Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09230 |
| fragaria_vesca | FvH4_6g12440 |
| malus_domestica | MD04G1142200.v1.1 MD12G1156800.v1.1 |
| prunus_persica | Prupe.6G267600_v2.0.a1 |
| pyrus_communis | pycom04g12920 pycom12g14900 |
| rosa_chinensis | RchiOBHm_Chr3g0464251 |
| rosa_laevigata | RLG00000024713 |
| rosa_multiflora | Rmu_co7985966.1_g000001 Rmu_sc0007811.1_g000007 Rmu_sc0024604.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00415900 |
| rosa_rugosa | Rorug03G0071100 Rorug03G0071100 |
| rosa_samantha | Rh3BG132900 Rh3CG135100 Rh3DG134300 |
| rosa_wichuraiana | Rw3G010870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 826 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 195 |
| AccI | GTMKAC | 3 cut(s) | 45, 578, 1042 |
| AccII | CGCG | 1 cut(s) | 213 |
| AccIII | TCCGGA | 2 cut(s) | 142, 221 |
| AciI | CCGC | 5 cut(s) | 72, 86, 96, 211, 213 |
| AclWI | GGATC | 4 cut(s) | 425, 438, 707, 720 |
| AcoI | YGGCCR | 3 cut(s) | 15, 87, 706 |
| AcsI | RAATTY | 3 cut(s) | 216, 807, 911 |
| AcuI | CTGAAG | 1 cut(s) | 525 |
| AcvI | CACGTG | 1 cut(s) | 671 |
| AcyI | GRCGYC | 2 cut(s) | 48, 63 |
| AfaI | GTAC | 1 cut(s) | 649 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 195, 749 |
| AflII | CTTAAG | 1 cut(s) | 278 |
| AflIII | ACRYGT | 1 cut(s) | 670 |
| AgsI | TTSAA | 4 cut(s) | 470, 749, 764, 944 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 604 |
| AjnI | CCWGG | 3 cut(s) | 188, 373, 708 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 744, 776 |
| AluBI | AGCT | 4 cut(s) | 201, 265, 480, 1034 |
| AluI | AGCT | 4 cut(s) | 201, 265, 480, 1034 |
| Alw26I | GTCTC | 2 cut(s) | 144, 1062 |
| AlwI | GGATC | 4 cut(s) | 425, 438, 707, 720 |
| Aor13HI | TCCGGA | 2 cut(s) | 142, 221 |
| AoxI | GGCC | 8 cut(s) | 15, 87, 131, 186, 659, 706, 734, 896 |
| ApeKI | GCWGC | 6 cut(s) | 323, 353, 767, 849, 950, 1031 |
| ApoI | RAATTY | 3 cut(s) | 216, 807, 911 |
| AspLEI | GCGC | 1 cut(s) | 285 |
| AspS9I | GGNCC | 5 cut(s) | 131, 186, 228, 752, 896 |
| AsuC2I | CCSGG | 1 cut(s) | 428 |
| AsuHPI | GGTGA | 4 cut(s) | 184, 536, 827, 1037 |
| AvaII | GGWCC | 2 cut(s) | 228, 752 |
| BalI | TGGCCA | 1 cut(s) | 708 |
| BamHI | GGATCC | 2 cut(s) | 430, 712 |
| BanI | GGYRCC | 1 cut(s) | 826 |
| BbrPI | CACGTG | 1 cut(s) | 671 |
| BbsI | GAAGAC | 4 cut(s) | 63, 156, 603, 1151 |
| BbvI | GCAGC | 6 cut(s) | 335, 340, 779, 836, 937, 1043 |
| BccI | CCATC | 2 cut(s) | 281, 608 |
| BceAI | ACGGC | 1 cut(s) | 17 |
| BciT130I | CCWGG | 3 cut(s) | 190, 375, 710 |
| BclI | TGATCA | 2 cut(s) | 586, 832 |
