AT3G09230
MYB Family

Myb-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
2833346 .. 2835390
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09230.1

Sequence Viewer

Length: 1182 bp
ATGGAGGCAGAGATCGTGAGACGATCGGAGGTAACGGGATTAAGAAGGGAGGTGGAAGAATCGTCAATTGGTAGAGGAGATTGCGATGGTGATGGCGGCGATGTGGGAGAAGATGCGGCAGGGTTCGTTGGGACGAGCGGGAGAGGAAGAAGAGATCGAGTTAAAGGGCCGTGGTCGAAGGAGGAGGATGATGTGTTGAGTGAGCTCGTTAAGAGGTTGGGAGCGAGGAATTGGAGTTTTATCGCTCGGAGTATTCCTGGTCGTTCAGGCAAGTCTTGTCGTCTTCGTTGGTGTAATCAGCTCAATCCAAATCTTATACGCAATTCATTTACTGAGGTAGAGGATCAGGCTATCATCGCAGCACATGCCATCCACGGAAACAAATGGGCTGTTATCGCGAAGCTCCTCCCCGGAAGAACAGATAATGCTATCAAGAACCACTGGAACTCTGCTTTAAGACGTCGATTCATAGACTTTGAAAAGGCCAAGAATATAGGAACTGGAAGCTTGGTCGTGGATGATTCTGGATTTGACAGAACGACAACAGTAGCCTCATCAGAAGAAACTTTATCTTCAGGCGGTGGTTGCCATGTAACTACTCCAATTGTATCTCCAGAAGGCAAAGAAGCTACCACCTCCATGGAAATGTCTGAAGAACAATGCGTAGAGAAAACAAACGGAGAAGGTATTTCTAGGCAAGATGATAAGGATCCTCCAACGCTTTTCCGCCCAGTGCCTCGGCTCAGTTCTTTTAATGCTTGCAATCACATGGAAGGATCACCCTCTCCACATATACAAGACCAAAATCAGCTCCAATCATCTAAACAAGACGCAGCAATGCTAAGATTGCTTGAAGGAGCTTACAGCGAACGGTTTGTGCCTCAAACATGTGGAGGTGGTTGTTGCAGCAACAATCCCGATGGCAGTTTTCAGCAAGAATCATTGTTGGGTCCAGAGTTTGTGGATTACTTAGACTCACCAACGTTTCCGAGTTCCGAACTAGCTGCTATAGCAACGGAAATAGGCAGCCTCGCTTGGCTGAGAAGCGGTTTAGAGAGTAGCAGCGTGAGGGTGATGGAAGACGCAGTTGGTCGGTTAAGGCCTCAAGGCTCCAGGGGTCATCGAGATCATTATCTTGTATCTGAACAGGGGACGAACATAACCAATGTCCTGTCCACATAA

Protein Analysis

393

Amino Acids

42.81

Weight (kDa)

5.37

Isoelectric Point (pI)

