MD04G1142200.v1.1
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
23105680 .. 23108031
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1142200.v1.1.491

Sequence Viewer

Length: 1176 bp
ATGGAAATGGAAGTCGCCGACGACCCCGCCGCTGTAGAAATAGACGCCGGAGACTGCGGAGATTGCGGTGAAGAGGCTGCGGCGGGAGGCGGAGCCGGAAGCCGTAGGAAATCGGGGCGGGACAACGTGAAGGGTCCTTGGTCTCCGGAAGAAGACGCGGTGCTGAGTCGGTTGGTGAGCAATTTCGGGGCTAGGAATTGGAGCTTGATCGCCCGAGGAATTGACGGACGATCCGGCAAGTCCTGCCGCCTGCGGTGGTGCAACCAGCTCGACCCCGCCGTCAAGCGCAAACCCTTTACTGATGCGGAGGATCGGATGATAGTTGCAGCCCATGCAGTCCACGGAAACAAATGGGCTGCAATTGCTCGGCTTCTACCAGGGAGGACTGATAATGCCATAAAAAACCATTGGAATTCCACATTAAAGCGCCGGTGCATGGACCCTGAGAAAATAAAGTTAGAATCTGGTAATATGGTTGAAGATGTTAGCTTAGACAAAACAAAAGGATCATCTGAAGAGACCTTCTCGTATGGGGACGTCAATTCATCTAAATCTATGGAAGGAAGAGAAGTCAGTTCTTTTCAGCATATGGATGATCAAGATGAATACAATGGGTCATCAGAGGTTCAGTTTAGTCATGAAGCCACCGAACAGCCTAATCTTTTCAGACCAGTGGCACGGATCAGTGCTTTTAGTGTATACAACCAATCAAATAGCCAGGAGCTTGAATCATCATTCCCAAGGCCGATTCCAGCGCAAGGACCTCTTGTTCGAGAATCAAAACTAGATGTTGGTATCAGTAAATTTCTCAAAGGAGTTTATGGTGAGCTCTCAGTGCCTGATCAGTGTGCCCATGGTTGCTGCTGTGCACAGAATGGTATGAACTTTCAAAACTCGTTGTTGGGGCCAGAATTCGTGGAATTCTCCGAGCCTCCCTTGTTTCCAAGTTTCGAATTGGCTGCAATTGCCACAGATATAAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAATAACAGTGTAAGAGGAATGGGTGATGCAGCTGGTAGAATAACGACTCATGAGTCTCAAGGACAAATGCGGCGTTTTGAGGATAGTAGAACGAATCATCTTTTTCCTGTTGAAGAGAGAAACGATAGGCGAATGGGCATGAAGACCAATGTACTATCAACCTAA

Protein Analysis

392

Amino Acids

43.0

Weight (kDa)