| BcnI | CCSGG | 1 cut(s) | 428 |
| BcoDI | GTCTC | 2 cut(s) | 144, 1062 |
| BfaI | CTAG | 2 cut(s) | 572, 776 |
| BfrI | CTTAAG | 1 cut(s) | 278 |
| BisI | GCNGC | 8 cut(s) | 73, 87, 324, 354, 768, 850, 951, 1032 |
| BlsI | GCNGC | 8 cut(s) | 74, 88, 325, 355, 769, 851, 952, 1033 |
| Bme1390I | CCNGG | 4 cut(s) | 190, 375, 428, 710 |
| Bme18I | GGWCC | 2 cut(s) | 228, 752 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 604 |
| BmgT120I | GGNCC | 5 cut(s) | 131, 186, 228, 752, 896 |
| BmiI | GGNNCC | 8 cut(s) | 6, 132, 187, 248, 432, 714, 828, 897 |
| BmrFI | CCNGG | 4 cut(s) | 190, 375, 428, 710 |
| BmsI | GCATC | 2 cut(s) | 506, 1018 |
| BpiI | GAAGAC | 4 cut(s) | 63, 156, 603, 1151 |
| BpuEI | CTTGAG | 1 cut(s) | 1044 |
| BpuMI | CCSGG | 1 cut(s) | 428 |
| BsaAI | YACGTR | 1 cut(s) | 671 |
| BsaHI | GRCGYC | 2 cut(s) | 48, 63 |
| BsaI | GGTCTC | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 4 cut(s) | 18, 134, 211, 337 |
| BsaWI | WCCGGW | 4 cut(s) | 7, 142, 221, 249 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 395, 425 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 195, 749 |
| Bse118I | RCCGGY | 1 cut(s) | 243 |
| Bse1I | ACTGG | 4 cut(s) | 18, 410, 662, 743 |
| Bse3DI | GCAATG | 1 cut(s) | 725 |
| BseAI | TCCGGA | 2 cut(s) | 142, 221 |
| BseBI | CCWGG | 3 cut(s) | 190, 375, 710 |
| BseDI | CCNNGG | 4 cut(s) | 18, 134, 211, 337 |
| BseGI | GGATG | 1 cut(s) | 273 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 195, 749 |
| BseMI | GCAATG | 1 cut(s) | 725 |
| BseMII | CTCAG | 3 cut(s) | 152, 288, 909 |
| BseNI | ACTGG | 4 cut(s) | 18, 410, 662, 743 |
| BseRI | GAGGAG | 2 cut(s) | 314, 1097 |
| BseXI | GCAGC | 6 cut(s) | 335, 340, 779, 836, 937, 1043 |
| Bsh1236I | CGCG | 1 cut(s) | 213 |
| BshFI | GGCC | 8 cut(s) | 17, 89, 133, 188, 661, 708, 736, 898 |
| BshNI | GGYRCC | 1 cut(s) | 826 |
| BsiSI | CCGG | 8 cut(s) | 8, 66, 143, 222, 231, 244, 250, 427 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 195, 749 |
| BsmAI | GTCTC | 2 cut(s) | 144, 1062 |
| BsmBI | CGTCTC | 1 cut(s) | 1062 |
| BsnI | GGCC | 8 cut(s) | 17, 89, 133, 188, 661, 708, 736, 898 |
| Bso31I | GGTCTC | 1 cut(s) | 144 |
| Bsp13I | TCCGGA | 2 cut(s) | 142, 221 |
| Bsp143I | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| Bsp19I | CCATGG | 1 cut(s) | 337 |
| BspACI | CCGC | 5 cut(s) | 72, 86, 96, 211, 213 |
| BspANI | GGCC | 8 cut(s) | 17, 89, 133, 188, 661, 708, 736, 898 |
| BspCNI | CTCAG | 3 cut(s) | 153, 289, 910 |
| BspEI | TCCGGA | 2 cut(s) | 142, 221 |
| BspFNI | CGCG | 1 cut(s) | 213 |
| BspHI | TCATGA | 1 cut(s) | 1111 |
