Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011822

Physical Location & Seq

Genomic Coordinates Reverse (-)

17367962 .. 17368570

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g14900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTAGCTTTGACAAAACAAAAGGATCGATCTGAAGAGACCTTCTCGTATGGGGACGTCAATTCGTCTAAATCTATGGAAGGAAGAGAAGTCAGTTCTTTAGAGCATATGGATGATCAAGATGAATACAATGGGTCATCGGAAGTTCAGTTTAGTCATGAAGCCACCGAACAGCCTACTCTCTTTAGACCAATGGCAAGGATCAGTGCTTTTAGTGTATATAACCAATCAAATAGCCAGGAGCCTGCATCATCATTCCCCTGGCCGATTCCAGTGCAAGGACCTCTTGTTCAAGCATCAAAACTAGATGTTGGCATAAATAAGTTTCTTGAAGGAGTTTATGGTGAGCGATCAGTGCCTGATCAGTGTGGCCACGGTTGCTGTCGTGCACAGAGTGGTATGAACTTTCAAAACTCGTTGTTGGGGCCAGAACTTGTGGAATTCTCCGAGCCTCCCTTGTTTCCAAGTTTCGAATTGGCTGCAATTGCCGCAGATATAAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAATAACAGTGTAAGAGCAGTGGGTGAAACGGCTGGTAGAATAACAACTCATGGGTCAAGACCAAACGGGGCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0014070 GO:0019219 GO:0019222 GO:0023051 GO:0023056 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0033993 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000022 GO:2000031 GO:2000112 GO:2001023 GO:2001038 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

203

Amino Acids

22.04

Weight (kDa)