5.37

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 44 - 90 1.8e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 47 - 106 3e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 96 - 140 9.6e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 99 - 145 9.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011822)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 278, 1063
AatII GACGTC 1 cut(s) 540
AccI GTMKAC 1 cut(s) 699
AccII CGCG 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 145
AclWI GGATC 4 cut(s) 225, 318, 514, 689
AcsI RAATTY 4 cut(s) 412, 803, 911, 920
AcuI CTGAAG 1 cut(s) 534
AcyI GRCGYC 2 cut(s) 45, 537
AfaI GTAC 1 cut(s) 1164
AfiI CCNNNNNNNGG 2 cut(s) 436, 758
AgsI TTSAA 4 cut(s) 479, 728, 890, 1124
AjnI CCWGG 2 cut(s) 376, 717
AloI GAACNNNNNNTCC 2 cut(s) 753, 785
AluBI AGCT 6 cut(s) 204, 268, 489, 724, 829, 1043
AluI AGCT 6 cut(s) 204, 268, 489, 724, 829, 1043
Alw21I GWGCWC 2 cut(s) 831, 871
Alw26I GTCTC 4 cut(s) 45, 147, 512, 1071
Alw44I GTGCAC 1 cut(s) 867
AlwI GGATC 4 cut(s) 225, 318, 514, 689
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 213
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 2 cut(s) 743, 905
ApaLI GTGCAC 1 cut(s) 867
ApeKI GCWGC 6 cut(s) 77, 326, 356, 861, 959, 1040
ApoI RAATTY 4 cut(s) 412, 803, 911, 920
ArsI GACNNNNNNTTYG 2 cut(s) 753, 785
AspLEI GCGC 3 cut(s) 288, 429, 757
AspS9I GGNCC 4 cut(s) 134, 439, 761, 905
AsuHPI GGTGA 4 cut(s) 80, 187, 836, 1046
AsuII TTCGAA 1 cut(s) 951
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 3 cut(s) 134, 439, 761
BaeGI GKGCMC 2 cut(s) 853, 871
BanII GRGCYC 1 cut(s) 831
BbsI GAAGAC 2 cut(s) 159, 1160
Bbv12I GWGCWC 2 cut(s) 831, 871
BbvI GCAGC 6 cut(s) 64, 338, 343, 848, 946, 1052
BceAI ACGGC 2 cut(s) 87, 263
BcgI CGANNNNNNTGC 4 cut(s) 250, 284, 941, 975
BciT130I CCWGG 2 cut(s) 378, 719
BclI TGATCA 2 cut(s) 595, 841
BcoDI GTCTC 4 cut(s) 45, 147, 512, 1071
BfaI CTAG 2 cut(s) 192, 785
BfmI CTRYAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 430
Bme1390I CCNGG 2 cut(s) 378, 719
Bme18I GGWCC 3 cut(s) 134, 439, 761
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 4 cut(s) 134, 439, 761, 905
BmiI GGNNCC 4 cut(s) 94, 135, 441, 906
BmrFI CCNGG 2 cut(s) 378, 719
BmsI GCATC 2 cut(s) 292, 1027
BpiI GAAGAC 2 cut(s) 159, 1160
BplI GAGNNNNNCTC 2 cut(s) 509, 541
Bpu14I TTCGAA 1 cut(s) 951
BpuEI CTTGAG 1 cut(s) 1053
BsaHI GRCGYC 2 cut(s) 45, 537
BsaI GGTCTC 2 cut(s) 147, 512
BsaJI CCNNGG 6 cut(s) 137, 214, 340, 377, 740, 853
BsaWI WCCGGW 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 436, 758
Bse118I RCCGGY 1 cut(s) 429
Bse1I ACTGG 1 cut(s) 671
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 2 cut(s) 378, 719
BseDI CCNNGG 6 cut(s) 137, 214, 340, 377, 740, 853