| BspLI | GGNNCC | 8 cut(s) | 6, 132, 187, 248, 432, 714, 828, 897 |
| BspPI | GGATC | 4 cut(s) | 425, 438, 707, 720 |
| BspT107I | GGYRCC | 1 cut(s) | 826 |
| BspTI | CTTAAG | 1 cut(s) | 278 |
| BspTNI | GGTCTC | 1 cut(s) | 144 |
| BsrDI | GCAATG | 1 cut(s) | 725 |
| BsrFI | RCCGGY | 1 cut(s) | 243 |
| BsrI | ACTGG | 4 cut(s) | 18, 410, 662, 743 |
| BssAI | RCCGGY | 1 cut(s) | 243 |
| BssECI | CCNNGG | 4 cut(s) | 18, 134, 211, 337 |
| BssMI | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| BssNAI | GTATAC | 2 cut(s) | 579, 1043 |
| BssNI | GRCGYC | 2 cut(s) | 48, 63 |
| BssT1I | CCWWGG | 2 cut(s) | 134, 337 |
| Bst1107I | GTATAC | 2 cut(s) | 579, 1043 |
| Bst2UI | CCWGG | 3 cut(s) | 190, 375, 710 |
| Bst4CI | ACNGT | 1 cut(s) | 228 |
| Bst6I | CTCTTC | 1 cut(s) | 1110 |
| BstACI | GRCGYC | 2 cut(s) | 48, 63 |
| BstAFI | CTTAAG | 1 cut(s) | 278 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 240 |
| BstBAI | YACGTR | 1 cut(s) | 671 |
| BstC8I | GCNNGC | 3 cut(s) | 211, 245, 287 |
| BstDEI | CTNAG | 3 cut(s) | 161, 297, 918 |
| BstDSI | CCRYGG | 2 cut(s) | 211, 337 |
| BstF5I | GGATG | 1 cut(s) | 273 |
| BstFNI | CGCG | 1 cut(s) | 213 |
| BstHHI | GCGC | 1 cut(s) | 285 |
| BstKTI | GATC | 6 cut(s) | 207, 310, 433, 589, 715, 835 |
| BstMAI | GTCTC | 2 cut(s) | 144, 1062 |
| BstMBI | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 166, 240, 359, 855, 956, 1072 |
| BstNI | CCWGG | 3 cut(s) | 190, 375, 710 |
| BstSCI | CCNGG | 4 cut(s) | 188, 373, 426, 708 |
| BstUI | CGCG | 1 cut(s) | 213 |
| BstV1I | GCAGC | 6 cut(s) | 335, 340, 779, 836, 937, 1043 |
| BstV2I | GAAGAC | 4 cut(s) | 63, 156, 603, 1151 |
| BstX2I | RGATCY | 2 cut(s) | 430, 712 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 704 |
| BstYI | RGATCY | 2 cut(s) | 430, 712 |
| BstZ17I | GTATAC | 2 cut(s) | 579, 1043 |
| BsuRI | GGCC | 8 cut(s) | 17, 89, 133, 188, 661, 708, 736, 898 |
| BtgI | CCRYGG | 2 cut(s) | 211, 337 |
| BtsCI | GGATG | 1 cut(s) | 273 |
| BtsIMutI | CAGTG | 3 cut(s) | 403, 669, 842 |
| Cac8I | GCNNGC | 3 cut(s) | 211, 245, 287 |
| CciI | TCATGA | 1 cut(s) | 1111 |
| CfoI | GCGC | 1 cut(s) | 285 |
| Cfr10I | RCCGGY | 1 cut(s) | 243 |
| Cfr13I | GGNCC | 5 cut(s) | 131, 186, 228, 752, 896 |
| Cfr42I | CCGCGG | 1 cut(s) | 214 |
| CpoI | CGGWCCG | 1 cut(s) | 228 |
| CseI | GACGC | 3 cut(s) | 56, 71, 1044 |
| Csp6I | GTAC | 1 cut(s) | 648 |
| CspI | CGGWCCG | 1 cut(s) | 228 |
| CviAII | CATG | 6 cut(s) | 338, 593, 845, 1052, 1112, 1141 |
| CviQI | GTAC | 1 cut(s) | 648 |
| DdeI | CTNAG | 3 cut(s) | 161, 297, 918 |