64.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 55 - 101 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 58 - 117 3.4e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 107 - 151 1.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 110 - 163 5.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011822)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 138
AccII CGCG 1 cut(s) 398
AciI CCGC 6 cut(s) 96, 116, 138, 579, 727, 1047
AclI AACGTT 1 cut(s) 983
AclWI GGATC 4 cut(s) 351, 704, 717, 784
AcuI CTGAAG 2 cut(s) 558, 672
AcyI GRCGYC 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 887
AgsI TTSAA 2 cut(s) 479, 854
AjnI CCWGG 2 cut(s) 256, 1112
AjuI GAANNNNNNNTTGG 4 cut(s) 51, 83, 1071, 1103
AluBI AGCT 8 cut(s) 205, 301, 403, 507, 629, 811, 860, 1004
AluI AGCT 8 cut(s) 205, 301, 403, 507, 629, 811, 860, 1004
Alw21I GWGCWC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 13
AlwI GGATC 4 cut(s) 351, 704, 717, 784
AoxI GGCC 3 cut(s) 167, 483, 1100
ApeKI GCWGC 6 cut(s) 359, 833, 906, 1004, 1026, 1062
AspS9I GGNCC 2 cut(s) 167, 950
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 4 cut(s) 101, 771, 969, 1084
AvaII GGWCC 1 cut(s) 950
BamHI GGATCC 1 cut(s) 709
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 275, 1086
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 6 cut(s) 371, 845, 918, 991, 1038, 1074
BccI CCATC 5 cut(s) 80, 86, 377, 914, 1069
BceAI ACGGC 1 cut(s) 154
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 2 cut(s) 258, 1114
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 2 cut(s) 693, 1001
BfmI CTRYAG 1 cut(s) 1008
BisI GCNGC 8 cut(s) 97, 117, 360, 834, 907, 1005, 1027, 1063
BlsI GCNGC 8 cut(s) 98, 118, 361, 835, 908, 1006, 1028, 1064
Bme1390I CCNGG 3 cut(s) 258, 411, 1114
Bme18I GGWCC 1 cut(s) 950
BmgT120I GGNCC 2 cut(s) 167, 950
BmiI GGNNCC 3 cut(s) 711, 951, 1111
BmrFI CCNGG 3 cut(s) 258, 411, 1114
BmrI ACTGGG 1 cut(s) 725
BmsI GCATC 1 cut(s) 103
BmuI ACTGGG 1 cut(s) 725
BpiI GAAGAC 2 cut(s) 275, 1086
BpmI CTGGAG 2 cut(s) 597, 1096
BpuEI CTTGAG 1 cut(s) 1089
BpuMI CCSGG 1 cut(s) 411
BsaBI GATNNNNATC 2 cut(s) 708, 1131
BsaHI GRCGYC 1 cut(s) 460
BsaJI CCNNGG 6 cut(s) 170, 373, 409, 639, 737, 1113
Bse1I ACTGG 3 cut(s) 446, 505, 731
Bse3DI GCAATG 1 cut(s) 843
Bse8I GATNNNNATC 2 cut(s) 708, 1131
BseBI CCWGG 2 cut(s) 258, 1114
BseDI CCNNGG 6 cut(s) 170, 373, 409, 639, 737, 1113
BseGI GGATG 3 cut(s) 193, 369, 523
BseJI GATNNNNATC 2 cut(s) 708, 1131
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 3 cut(s) 324, 757, 1031
BseNI ACTGG 3 cut(s) 446, 505, 731
BseRI GAGGAG 3 cut(s) 90, 197, 395
BseXI GCAGC 6 cut(s) 371, 845, 918, 991, 1038, 1074
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 26
BshFI GGCC 3 cut(s) 169, 485, 1102
BsiEI CGRYCG 1 cut(s) 26
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 1 cut(s) 411
BslFI GGGAC 2 cut(s) 145, 1165
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 145, 1165
BsnI GGCC 3 cut(s) 169, 485, 1102
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
Bsp19I CCATGG 1 cut(s) 639
Bsp68I TCGCGA 1 cut(s) 398
BspACI CCGC 6 cut(s) 96, 116, 138, 579, 727, 1047
BspANI GGCC 3 cut(s) 169, 485, 1102
BspCNI CTCAG 3 cut(s) 325, 756, 1032
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 711, 951, 1111