BseGI GGATG 2 cut(s) 321, 598
BseLI CCNNNNNNNGG 2 cut(s) 436, 758
BseMII CTCAG 3 cut(s) 155, 435, 846
BseNI ACTGG 1 cut(s) 671
BseSI GKGCMC 2 cut(s) 853, 871
BseXI GCAGC 6 cut(s) 64, 338, 343, 848, 946, 1052
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 2 cut(s) 745, 907
BsiHKAI GWGCWC 2 cut(s) 831, 871
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 5 cut(s) 48, 96, 146, 234, 430
BslFI GGGAC 2 cut(s) 134, 548
BslI CCNNNNNNNGG 2 cut(s) 436, 758
BsmAI GTCTC 4 cut(s) 45, 147, 512, 1071
BsmFI GGGAC 2 cut(s) 134, 548
BsnI GGCC 2 cut(s) 745, 907
Bso31I GGTCTC 2 cut(s) 147, 512
BsoBI CYCGRG 1 cut(s) 213
Bsp119I TTCGAA 1 cut(s) 951
Bsp1286I GDGCHC 3 cut(s) 831, 853, 871
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
Bsp19I CCATGG 1 cut(s) 853
BspANI GGCC 2 cut(s) 745, 907
BspCNI CTCAG 3 cut(s) 156, 436, 845
BspEI TCCGGA 1 cut(s) 145
BspFNI CGCG 1 cut(s) 158
BspHI TCATGA 2 cut(s) 637, 1060
BspLI GGNNCC 4 cut(s) 94, 135, 441, 906
BspPI GGATC 4 cut(s) 225, 318, 514, 689
BspT104I TTCGAA 1 cut(s) 951
BspTNI GGTCTC 2 cut(s) 147, 512
BsrFI RCCGGY 1 cut(s) 429
BsrI ACTGG 1 cut(s) 671
BssAI RCCGGY 1 cut(s) 429
BssECI CCNNGG 6 cut(s) 137, 214, 340, 377, 740, 853
BssMI GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
BssNAI GTATAC 1 cut(s) 700
BssNI GRCGYC 2 cut(s) 45, 537
BssT1I CCWWGG 3 cut(s) 137, 740, 853
Bst1107I GTATAC 1 cut(s) 700
Bst2UI CCWGG 2 cut(s) 378, 719
Bst4CI ACNGT 1 cut(s) 1019
Bst6I CTCTTC 4 cut(s) 66, 510, 559, 1119
BstACI GRCGYC 2 cut(s) 45, 537
BstAPI GCANNNNNTGC 2 cut(s) 243, 332
BstBI TTCGAA 1 cut(s) 951
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 4 cut(s) 164, 444, 490, 832
BstDSI CCRYGG 2 cut(s) 340, 853
BstF5I GGATG 2 cut(s) 321, 598
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 3 cut(s) 288, 429, 757
BstKTI GATC 7 cut(s) 210, 233, 313, 509, 598, 684, 844
BstMAI GTCTC 4 cut(s) 45, 147, 512, 1071
BstMBI GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
BstMWI GCNNNNNNNGC 6 cut(s) 63, 243, 332, 362, 835, 965
BstNI CCWGG 2 cut(s) 378, 719
BstSCI CCNGG 2 cut(s) 376, 717
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 2 cut(s) 853, 871
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 6 cut(s) 64, 338, 343, 848, 946, 1052
BstV2I GAAGAC 2 cut(s) 159, 1160
BstZ17I GTATAC 1 cut(s) 700
BsuRI GGCC 2 cut(s) 745, 907
BtgI CCRYGG 2 cut(s) 340, 853
BtsCI GGATG 2 cut(s) 321, 598
BtsIMutI CAGTG 5 cut(s) 678, 691, 840, 851, 1024
Cac8I GCNNGC 1 cut(s) 251
CaiI CAGNNNCTG 1 cut(s) 839
CciI TCATGA 2 cut(s) 637, 1060
CfoI GCGC 3 cut(s) 288, 429, 757
Cfr10I RCCGGY 1 cut(s) 429
Cfr13I GGNCC 4 cut(s) 134, 439, 761, 905
CseI GACGC 2 cut(s) 53, 164
Csp6I GTAC 1 cut(s) 1163
CviAII CATG 6 cut(s) 332, 436, 638, 854, 1061, 1150
CviQI GTAC 1 cut(s) 1163
