Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011822

Physical Location & Seq

Genomic Coordinates Reverse (-)

15926313 .. 15926933

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAAGGAAGAGAAGTCAGTTCTTTTCAGCATATGGATGATCAAGATGAATACAATGGGTCATCGGAGGTTCAGTTTAGTCATGAAGCCACTGAACAACCTAATCTTTTCAGACCAGTGGCGCAGATCAGTGCTTTTAGTATATATAACCAATCAAATAGTCAGGAGCCTGAATCATCATTCCCAAGGCCGATTCCAGTGCAAGGACCTCTTCTTCGAGAATCAAAACTAGATGTTGGAATCAGTAAGTTTCTTGAAGGAGTTTATGGTGAGCTCTCAGTGCCTGATCAGTGTGCCCACGGTTGCTGCTGTGCACAGAATGGTATGAACTTTCAAAACTCGTTGTTGGGGCCAGAATTCATGGAATTCTCCGAGCCTCCCTCGTTTCCAAGTTTCGAATTGGCTGCAATTGCCACAGATATAAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAATAACAGTGTAAGAGGAATGAGTGATGCAGCTGGTAGAATAACAACTAATAAGTCTCAAGGAAAAATGGGCCGTTTTGAAGATAGTAGAACGAATCATCTTTTTCCTGTTGAAGAGAGAAACGATAGGCTAATGGGCATGAAGACCAATGTACTATCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

207

Amino Acids

22.84

Weight (kDa)