| DpnI | GATC | 6 cut(s) | 206, 309, 432, 588, 714, 834 |
| DpnII | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| DriI | GACNNNNNGTC | 1 cut(s) | 604 |
| EaeI | YGGCCR | 3 cut(s) | 15, 87, 706 |
| Eam1104I | CTCTTC | 1 cut(s) | 1110 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 604 |
| EarI | CTCTTC | 1 cut(s) | 1110 |
| EciI | GGCGGA | 1 cut(s) | 111 |
| Eco130I | CCWWGG | 2 cut(s) | 134, 337 |
| Eco31I | GGTCTC | 1 cut(s) | 144 |
| Eco47I | GGWCC | 2 cut(s) | 228, 752 |
| Eco57I | CTGAAG | 1 cut(s) | 525 |
| Eco72I | CACGTG | 1 cut(s) | 671 |
| EcoO109I | RGGNCCY | 2 cut(s) | 131, 752 |
| EcoRI | GAATTC | 1 cut(s) | 911 |
| EcoRII | CCWGG | 3 cut(s) | 188, 373, 708 |
| EcoT14I | CCWWGG | 2 cut(s) | 134, 337 |
| ErhI | CCWWGG | 2 cut(s) | 134, 337 |
| Esp3I | CGTCTC | 1 cut(s) | 1062 |
| FaeI | CATG | 6 cut(s) | 341, 596, 848, 1055, 1115, 1144 |
| FatI | CATG | 6 cut(s) | 337, 592, 844, 1051, 1111, 1140 |
| FauI | CCCGC | 1 cut(s) | 218 |
| FbaI | TGATCA | 2 cut(s) | 586, 832 |
| FblI | GTMKAC | 3 cut(s) | 45, 578, 1042 |
| Fnu4HI | GCNGC | 8 cut(s) | 73, 87, 324, 354, 768, 850, 951, 1032 |
| FokI | GGATG | 1 cut(s) | 260 |
| Fsp4HI | GCNGC | 8 cut(s) | 73, 87, 324, 354, 768, 850, 951, 1032 |
| FspBI | CTAG | 2 cut(s) | 572, 776 |
| GlaI | GCGC | 1 cut(s) | 284 |
| GluI | GCNGC | 8 cut(s) | 73, 87, 324, 354, 768, 850, 951, 1032 |
| HaeIII | GGCC | 8 cut(s) | 17, 89, 133, 188, 661, 708, 736, 898 |
| HapII | CCGG | 8 cut(s) | 8, 66, 143, 222, 231, 244, 250, 427 |
| HgaI | GACGC | 3 cut(s) | 56, 71, 1044 |
| HhaI | GCGC | 1 cut(s) | 285 |
| Hin1I | GRCGYC | 2 cut(s) | 48, 63 |
| Hin1II | CATG | 6 cut(s) | 341, 596, 848, 1055, 1115, 1144 |
| Hin6I | GCGC | 1 cut(s) | 283 |
| HinP1I | GCGC | 1 cut(s) | 283 |
| HincII | GTYRAC | 3 cut(s) | 46, 609, 1161 |
| HindII | GTYRAC | 3 cut(s) | 46, 609, 1161 |
| HinfI | GANTC | 5 cut(s) | 23, 163, 452, 1087, 1096 |
| HpaII | CCGG | 8 cut(s) | 8, 66, 143, 222, 231, 244, 250, 427 |
| HphI | GGTGA | 4 cut(s) | 184, 536, 827, 1037 |
| Hpy166II | GTNNAC | 5 cut(s) | 46, 579, 609, 1043, 1161 |
| Hpy188I | TCNGA | 7 cut(s) | 55, 298, 312, 451, 505, 919, 936 |
| Hpy188III | TCNNGA | 5 cut(s) | 143, 222, 434, 572, 1112 |
| Hpy8I | GTNNAC | 5 cut(s) | 46, 579, 609, 1043, 1161 |
| Hpy99I | CGWCG | 4 cut(s) | 32, 50, 65, 426 |
| HpyAV | CCTTC | 4 cut(s) | 103, 545, 726, 797 |
| HpyCH4III | ACNGT | 1 cut(s) | 228 |
| HpyCH4IV | ACGT | 2 cut(s) | 421, 670 |
| HpyCH4V | TGCA | 7 cut(s) | 323, 356, 730, 858, 953, 1013, 1031 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 166, 240, 359, 855, 956, 1072 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 297, 918 |