4.76

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09230
fragaria_vesca	FvH4_6g12440
malus_domestica	MD04G1142200.v1.1 MD12G1156800.v1.1
prunus_persica	Prupe.6G267600_v2.0.a1
pyrus_communis	pycom04g12920 pycom12g14900
rosa_chinensis	RchiOBHm_Chr3g0464251
rosa_laevigata	RLG00000024713
rosa_multiflora	Rmu_co7985966.1_g000001 Rmu_sc0007811.1_g000007 Rmu_sc0024604.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415900
rosa_rugosa	Rorug03G0071100 Rorug03G0071100
rosa_samantha	Rh3BG132900 Rh3CG135100 Rh3DG134300
rosa_wichuraiana	Rw3G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
AciI	CCGC	1 cut(s)	489
AclWI	GGATC	2 cut(s)	33, 209
AcoI	YGGCCR	2 cut(s)	263, 370
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	54
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	395
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	293, 332, 410
AjnI	CCWGG	2 cut(s)	237, 260
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	1 cut(s)	32
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	33, 209
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	263, 370, 425
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	281, 425
AsuHPI	GGTGA	2 cut(s)	356, 566
AsuII	TTCGAA	1 cut(s)	471
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	466
BceAI	ACGGC	1 cut(s)	576
BcgI	CGANNNNNNTGC	4 cut(s)	256, 290, 461, 495
BciT130I	CCWGG	2 cut(s)	239, 262
BclI	TGATCA	2 cut(s)	115, 361
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	2 cut(s)	480, 489
BlsI	GCNGC	2 cut(s)	481, 490
Bme1390I	CCNGG	2 cut(s)	239, 262
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	281, 425
BmiI	GGNNCC	2 cut(s)	243, 426
BmrFI	CCNGG	2 cut(s)	239, 262
BmsI	GCATC	2 cut(s)	257, 305
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
Bpu14I	TTCGAA	1 cut(s)	471
Bsa29I	ATCGAT	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	260, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	239, 262
BseCI	ATCGAT	1 cut(s)	28
BseDI	CCNNGG	2 cut(s)	260, 373
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	466
BshFI	GGCC	3 cut(s)	265, 372, 427
BshVI	ATCGAT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	265, 372, 427
Bso31I	GGTCTC	1 cut(s)	32
Bsp119I	TTCGAA	1 cut(s)	471
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
BspACI	CCGC	1 cut(s)	489
BspANI	GGCC	3 cut(s)	265, 372, 427
BspDI	ATCGAT	1 cut(s)	28
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	243, 426
BspPI	GGATC	2 cut(s)	33, 209
BspT104I	TTCGAA	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	260, 373
BssMI	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
BssNI	GRCGYC	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	239, 262
Bst4CI	ACNGT	2 cut(s)	377, 539
Bst6I	CTCTTC	2 cut(s)	30, 79
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	471
BstC8I	GCNNGC	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	6 cut(s)	28, 32, 118, 204, 353, 364
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
BstMWI	GCNNNNNNNGC	4 cut(s)	355, 378, 485, 488
BstNI	CCWGG	2 cut(s)	239, 262
BstSCI	CCNGG	2 cut(s)	237, 260
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	28
BsuRI	GGCC	3 cut(s)	265, 372, 427
BsuTUI	ATCGAT	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	6 cut(s)	211, 279, 360, 371, 544, 555
Cac8I	GCNNGC	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	281, 425
ClaI	ATCGAT	1 cut(s)	28
CviAII	CATG	2 cut(s)	158, 581
DpnI	GATC	6 cut(s)	27, 31, 117, 203, 352, 363
DpnII	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
DraIII	CACNNNGTG	1 cut(s)	395
EaeI	YGGCCR	2 cut(s)	263, 370
Eam1104I	CTCTTC	2 cut(s)	30, 79
EarI	CTCTTC	2 cut(s)	30, 79
Eco31I	GGTCTC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	2 cut(s)	237, 260
FaeI	CATG	2 cut(s)	161, 584
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	157, 580
FauNDI	CATATG	1 cut(s)	108
FbaI	TGATCA	2 cut(s)	115, 361
Fnu4HI	GCNGC	2 cut(s)	480, 489
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	2 cut(s)	480, 489
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	480, 489
HaeIII	GGCC	3 cut(s)	265, 372, 427
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	161, 584
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	2 cut(s)	356, 566
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	34, 142, 448
Hpy188III	TCNNGA	4 cut(s)	119, 158, 329, 588
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	52, 74, 326
HpyCH4III	ACNGT	2 cut(s)	377, 539
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	248, 277, 389, 482
HpyF10VI	GCNNNNNNNGC	4 cut(s)	355, 378, 485, 488
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	161, 584
Ksp22I	TGATCA	2 cut(s)	115, 361
Kzo9I	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	9 cut(s)	224, 247, 251, 258, 274, 285, 372, 441, 549
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	2 cut(s)	257, 305
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	6 cut(s)	27, 31, 117, 203, 352, 363
MboI	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
MboII	GAAGA	2 cut(s)	47, 96
MfeI	CAATTG	1 cut(s)	483
MhlI	GDGCHC	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	4 cut(s)	61, 440, 473, 483
MluNI	TGGCCA	1 cut(s)	372
MmeI	TCCRAC	1 cut(s)	507
MnlI	CCTC	2 cut(s)	294, 462
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	239, 262
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	2 cut(s)	239, 262
MwoI	GCNNNNNNNGC	4 cut(s)	355, 378, 485, 488
NdeI	CATATG	1 cut(s)	108
NdeII	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
NlaIII	CATG	2 cut(s)	161, 584
NlaIV	GGNNCC	2 cut(s)	243, 426
NspV	TTCGAA	1 cut(s)	471
PagI	TCATGA	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	2 cut(s)	481, 490
PpuMI	RGGWCCY	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	237, 260
PspGI	CCWGG	2 cut(s)	237, 260
PspN4I	GGNNCC	2 cut(s)	243, 426
PspPI	GGNCC	2 cut(s)	281, 425
PspPPI	RGGWCCY	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	2 cut(s)	480, 489
Sau3AI	GATC	6 cut(s)	25, 29, 115, 201, 350, 361
Sau96I	GGNCC	2 cut(s)	281, 425
ScrFI	CCNGG	2 cut(s)	239, 262
SduI	GDGCHC	1 cut(s)	391
SetI	ASST	5 cut(s)	10, 44, 60, 286, 507
SfaNI	GCATC	2 cut(s)	257, 305
SfuI	TTCGAA	1 cut(s)	471
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	4 cut(s)	61, 440, 473, 483
SsiI	CCGC	1 cut(s)	489
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	237, 260
TaaI	ACNGT	2 cut(s)	377, 539
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	28, 471
TasI	AATT	4 cut(s)	61, 440, 473, 483
TauI	GCSGC	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	6 cut(s)	211, 279, 360, 371, 544, 555
TseI	GCWGC	1 cut(s)	479
TspDTI	ATGAA	3 cut(s)	138, 174, 416
TspRI	CASTG	6 cut(s)	211, 279, 360, 371, 544, 555
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	440
XspI	CTAG	1 cut(s)	305
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.