Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011822

Physical Location & Seq

Genomic Coordinates Forward (+)

5663315 .. 5666357

Gene Structure 3043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCATCGTCTCCAATGGAATCTGGGGCATTGGTTTTATTGCAAGACCTACATCCATTTTCACCATACTTTAAGCAAGGGGCTTCACTAAGAGTAACCGGAAAGTTACAAGGGTATTCTGTTGAGACAGCTATCGCCACAGTAGTTGATGGAAATGACAGCTTAAAGATCGACACCAAACTCCTCAGAGAGCTTAACATTCGGGTTGGATCCATGTACCAGTTCATCGGCGAACTGCATATTGAACCCAATAATGAGGCAGTCTTGCAAGCACGCGTGGGTAGAAATGTTGATGGCATTGACCTCAAGCTCTATTATCAGTCTCTGCAATTGCTAAGACAATTTCAAGCCAATCATCTGAAGAACCCAACAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

125

Amino Acids

13.89

Weight (kDa)

6.83

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ten1_2	PF15490	6 - 118	2.2e-34	Telomere-capping, CST complex subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09230
fragaria_vesca	FvH4_6g12440
malus_domestica	MD04G1142200.v1.1 MD12G1156800.v1.1
prunus_persica	Prupe.6G267600_v2.0.a1
pyrus_communis	pycom04g12920 pycom12g14900
rosa_chinensis	RchiOBHm_Chr3g0464251
rosa_laevigata	RLG00000024713
rosa_multiflora	Rmu_co7985966.1_g000001 Rmu_sc0007811.1_g000007 Rmu_sc0024604.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415900
rosa_rugosa	Rorug03G0071100 Rorug03G0071100
rosa_samantha	Rh3BG132900 Rh3CG135100 Rh3DG134300
rosa_wichuraiana	Rw3G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	276
AclWI	GGATC	2 cut(s)	204, 217
AfaI	GTAC	1 cut(s)	218
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	245, 347
AluBI	AGCT	5 cut(s)	131, 162, 193, 310, 374
AluI	AGCT	5 cut(s)	131, 162, 193, 310, 374
Alw26I	GTCTC	3 cut(s)	15, 119, 327
AlwI	GGATC	2 cut(s)	204, 217
AlwNI	CAGNNNCTG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	209
BccI	CCATC	2 cut(s)	143, 287
BcoDI	GTCTC	3 cut(s)	15, 119, 327
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	290
BsaWI	WCCGGW	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	199
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	173
Bsh1236I	CGCG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	99
BsmAI	GTCTC	3 cut(s)	15, 119, 327
BsmBI	CGTCTC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	168, 209
BspCNI	CTCAG	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	2 cut(s)	204, 217
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	168, 209
Bst4CI	ACNGT	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	270, 274
BstDEI	CTNAG	3 cut(s)	89, 185, 335
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	2 cut(s)	171, 212
BstMAI	GTCTC	3 cut(s)	15, 119, 327
BstMBI	GATC	2 cut(s)	168, 209
BstUI	CGCG	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	52
Cac8I	GCNNGC	2 cut(s)	270, 274
CaiI	CAGNNNCTG	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	83, 131, 162, 193, 310, 350, 374
CviKI_1	RGCY	7 cut(s)	83, 131, 162, 193, 310, 350, 374
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	3 cut(s)	89, 185, 335
DpnI	GATC	2 cut(s)	170, 211
DpnII	GATC	2 cut(s)	168, 209
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	217
FaiI	YATR	3 cut(s)	67, 215, 240
FatI	CATG	1 cut(s)	213
FokI	GGATG	1 cut(s)	39
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	2 cut(s)	188, 360
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	43, 238, 268, 328
HpyF3I	CTNAG	3 cut(s)	89, 185, 335
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	168, 209
LpnPI	CCDG	3 cut(s)	9, 112, 233
LweI	GCATC	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	94, 105
MalI	GATC	2 cut(s)	170, 211
MboI	GATC	2 cut(s)	168, 209
MboII	GAAGA	1 cut(s)	373
MfeI	CAATTG	1 cut(s)	329
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	2 cut(s)	329, 341
MluI	ACGCGT	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	3 cut(s)	194, 250, 314
MseI	TTAA	4 cut(s)	72, 164, 195, 376
MspI	CCGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	276
NdeII	GATC	2 cut(s)	168, 209
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SaqAI	TTAA	4 cut(s)	72, 164, 195, 376
Sau3AI	GATC	2 cut(s)	168, 209
SetI	ASST	7 cut(s)	51, 133, 164, 195, 306, 312, 376
SfaNI	GCATC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	2 cut(s)	329, 341
TaaI	ACNGT	1 cut(s)	142
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	329, 341
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	72, 164, 195, 376
Tru9I	TTAA	4 cut(s)	72, 164, 195, 376
TspDTI	ATGAA	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.