 458, 782, 837, 1146
BssMI	GATC	2 cut(s)	238, 765
BssNAI	GTATAC	1 cut(s)	532
BssT1I	CCWWGG	5 cut(s)	31, 217, 458, 837, 1146
Bst1107I	GTATAC	1 cut(s)	532
Bst2UI	CCWGG	2 cut(s)	100, 784
Bst4CI	ACNGT	2 cut(s)	236, 608
Bst6I	CTCTTC	1 cut(s)	33
BstAPI	GCANNNNNTGC	9 cut(s)	882, 907, 932, 957, 982, 1007, 1056, 1081, 1106
BstBAI	YACGTR	1 cut(s)	164
BstC8I	GCNNGC	3 cut(s)	214, 777, 861
BstDEI	CTNAG	3 cut(s)	7, 348, 388
BstDSI	CCRYGG	1 cut(s)	1146
BstF5I	GGATG	2 cut(s)	225, 241
BstKTI	GATC	2 cut(s)	241, 768
BstMAI	GTCTC	4 cut(s)	71, 227, 789, 818
BstMBI	GATC	2 cut(s)	238, 765
BstNI	CCWGG	2 cut(s)	100, 784
BstNSI	RCATGY	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	716
BstSCI	CCNGG	2 cut(s)	98, 782
BstV2I	GAAGAC	2 cut(s)	658, 733
BstXI	CCANNNNNNTGG	1 cut(s)	783
BstZ17I	GTATAC	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	740, 775
BtgI	CCRYGG	1 cut(s)	1146
BtsCI	GGATG	2 cut(s)	225, 241
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	232, 405
Cac8I	GCNNGC	3 cut(s)	214, 777, 861
CaiI	CAGNNNCTG	8 cut(s)	882, 907, 932, 957, 982, 1007, 1081, 1106
Cfr13I	GGNCC	5 cut(s)	462, 738, 748, 834, 841
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	5 cut(s)	147, 290, 491, 566, 1147
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	3 cut(s)	7, 348, 388
DpnI	GATC	2 cut(s)	240, 767
DpnII	GATC	2 cut(s)	238, 765
EaeI	YGGCCR	1 cut(s)	773
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco130I	CCWWGG	5 cut(s)	31, 217, 458, 837, 1146
Eco31I	GGTCTC	3 cut(s)	227, 789, 818
Eco47I	GGWCC	4 cut(s)	462, 748, 834, 841
Eco57I	CTGAAG	1 cut(s)	546
EcoO109I	RGGNCCY	2 cut(s)	748, 841
EcoRII	CCWGG	2 cut(s)	98, 782
EcoT14I	CCWWGG	5 cut(s)	31, 217, 458, 837, 1146
ErhI	CCWWGG	5 cut(s)	31, 217, 458, 837, 1146
FaeI	CATG	5 cut(s)	150, 293, 494, 569, 1150
FaqI	GGGAC	2 cut(s)	501, 761
FatI	CATG	5 cut(s)	146, 289, 490, 565, 1146
FauI	CCCGC	1 cut(s)	1118
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	2 cut(s)	87, 531
FokI	GGATG	2 cut(s)	212, 228
FspBI	CTAG	5 cut(s)	15, 158, 218, 438, 459
GsuI	CTGGAG	2 cut(s)	682, 813
HaeIII	GGCC	2 cut(s)	740, 775
HapII	CCGG	2 cut(s)	595, 832
Hin1II	CATG	5 cut(s)	150, 293, 494, 569, 1150
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	3 cut(s)	5, 11, 695
HpaII	CCGG	2 cut(s)	595, 832
HphI	GGTGA	3 cut(s)	161, 693, 808
Hpy166II	GTNNAC	5 cut(s)	88, 155, 403, 532, 1214
Hpy188I	TCNGA	4 cut(s)	10, 76, 628, 636
Hpy188III	TCNNGA	2 cut(s)	661, 792
Hpy8I	GTNNAC	5 cut(s)	88, 155, 403, 532, 1214
Hpy99I	CGWCG	3 cut(s)	86, 89, 632
HpyAV	CCTTC	2 cut(s)	288, 1133
HpyCH4III	ACNGT	2 cut(s)	236, 608
HpyCH4IV	ACGT	2 cut(s)	163, 630
HpyF3I	CTNAG	3 cut(s)	7, 348, 388
HpySE526I	ACGT	2 cut(s)	163, 630
Hsp92II	CATG	5 cut(s)	150, 293, 494, 569, 1150