| HpySE526I | ACGT | 2 cut(s) | 421, 670 |
| Hsp92I | GRCGYC | 2 cut(s) | 48, 63 |
| Hsp92II | CATG | 6 cut(s) | 341, 596, 848, 1055, 1115, 1144 |
| HspAI | GCGC | 1 cut(s) | 283 |
| Kpn2I | TCCGGA | 2 cut(s) | 142, 221 |
| KroI | GCCGGC | 1 cut(s) | 243 |
| KroNI | GCCGGC | 1 cut(s) | 245 |
| Ksp22I | TGATCA | 2 cut(s) | 586, 832 |
| KspI | CCGCGG | 1 cut(s) | 214 |
| Kzo9I | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| LmnI | GCTCC | 2 cut(s) | 198, 252 |
| Lsp1109I | GCAGC | 6 cut(s) | 335, 340, 779, 836, 937, 1043 |
| LweI | GCATC | 2 cut(s) | 506, 1018 |
| MaeI | CTAG | 2 cut(s) | 572, 776 |
| MaeII | ACGT | 2 cut(s) | 421, 670 |
| MaeIII | GTNAC | 3 cut(s) | 257, 971, 1018 |
| MalI | GATC | 6 cut(s) | 206, 309, 432, 588, 714, 834 |
| MboI | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| MfeI | CAATTG | 2 cut(s) | 954, 1067 |
| MflI | RGATCY | 2 cut(s) | 430, 712 |
| MlsI | TGGCCA | 1 cut(s) | 708 |
| MluNI | TGGCCA | 1 cut(s) | 708 |
| MlyI | GAGTC | 3 cut(s) | 17, 172, 1096 |
| Mox20I | TGGCCA | 1 cut(s) | 708 |
| MroI | TCCGGA | 2 cut(s) | 142, 221 |
| MroNI | GCCGGC | 1 cut(s) | 243 |
| MscI | TGGCCA | 1 cut(s) | 708 |
| MseI | TTAA | 3 cut(s) | 279, 987, 1133 |
| MslI | CAYNNNNRTG | 1 cut(s) | 702 |
| Msp20I | TGGCCA | 1 cut(s) | 708 |
| MspA1I | CMGCKG | 2 cut(s) | 213, 1034 |
| MspCI | CTTAAG | 1 cut(s) | 278 |
| MspI | CCGG | 8 cut(s) | 8, 66, 143, 222, 231, 244, 250, 427 |
| MspR9I | CCNGG | 4 cut(s) | 190, 375, 428, 710 |
| MunI | CAATTG | 2 cut(s) | 954, 1067 |
| MvaI | CCWGG | 3 cut(s) | 190, 375, 710 |
| MvnI | CGCG | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 166, 240, 359, 855, 956, 1072 |
| NaeI | GCCGGC | 1 cut(s) | 245 |
| NciI | CCSGG | 1 cut(s) | 428 |
| NcoI | CCATGG | 1 cut(s) | 337 |
| NdeII | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| NgoMIV | GCCGGC | 1 cut(s) | 243 |
| NlaIII | CATG | 6 cut(s) | 341, 596, 848, 1055, 1115, 1144 |
| NlaIV | GGNNCC | 8 cut(s) | 6, 132, 187, 248, 432, 714, 828, 897 |
| NmeAIII | GCCGAG | 1 cut(s) | 43 |
| PagI | TCATGA | 1 cut(s) | 1111 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 36, 51 |
| PdiI | GCCGGC | 1 cut(s) | 245 |
| PfeI | GAWTC | 2 cut(s) | 452, 1096 |
| PflFI | GACNNNGTC | 1 cut(s) | 26 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 195 |
| PkrI | GCNGC | 8 cut(s) | 74, 88, 325, 355, 769, 851, 952, 1033 |
| PleI | GAGTC | 3 cut(s) | 17, 171, 1095 |
| PmaCI | CACGTG | 1 cut(s) | 671 |
| PmlI | CACGTG | 1 cut(s) | 671 |