4.73

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09230
fragaria_vesca	FvH4_6g12440
malus_domestica	MD04G1142200.v1.1 MD12G1156800.v1.1
prunus_persica	Prupe.6G267600_v2.0.a1
pyrus_communis	pycom04g12920 pycom12g14900
rosa_chinensis	RchiOBHm_Chr3g0464251
rosa_laevigata	RLG00000024713
rosa_multiflora	Rmu_co7985966.1_g000001 Rmu_sc0007811.1_g000007 Rmu_sc0024604.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415900
rosa_rugosa	Rorug03G0071100 Rorug03G0071100
rosa_samantha	Rh3BG132900 Rh3CG135100 Rh3DG134300
rosa_wichuraiana	Rw3G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	356, 365
AfaI	GTAC	1 cut(s)	609
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	4 cut(s)	257, 335, 536, 569
AluBI	AGCT	2 cut(s)	274, 488
AluI	AGCT	2 cut(s)	274, 488
Alw21I	GWGCWC	2 cut(s)	276, 316
Alw26I	GTCTC	1 cut(s)	516
Alw44I	GTGCAC	1 cut(s)	312
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	3 cut(s)	188, 350, 526
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	3 cut(s)	306, 404, 485
ApoI	RAATTY	2 cut(s)	356, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	3 cut(s)	206, 350, 526
AsuHPI	GGTGA	1 cut(s)	281
AsuII	TTCGAA	1 cut(s)	396
AvaII	GGWCC	1 cut(s)	206
BaeGI	GKGCMC	2 cut(s)	298, 316
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	605
Bbv12I	GWGCWC	2 cut(s)	276, 316
BbvI	GCAGC	3 cut(s)	293, 391, 497
BceAI	ACGGC	1 cut(s)	513
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 386, 420
BclI	TGATCA	2 cut(s)	40, 286
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	1 cut(s)	230
BisI	GCNGC	3 cut(s)	307, 405, 486
BlsI	GCNGC	3 cut(s)	308, 406, 487
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	206, 350, 526
BmiI	GGNNCC	2 cut(s)	168, 351
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	1 cut(s)	605
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	185, 298
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	2 cut(s)	116, 197
BseDI	CCNNGG	2 cut(s)	185, 298
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	116, 197
BseSI	GKGCMC	2 cut(s)	298, 316
BseXI	GCAGC	3 cut(s)	293, 391, 497
BshFI	GGCC	3 cut(s)	190, 352, 528
BsiHKAI	GWGCWC	2 cut(s)	276, 316
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	516
BsnI	GGCC	3 cut(s)	190, 352, 528
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	3 cut(s)	276, 298, 316
Bsp143I	GATC	3 cut(s)	40, 126, 286
BspANI	GGCC	3 cut(s)	190, 352, 528
BspCNI	CTCAG	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	168, 351
BspT104I	TTCGAA	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	116, 197
BssECI	CCNNGG	2 cut(s)	185, 298
BssMI	GATC	3 cut(s)	40, 126, 286
BssT1I	CCWWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	302, 464
Bst6I	CTCTTC	3 cut(s)	4, 216, 564
BstBI	TTCGAA	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	277
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	3 cut(s)	43, 129, 289
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	3 cut(s)	40, 126, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	280, 410
BstSLI	GKGCMC	2 cut(s)	298, 316
BstV1I	GCAGC	3 cut(s)	293, 391, 497
BstV2I	GAAGAC	1 cut(s)	605
BsuRI	GGCC	3 cut(s)	190, 352, 528
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	7 cut(s)	90, 123, 136, 204, 285, 296, 469
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	82
CfoI	GCGC	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	206, 350, 526
Csp6I	GTAC	1 cut(s)	608
CviAII	CATG	3 cut(s)	83, 361, 595
CviQI	GTAC	1 cut(s)	608
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	3 cut(s)	42, 128, 288
DpnII	GATC	3 cut(s)	40, 126, 286
Eam1104I	CTCTTC	3 cut(s)	4, 216, 564
EarI	CTCTTC	3 cut(s)	4, 216, 564
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	206
Eco53kI	GAGCTC	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	274
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRI	GAATTC	2 cut(s)	356, 365
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	3 cut(s)	86, 364, 598
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	3 cut(s)	82, 360, 594
FauNDI	CATATG	1 cut(s)	33
FbaI	TGATCA	2 cut(s)	40, 286
Fnu4HI	GCNGC	3 cut(s)	307, 405, 486
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	307, 405, 486
FspBI	CTAG	1 cut(s)	230
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	307, 405, 486
HaeIII	GGCC	3 cut(s)	190, 352, 528
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	86, 364, 598
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HinfI	GANTC	5 cut(s)	173, 193, 221, 240, 550
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	67, 113, 373
Hpy188III	TCNNGA	5 cut(s)	44, 83, 164, 218, 254
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	302, 464
HpyCH4V	TGCA	4 cut(s)	202, 314, 407, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	280, 410
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	3 cut(s)	86, 364, 598
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	2 cut(s)	40, 286
Kzo9I	GATC	3 cut(s)	40, 126, 286
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	8 cut(s)	129, 149, 183, 210, 297, 366, 474, 576
Lsp1109I	GCAGC	3 cut(s)	293, 391, 497
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	3 cut(s)	42, 128, 288
MboI	GATC	3 cut(s)	40, 126, 286
MboII	GAAGA	6 cut(s)	21, 203, 206, 548, 581, 610
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	3 cut(s)	276, 298, 316
MluCI	AATT	4 cut(s)	356, 365, 398, 408
MmeI	TCCRAC	2 cut(s)	217, 432
MnlI	CCTC	5 cut(s)	61, 219, 387, 391, 464
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	408
MwoI	GCNNNNNNNGC	2 cut(s)	280, 410
NdeI	CATATG	1 cut(s)	33
NdeII	GATC	3 cut(s)	40, 126, 286
NlaIII	CATG	3 cut(s)	86, 364, 598
NlaIV	GGNNCC	2 cut(s)	168, 351
NspV	TTCGAA	1 cut(s)	396
PagI	TCATGA	1 cut(s)	82
PfeI	GAWTC	5 cut(s)	173, 193, 221, 240, 550
PkrI	GCNGC	3 cut(s)	308, 406, 487
PpuMI	RGGWCCY	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	168, 351
PspPI	GGNCC	3 cut(s)	206, 350, 526
PspPPI	RGGWCCY	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	1 cut(s)	609
RsaNI	GTAC	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	3 cut(s)	307, 405, 486
Sau3AI	GATC	3 cut(s)	40, 126, 286
Sau96I	GGNCC	3 cut(s)	206, 350, 526
SduI	GDGCHC	3 cut(s)	276, 298, 316
SetI	ASST	7 cut(s)	72, 103, 211, 276, 432, 490, 620
SfaNI	GCATC	1 cut(s)	472
SfuI	TTCGAA	1 cut(s)	396
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	4 cut(s)	356, 365, 398, 408
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	302, 464
TaqI	TCGA	2 cut(s)	217, 396
TasI	AATT	4 cut(s)	356, 365, 398, 408
TatI	WGTACW	1 cut(s)	607
TfiI	GAWTC	5 cut(s)	173, 193, 221, 240, 550
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	7 cut(s)	97, 123, 136, 204, 285, 296, 469
TseI	GCWGC	3 cut(s)	306, 404, 485
TspDTI	ATGAA	5 cut(s)	63, 99, 341, 349, 611
TspRI	CASTG	7 cut(s)	97, 123, 136, 204, 285, 296, 469
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	356, 365
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.