DdeI CTNAG 4 cut(s) 164, 444, 490, 832
DpnI GATC 7 cut(s) 209, 232, 312, 508, 597, 683, 843
DpnII GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
DrdI GACNNNNNNGTC 2 cut(s) 278, 1063
DseDI GACNNNNNNGTC 2 cut(s) 278, 1063
Eam1104I CTCTTC 4 cut(s) 66, 510, 559, 1119
EarI CTCTTC 4 cut(s) 66, 510, 559, 1119
EciI GGCGGA 1 cut(s) 105
Ecl136II GAGCTC 1 cut(s) 829
Eco130I CCWWGG 3 cut(s) 137, 740, 853
Eco24I GRGCYC 1 cut(s) 831
Eco31I GGTCTC 2 cut(s) 147, 512
Eco47I GGWCC 3 cut(s) 134, 439, 761
Eco53kI GAGCTC 1 cut(s) 829
Eco57I CTGAAG 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 829
EcoO109I RGGNCCY 2 cut(s) 134, 761
EcoRI GAATTC 3 cut(s) 412, 911, 920
EcoRII CCWGG 2 cut(s) 376, 717
EcoT14I CCWWGG 3 cut(s) 137, 740, 853
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 3 cut(s) 137, 740, 853
FaeI CATG 6 cut(s) 335, 439, 641, 857, 1064, 1153
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 134, 548
FatI CATG 6 cut(s) 331, 435, 637, 853, 1060, 1149
FauI CCCGC 4 cut(s) 34, 76, 111, 283
FauNDI CATATG 1 cut(s) 588
FbaI TGATCA 2 cut(s) 595, 841
FblI GTMKAC 1 cut(s) 699
FokI GGATG 2 cut(s) 328, 605
FriOI GRGCYC 1 cut(s) 831
FspBI CTAG 2 cut(s) 192, 785
GlaI GCGC 3 cut(s) 287, 428, 756
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 2 cut(s) 745, 907
HapII CCGG 5 cut(s) 48, 96, 146, 234, 430
HgaI GACGC 2 cut(s) 53, 164
HhaI GCGC 3 cut(s) 288, 429, 757
Hin1I GRCGYC 2 cut(s) 45, 537
Hin1II CATG 6 cut(s) 335, 439, 641, 857, 1064, 1153
Hin6I GCGC 3 cut(s) 286, 427, 755
HinP1I GCGC 3 cut(s) 286, 427, 755
HinfI GANTC 8 cut(s) 166, 461, 728, 748, 776, 1057, 1064, 1105
HpaII CCGG 5 cut(s) 48, 96, 146, 234, 430
HphI GGTGA 4 cut(s) 80, 187, 836, 1046
Hpy166II GTNNAC 3 cut(s) 340, 700, 869
Hpy188I TCNGA 5 cut(s) 315, 514, 622, 668, 928
Hpy188III TCNNGA 5 cut(s) 146, 599, 638, 773, 1061
Hpy8I GTNNAC 3 cut(s) 340, 700, 869
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 3 cut(s) 124, 532, 554
HpyCH4III ACNGT 1 cut(s) 1019
HpyCH4IV ACGT 2 cut(s) 126, 537
HpyCH4V TGCA 8 cut(s) 261, 326, 335, 359, 435, 869, 962, 1040
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 243, 332, 362, 835, 965
HpyF3I CTNAG 4 cut(s) 164, 444, 490, 832
HpySE526I ACGT 2 cut(s) 126, 537
Hsp92I GRCGYC 2 cut(s) 45, 537
Hsp92II CATG 6 cut(s) 335, 439, 641, 857, 1064, 1153
HspAI GCGC 3 cut(s) 286, 427, 755
Kpn2I TCCGGA 1 cut(s) 145
Ksp22I TGATCA 2 cut(s) 595, 841
Kzo9I GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
LmnI GCTCC 3 cut(s) 92, 201, 721
Lsp1109I GCAGC 6 cut(s) 64, 338, 343, 848, 946, 1052
LweI GCATC 2 cut(s) 292, 1027
MaeI CTAG 2 cut(s) 192, 785
MaeII ACGT 2 cut(s) 126, 537
MaeIII GTNAC 1 cut(s) 980
MalI GATC 7 cut(s) 209, 232, 312, 508, 597, 683, 843
MboI GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