| PpsI | GAGTC | 3 cut(s) | 17, 171, 1095 |
| Ppu21I | YACGTR | 1 cut(s) | 671 |
| PpuMI | RGGWCCY | 1 cut(s) | 752 |
| Psp5II | RGGWCCY | 1 cut(s) | 752 |
| Psp6I | CCWGG | 3 cut(s) | 188, 373, 708 |
| PspCI | CACGTG | 1 cut(s) | 671 |
| PspGI | CCWGG | 3 cut(s) | 188, 373, 708 |
| PspN4I | GGNNCC | 8 cut(s) | 6, 132, 187, 248, 432, 714, 828, 897 |
| PspPI | GGNCC | 5 cut(s) | 131, 186, 228, 752, 896 |
| PspPPI | RGGWCCY | 1 cut(s) | 752 |
| PsuI | RGATCY | 2 cut(s) | 430, 712 |
| PsyI | GACNNNGTC | 1 cut(s) | 26 |
| PvuII | CAGCTG | 1 cut(s) | 1034 |
| RsaI | GTAC | 1 cut(s) | 649 |
| RsaNI | GTAC | 1 cut(s) | 648 |
| RseI | CAYNNNNRTG | 1 cut(s) | 702 |
| Rsr2I | CGGWCCG | 1 cut(s) | 228 |
| RsrII | CGGWCCG | 1 cut(s) | 228 |
| SacII | CCGCGG | 1 cut(s) | 214 |
| SalI | GTCGAC | 1 cut(s) | 44 |
| SaqAI | TTAA | 3 cut(s) | 279, 987, 1133 |
| SatI | GCNGC | 8 cut(s) | 73, 87, 324, 354, 768, 850, 951, 1032 |
| Sau3AI | GATC | 6 cut(s) | 204, 307, 430, 586, 712, 832 |
| Sau96I | GGNCC | 5 cut(s) | 131, 186, 228, 752, 896 |
| SchI | GAGTC | 3 cut(s) | 17, 172, 1096 |
| ScrFI | CCNGG | 4 cut(s) | 190, 375, 428, 710 |
| SfaNI | GCATC | 2 cut(s) | 506, 1018 |
| Sfr303I | CCGCGG | 1 cut(s) | 214 |
| SgrBI | CCGCGG | 1 cut(s) | 214 |
| SinI | GGWCC | 2 cut(s) | 228, 752 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 702 |
| SmlI | CTYRAG | 2 cut(s) | 278, 1059 |
| SmoI | CTYRAG | 2 cut(s) | 278, 1059 |
| SsiI | CCGC | 5 cut(s) | 72, 86, 96, 211, 213 |
| SspMI | CTAG | 2 cut(s) | 572, 776 |
| StyD4I | CCNGG | 4 cut(s) | 188, 373, 426, 708 |
| StyI | CCWWGG | 2 cut(s) | 134, 337 |
| TaaI | ACNGT | 1 cut(s) | 228 |
| TaiI | ACGT | 2 cut(s) | 424, 673 |
| TaqI | TCGA | 5 cut(s) | 39, 45, 267, 801, 1090 |
| TatI | WGTACW | 1 cut(s) | 647 |
| TauI | GCSGC | 2 cut(s) | 75, 89 |
| TfiI | GAWTC | 2 cut(s) | 452, 1096 |
| Tru1I | TTAA | 3 cut(s) | 279, 987, 1133 |
| Tru9I | TTAA | 3 cut(s) | 279, 987, 1133 |
| TscAI | CASTG | 3 cut(s) | 410, 669, 842 |
| TseI | GCWGC | 6 cut(s) | 323, 353, 767, 849, 950, 1031 |
| TspDTI | ATGAA | 9 cut(s) | 458, 525, 609, 645, 708, 1097, 1109, 1128, 1157 |
| TspGWI | ACGGA | 1 cut(s) | 16 |
| TspRI | CASTG | 3 cut(s) | 410, 669, 842 |
| Tth111I | GACNNNGTC | 1 cut(s) | 26 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 195 |
| Vha464I | CTTAAG | 1 cut(s) | 278 |
| VpaK11BI | GGWCC | 2 cut(s) | 228, 752 |
| XapI | RAATTY | 3 cut(s) | 216, 807, 911 |
| XbaI | TCTAGA | 1 cut(s) | 571 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 335 |
| XmiI | GTMKAC | 3 cut(s) | 45, 578, 1042 |
| XspI | CTAG | 2 cut(s) | 572, 776 |