Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7985966.1

Orthogroup ID

OG0011822

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 394

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7985966.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atgataattgcagcccacacaatccatggaaacaaatgggctgcaattgcaaggcttttaccaggaagaacagataatgccataaaaaatcactggaactccaccctacgtcgccgggatccagacagaatgaaatcagaatcaggtaatatggttgaagatgttagcttggacaaaacaatagcatcttctgaagaaacactctcaaatggtgatgtcaattcatctaaatctacggaaggaaaagaagtcagttctctagagtatacagatgatcaacatgaagacaaggtgtcaacagatggtctgtatggtaatgaagccagagaaccttgtactctttttaggccagtggcacgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

120

Amino Acids

13.34

Weight (kDa)

5.53

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09230
fragaria_vesca	FvH4_6g12440
malus_domestica	MD04G1142200.v1.1 MD12G1156800.v1.1
prunus_persica	Prupe.6G267600_v2.0.a1
pyrus_communis	pycom04g12920 pycom12g14900
rosa_chinensis	RchiOBHm_Chr3g0464251
rosa_laevigata	RLG00000024713
rosa_multiflora	Rmu_co7985966.1_g000001 Rmu_sc0007811.1_g000007 Rmu_sc0024604.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415900
rosa_rugosa	Rorug03G0071100 Rorug03G0071100
rosa_samantha	Rh3BG132900 Rh3CG135100 Rh3DG134300
rosa_wichuraiana	Rw3G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AclWI	GGATC	2 cut(s)	113, 126
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	158
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
AlwI	GGATC	2 cut(s)	113, 126
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	11, 41
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	23, 28
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	63
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	116
BfaI	CTAG	1 cut(s)	260
BisI	GCNGC	2 cut(s)	12, 42
BlsI	GCNGC	2 cut(s)	13, 43
Bme1390I	CCNGG	2 cut(s)	63, 116
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	63, 116
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bse1I	ACTGG	2 cut(s)	98, 350
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	25
BseNI	ACTGG	2 cut(s)	98, 350
BseXI	GCAGC	2 cut(s)	23, 28
BshFI	GGCC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	115
BsnI	GGCC	1 cut(s)	349
Bsp143I	GATC	2 cut(s)	118, 274
Bsp19I	CCATGG	1 cut(s)	25
BspANI	GGCC	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	113, 126
BsrI	ACTGG	2 cut(s)	98, 350
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	2 cut(s)	118, 274
BssNAI	GTATAC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	25
Bst1107I	GTATAC	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	121, 277
BstMBI	GATC	2 cut(s)	118, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	61, 114
BstV1I	GCAGC	2 cut(s)	23, 28
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	91, 357
Csp6I	GTAC	1 cut(s)	336
CviAII	CATG	2 cut(s)	26, 281
CviJI	RGCY	6 cut(s)	14, 41, 55, 168, 323, 349
CviKI_1	RGCY	6 cut(s)	14, 41, 55, 168, 323, 349
CviQI	GTAC	1 cut(s)	336
DpnI	GATC	2 cut(s)	120, 276
DpnII	GATC	2 cut(s)	118, 274
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1105I	GACNNNNNGTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	2 cut(s)	29, 284
FaiI	YATR	6 cut(s)	27, 83, 152, 267, 282, 312
FatI	CATG	2 cut(s)	25, 280
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	12, 42
Fsp4HI	GCNGC	2 cut(s)	12, 42
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	2 cut(s)	12, 42
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	1 cut(s)	115
Hin1II	CATG	2 cut(s)	29, 284
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	267, 297
Hpy188I	TCNGA	2 cut(s)	139, 193
Hpy188III	TCNNGA	2 cut(s)	122, 260
Hpy8I	GTNNAC	2 cut(s)	267, 297
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	109, 358
HpyCH4V	TGCA	3 cut(s)	11, 44, 50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	109, 358
Hsp92II	CATG	2 cut(s)	29, 284
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	118, 274
LpnPI	CCDG	7 cut(s)	48, 75, 79, 128, 129, 135, 337
Lsp1109I	GCAGC	2 cut(s)	23, 28
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	2 cut(s)	109, 358
MalI	GATC	2 cut(s)	120, 276
MboI	GATC	2 cut(s)	118, 274
MboII	GAAGA	5 cut(s)	78, 170, 180, 206, 296
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	3 cut(s)	6, 45, 220
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	2 cut(s)	63, 116
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	2 cut(s)	118, 274
NlaIII	CATG	2 cut(s)	29, 284
NlaIV	GGNNCC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	2 cut(s)	13, 43
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	337
RsaNI	GTAC	1 cut(s)	336
SatI	GCNGC	2 cut(s)	12, 42
Sau3AI	GATC	2 cut(s)	118, 274
ScrFI	CCNGG	2 cut(s)	63, 116
SetI	ASST	5 cut(s)	112, 148, 170, 294, 334
SfaNI	GCATC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	6, 45, 220
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	61, 114
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	112
TasI	AATT	3 cut(s)	6, 45, 220
TatI	WGTACW	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	140
TscAI	CASTG	2 cut(s)	98, 357
TseI	GCWGC	2 cut(s)	11, 41
TspDTI	ATGAA	4 cut(s)	146, 213, 297, 333
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	98, 357
XbaI	TCTAGA	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.