BspPI GGATC 4 cut(s) 351, 704, 717, 784
BsrBI CCGCTC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 3 cut(s) 446, 505, 731
BssECI CCNNGG 6 cut(s) 170, 373, 409, 639, 737, 1113
BssMI GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
BssNI GRCGYC 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 639
Bst2UI CCWGG 2 cut(s) 258, 1114
Bst4CI ACNGT 2 cut(s) 547, 873
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 460
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 760
BstDEI CTNAG 5 cut(s) 333, 743, 842, 970, 1040
BstDSI CCRYGG 3 cut(s) 170, 373, 639
BstF5I GGATG 3 cut(s) 193, 369, 523
BstFNI CGCG 1 cut(s) 398
BstKTI GATC 7 cut(s) 15, 26, 157, 346, 712, 779, 1129
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
BstMCI CGRYCG 1 cut(s) 26
BstMWI GCNNNNNNNGC 6 cut(s) 356, 365, 395, 585, 847, 1010
BstNI CCWGG 2 cut(s) 258, 1114
BstNSI RCATGY 2 cut(s) 368, 891
BstSCI CCNGG 3 cut(s) 256, 409, 1112
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 6 cut(s) 371, 845, 918, 991, 1038, 1074
BstV2I GAAGAC 2 cut(s) 275, 1086
BstX2I RGATCY 1 cut(s) 709
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 3 cut(s) 169, 485, 1102
BtgI CCRYGG 3 cut(s) 170, 373, 639
BtgZI GCGATG 3 cut(s) 99, 114, 340
BtsCI GGATG 3 cut(s) 193, 369, 523
BtsIMutI CAGTG 2 cut(s) 439, 738
BtuMI TCGCGA 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 167, 950
CseI GACGC 2 cut(s) 839, 1091
CviAII CATG 5 cut(s) 365, 590, 640, 769, 888
DdeI CTNAG 5 cut(s) 333, 743, 842, 970, 1040
DpnI GATC 7 cut(s) 14, 25, 156, 345, 711, 778, 1128
DpnII GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
EciI GGCGGA 1 cut(s) 716
Ecl136II GAGCTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 639
Eco147I AGGCCT 1 cut(s) 1102
Eco24I GRGCYC 1 cut(s) 207
Eco47I GGWCC 1 cut(s) 950
Eco53kI GAGCTC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 558, 672
EcoICRI GAGCTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 256, 1112
EcoT14I CCWWGG 1 cut(s) 639
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 639
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 5 cut(s) 368, 593, 643, 772, 891
FaqI GGGAC 2 cut(s) 145, 1165
FatI CATG 5 cut(s) 364, 589, 639, 768, 887
FauI CCCGC 1 cut(s) 131
Fnu4HI GCNGC 8 cut(s) 97, 117, 360, 834, 907, 1005, 1027, 1063
FokI GGATG 3 cut(s) 200, 356, 530
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 8 cut(s) 97, 117, 360, 834, 907, 1005, 1027, 1063
FspBI CTAG 2 cut(s) 693, 1001
GluI GCNGC 8 cut(s) 97, 117, 360, 834, 907, 1005, 1027, 1063
GsuI CTGGAG 2 cut(s) 597, 1096
HaeIII GGCC 3 cut(s) 169, 485, 1102
HapII CCGG 1 cut(s) 411
HgaI GACGC 2 cut(s) 839, 1091
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 5 cut(s) 368, 593, 643, 772, 891
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 5 cut(s) 59, 465, 521, 938, 974
HpaII CCGG 1 cut(s) 411
HphI GGTGA 4 cut(s) 101, 771, 969, 1084
Hpy166II GTNNAC 1 cut(s) 1176
Hpy188I TCNGA 7 cut(s) 28, 249, 559, 652, 990, 997, 1144
Hpy188III TCNNGA 8 cut(s) 16, 397, 433, 525, 614, 917, 953, 1124
Hpy8I GTNNAC 1 cut(s) 1176
Hpy99I CGWCG 1 cut(s) 465
HpyAV CCTTC 6 cut(s) 39, 172, 611, 677, 767, 848
HpyCH4III ACNGT 2 cut(s) 547, 873
HpyCH4IV ACGT 2 cut(s) 460, 983
HpyCH4V TGCA 2 cut(s) 762, 906