MboII GAAGA 8 cut(s) 83, 161, 164, 491, 527, 576, 1136, 1165
MfeI CAATTG 2 cut(s) 360, 963
MhlI GDGCHC 3 cut(s) 831, 853, 871
MlyI GAGTC 3 cut(s) 175, 1051, 1073
MmeI TCCRAC 1 cut(s) 987
MroI TCCGGA 1 cut(s) 145
MseI TTAA 2 cut(s) 422, 996
MslI CAYNNNNRTG 1 cut(s) 591
MspA1I CMGCKG 2 cut(s) 32, 1043
MspI CCGG 5 cut(s) 48, 96, 146, 234, 430
MspR9I CCNGG 2 cut(s) 378, 719
MunI CAATTG 2 cut(s) 360, 963
MvaI CCWGG 2 cut(s) 378, 719
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 6 cut(s) 63, 243, 332, 362, 835, 965
NcoI CCATGG 1 cut(s) 853
NdeI CATATG 1 cut(s) 588
NdeII GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
NlaIII CATG 6 cut(s) 335, 439, 641, 857, 1064, 1153
NlaIV GGNNCC 4 cut(s) 94, 135, 441, 906
NmeAIII GCCGAG 1 cut(s) 346
NspV TTCGAA 1 cut(s) 951
PagI TCATGA 2 cut(s) 637, 1060
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 5 cut(s) 461, 728, 748, 776, 1105
PleI GAGTC 3 cut(s) 174, 1051, 1072
PpsI GAGTC 3 cut(s) 174, 1051, 1072
PpuMI RGGWCCY 2 cut(s) 134, 761
Psp124BI GAGCTC 1 cut(s) 831
Psp5II RGGWCCY 2 cut(s) 134, 761
Psp6I CCWGG 2 cut(s) 376, 717
PspGI CCWGG 2 cut(s) 376, 717
PspN4I GGNNCC 4 cut(s) 94, 135, 441, 906
PspPI GGNCC 4 cut(s) 134, 439, 761, 905
PspPPI RGGWCCY 2 cut(s) 134, 761
PstNI CAGNNNCTG 1 cut(s) 839
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 1 cut(s) 1164
RsaNI GTAC 1 cut(s) 1163
RseI CAYNNNNRTG 1 cut(s) 591
SacI GAGCTC 1 cut(s) 831
SaqAI TTAA 2 cut(s) 422, 996
Sau3AI GATC 7 cut(s) 207, 230, 310, 506, 595, 681, 841
Sau96I GGNCC 4 cut(s) 134, 439, 761, 905
SchI GAGTC 3 cut(s) 175, 1051, 1073
ScrFI CCNGG 2 cut(s) 378, 719
SduI GDGCHC 3 cut(s) 831, 853, 871
SfaNI GCATC 2 cut(s) 292, 1027
SfcI CTRYAG 1 cut(s) 33
SfuI TTCGAA 1 cut(s) 951
SgrAI CRCCGGYG 1 cut(s) 429
SinI GGWCC 3 cut(s) 134, 439, 761
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 1068
SmoI CTYRAG 1 cut(s) 1068
SspMI CTAG 2 cut(s) 192, 785
SstI GAGCTC 1 cut(s) 831
StyD4I CCNGG 2 cut(s) 376, 717
StyI CCWWGG 3 cut(s) 137, 740, 853
TaaI ACNGT 1 cut(s) 1019
TaiI ACGT 2 cut(s) 129, 540
TaqI TCGA 3 cut(s) 270, 772, 951
TatI WGTACW 1 cut(s) 1162
TauI GCSGC 4 cut(s) 32, 83, 249, 1084
TfiI GAWTC 5 cut(s) 461, 728, 748, 776, 1105
Tru1I TTAA 2 cut(s) 422, 996
Tru9I TTAA 2 cut(s) 422, 996
TscAI CASTG 5 cut(s) 678, 691, 840, 851, 1024
TseI GCWGC 6 cut(s) 77, 326, 356, 861, 959, 1040
TspDTI ATGAA 5 cut(s) 534, 618, 654, 896, 1166
TspGWI ACGGA 3 cut(s) 240, 357, 694
TspRI CASTG 5 cut(s) 678, 691, 840, 851, 1024
VneI GTGCAC 1 cut(s) 867
VpaK11BI GGWCC 3 cut(s) 134, 439, 761
XapI RAATTY 4 cut(s) 412, 803, 911, 920
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 2 cut(s) 192, 785
ZraI GACGTC 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.