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	238, 765
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	784, 1142
LweI	GCATC	2 cut(s)	385, 689
MaeI	CTAG	5 cut(s)	15, 158, 218, 438, 459
MaeII	ACGT	2 cut(s)	163, 630
MaeIII	GTNAC	3 cut(s)	49, 167, 699
MalI	GATC	2 cut(s)	240, 767
MbiI	CCGCTC	1 cut(s)	144
MboI	GATC	2 cut(s)	238, 765
MboII	GAAGA	7 cut(s)	50, 313, 556, 663, 738, 1141, 1219
MlsI	TGGCCA	1 cut(s)	775
MluCI	AATT	4 cut(s)	125, 283, 318, 611
MluNI	TGGCCA	1 cut(s)	775
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	6 cut(s)	12, 15, 117, 124, 761, 1174
Mox20I	TGGCCA	1 cut(s)	775
MscI	TGGCCA	1 cut(s)	775
MseI	TTAA	3 cut(s)	249, 321, 341
MslI	CAYNNNNRTG	1 cut(s)	489
Msp20I	TGGCCA	1 cut(s)	775
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	2 cut(s)	595, 832
MspR9I	CCNGG	2 cut(s)	100, 784
MvaI	CCWGG	2 cut(s)	100, 784
NcoI	CCATGG	1 cut(s)	1146
NdeII	GATC	2 cut(s)	238, 765
NlaIII	CATG	5 cut(s)	150, 293, 494, 569, 1150
NlaIV	GGNNCC	2 cut(s)	749, 1144
NmuCI	GTSAC	2 cut(s)	167, 699
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	761
PfeI	GAWTC	2 cut(s)	11, 695
Ppu21I	YACGTR	1 cut(s)	164
PpuMI	RGGWCCY	2 cut(s)	748, 841
PscI	ACATGT	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	716
Psp5II	RGGWCCY	2 cut(s)	748, 841
Psp6I	CCWGG	2 cut(s)	98, 782
PspGI	CCWGG	2 cut(s)	98, 782
PspN4I	GGNNCC	2 cut(s)	749, 1144
PspPI	GGNCC	5 cut(s)	462, 738, 748, 834, 841
PspPPI	RGGWCCY	2 cut(s)	748, 841
PstNI	CAGNNNCTG	8 cut(s)	882, 907, 932, 957, 982, 1007, 1081, 1106
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	489
SalI	GTCGAC	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	249, 321, 341
Sau3AI	GATC	2 cut(s)	238, 765
Sau96I	GGNCC	5 cut(s)	462, 738, 748, 834, 841
ScrFI	CCNGG	2 cut(s)	100, 784
SfaNI	GCATC	2 cut(s)	385, 689
SinI	GGWCC	4 cut(s)	462, 748, 834, 841
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
Sse9I	AATT	4 cut(s)	125, 283, 318, 611
SsiI	CCGC	3 cut(s)	119, 142, 1125
SspMI	CTAG	5 cut(s)	15, 158, 218, 438, 459
StyD4I	CCNGG	2 cut(s)	98, 782
StyI	CCWWGG	5 cut(s)	31, 217, 458, 837, 1146
TaaI	ACNGT	2 cut(s)	236, 608
TaiI	ACGT	2 cut(s)	166, 633
TaqI	TCGA	3 cut(s)	87, 270, 481
TasI	AATT	4 cut(s)	125, 283, 318, 611
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	11, 695
Tru1I	TTAA	3 cut(s)	249, 321, 341
Tru9I	TTAA	3 cut(s)	249, 321, 341
TscAI	CASTG	2 cut(s)	239, 405
TseFI	GTSAC	2 cut(s)	167, 699
Tsp45I	GTSAC	2 cut(s)	167, 699
TspDTI	ATGAA	2 cut(s)	722, 1152
TspRI	CASTG	2 cut(s)	239, 405
VpaK11BI	GGWCC	4 cut(s)	462, 748, 834, 841
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XmaJI	CCTAGG	2 cut(s)	217, 458
XmiI	GTMKAC	2 cut(s)	87, 531
XspI	CTAG	5 cut(s)	15, 158, 218, 438, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.