HpyF10VI GCNNNNNNNGC 6 cut(s) 356, 365, 395, 585, 847, 1010
HpyF3I CTNAG 5 cut(s) 333, 743, 842, 970, 1040
HpySE526I ACGT 2 cut(s) 460, 983
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 5 cut(s) 368, 593, 643, 772, 891
Kzo9I GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
LmnI GCTCC 5 cut(s) 221, 408, 816, 857, 1115
Lsp1109I GCAGC 6 cut(s) 371, 845, 918, 991, 1038, 1074
LweI GCATC 1 cut(s) 103
MaeI CTAG 2 cut(s) 693, 1001
MaeII ACGT 2 cut(s) 460, 983
MaeIII GTNAC 2 cut(s) 31, 592
MalI GATC 7 cut(s) 14, 25, 156, 345, 711, 778, 1128
MbiI CCGCTC 1 cut(s) 138
MboI GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
MfeI CAATTG 2 cut(s) 66, 603
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 4 cut(s) 66, 229, 322, 603
MlyI GAGTC 1 cut(s) 968
MmeI TCCRAC 1 cut(s) 740
MseI TTAA 6 cut(s) 41, 162, 210, 455, 753, 1097
MslI CAYNNNNRTG 2 cut(s) 638, 644
MspI CCGG 1 cut(s) 411
MspR9I CCNGG 3 cut(s) 258, 411, 1114
MunI CAATTG 2 cut(s) 66, 603
MvaI CCWGG 2 cut(s) 258, 1114
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 6 cut(s) 356, 365, 395, 585, 847, 1010
NciI CCSGG 1 cut(s) 411
NcoI CCATGG 1 cut(s) 639
NdeII GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
NlaIII CATG 5 cut(s) 368, 593, 643, 772, 891
NlaIV GGNNCC 3 cut(s) 711, 951, 1111
NmeAIII GCCGAG 1 cut(s) 718
NruI TCGCGA 1 cut(s) 398
NspI RCATGY 2 cut(s) 368, 891
PceI AGGCCT 1 cut(s) 1102
PciI ACATGT 1 cut(s) 887
PfeI GAWTC 4 cut(s) 59, 465, 521, 938
PkrI GCNGC 8 cut(s) 98, 118, 361, 835, 908, 1006, 1028, 1064
Ple19I CGATCG 1 cut(s) 26
PleI GAGTC 1 cut(s) 968
PpsI GAGTC 1 cut(s) 968
PscI ACATGT 1 cut(s) 887
Psp124BI GAGCTC 1 cut(s) 207
Psp1406I AACGTT 1 cut(s) 983
Psp6I CCWGG 2 cut(s) 256, 1112
PspGI CCWGG 2 cut(s) 256, 1112
PspN4I GGNNCC 3 cut(s) 711, 951, 1111
PspPI GGNCC 2 cut(s) 167, 950
PsuI RGATCY 1 cut(s) 709
PvuI CGATCG 1 cut(s) 26
RruI TCGCGA 1 cut(s) 398
RseI CAYNNNNRTG 2 cut(s) 638, 644
SacI GAGCTC 1 cut(s) 207
SaqAI TTAA 6 cut(s) 41, 162, 210, 455, 753, 1097
SatI GCNGC 8 cut(s) 97, 117, 360, 834, 907, 1005, 1027, 1063
Sau3AI GATC 7 cut(s) 12, 23, 154, 343, 709, 776, 1126
Sau96I GGNCC 2 cut(s) 167, 950
SchI GAGTC 1 cut(s) 968
ScrFI CCNGG 3 cut(s) 258, 411, 1114
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 1008
SinI GGWCC 1 cut(s) 950
SmiMI CAYNNNNRTG 2 cut(s) 638, 644
SmlI CTYRAG 1 cut(s) 1104
SmoI CTYRAG 1 cut(s) 1104
Sse9I AATT 4 cut(s) 66, 229, 322, 603
SseBI AGGCCT 1 cut(s) 1102
SsiI CCGC 6 cut(s) 96, 116, 138, 579, 727, 1047
SspMI CTAG 2 cut(s) 693, 1001
SstI GAGCTC 1 cut(s) 207
StuI AGGCCT 1 cut(s) 1102
StyD4I CCNGG 3 cut(s) 256, 409, 1112
StyI CCWWGG 1 cut(s) 639
TaaI ACNGT 2 cut(s) 547, 873
TaiI ACGT 2 cut(s) 463, 986
TaqI TCGA 4 cut(s) 157, 176, 463, 1123
TasI AATT 4 cut(s) 66, 229, 322, 603
TauI GCSGC 2 cut(s) 99, 119
TfiI GAWTC 4 cut(s) 59, 465, 521, 938
Tru1I TTAA 6 cut(s) 41, 162, 210, 455, 753, 1097
Tru9I TTAA 6 cut(s) 41, 162, 210, 455, 753, 1097
TscAI CASTG 2 cut(s) 446, 738
TseI GCWGC 6 cut(s) 359, 833, 906, 1004, 1026, 1062
TspDTI ATGAA 2 cut(s) 315, 457
TspGWI ACGGA 3 cut(s) 390, 693, 1031
TspRI CASTG 2 cut(s) 446, 738
VpaK11BI GGWCC 1 cut(s) 950
XceI RCATGY 2 cut(s) 368, 891
XspI CTAG 2 cut(s) 693, 1001
ZraI GACGTC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.