MD12G1156800.v1.1
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
23736319 .. 23738679
2361 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1156800.v1.1.491

Sequence Viewer

Length: 1170 bp
ATGGAAACGGAAGTCGCCGACGACCCCGCCGCCGTCGATATCGAAGCTGGATACGGCGGAGTAGATAGCGGCGAAGAGGCTGTGGCGGGAGGCGGAAGCCGTAGAAAATCGGGGCGTGACAACGTGAAGGGTCCTTGGTCTCCGGAAGAAGACGCGGTGCTGACCCGGTTGGTGAGTAATTTCGGGGCGAGGAATTGGAGCTTGATCGCCCGAGGAATCGACGGACGATCCGGCAAGTCTTGTCGCCTGCGGTGGTGTAATCAGCTCGACCCCGCCGTCAAGCGCAAGCCCTTTACTCATGAGGAGGATAGGATGATAGTTGCAGCCCATGCAATCCATGGAAACAAATGGGCTGCAATTGCTCGGCTTCTACCAGGGAGGACAGATAATGCCATAAAAAACCATTGGAATTCCACACTAAAGCGCCGGTGCATGGACACTGACAAAATAAAGTTAGAATCTGGTAATATGGTTGAAGATGTTAGCTTTGACAAAACAAAAGGATCATCTGAAGAGACCTCGTATGGGGACGTCAATTCATCTAAATCTATGGAAGGAAGAGAAGTCAGTTCTTTAGAGCATATGGATGATCAAGATGAATACAACGGGTCATCAGAAGTTCAGTTTAGTCATGAAGCCACCGAACAGCCTACTCTCTTTAGACCAATGGCCAGGATCAGTGCTTTTAGTGTATATAACCAATCAAATAGCCAGGAGCCTGCATCATCATTCCCAAGGCCGATCCCAGTGCAAGGACCTCTTGTTCAAGCATCAAAACTAGATGTTGGCATAAATAAGTTTCTTGAAGGAGTTTATGGTGAGCGATCAGTGCCTGATCGGTGTGGCCACGGTTGCTGTCGTGCAGAGAGTGGTATGAACTTTCAAAACTCGTTGTTGGGGCCAGAATTCGTGGAATTCTCCGAGCCTCCCTTGTTTCCAAGTTTTGAATTGGCTGCAATTGCCACAGATATAAGTAACCTTGCTTGGCTTAAAAGTGGGTTGGAGAATAACAGTGTAAGAGCAGTGGGTGAAACGGCTGGTAGAATAACAACTCATGGGTCTCAAGACCAAACGGGGCGTTTTGAGGAGAGTAGAATGAATCATCTTTTTCCCACTGAAGAGAGAAAGGATAGGCTAATGGGCATGAAGACAAATGTGCTATCAACCTAA

Protein Analysis

390

Amino Acids

42.81

Weight (kDa)

5.44

Isoelectric Point (pI)

41.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 43 - 89 1.7e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 46 - 105 5.6e-16 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 95 - 139 4.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 98 - 144 1.6e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011822)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AatII GACGTC 1 cut(s) 534
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 9 cut(s) 27, 30, 57, 69, 86, 93, 155, 250, 273
AclWI GGATC 4 cut(s) 222, 511, 683, 736
AcoI YGGCCR 2 cut(s) 669, 844
AcsI RAATTY 3 cut(s) 409, 905, 914
AcuI CTGAAG 2 cut(s) 531, 1137
AcyI GRCGYC 1 cut(s) 531
AfiI CCNNNNNNNGG 3 cut(s) 433, 525, 752
AgsI TTSAA 5 cut(s) 476, 767, 806, 884, 947
AjnI CCWGG 3 cut(s) 373, 671, 711
AloI GAACNNNNNNTCC 2 cut(s) 747, 779
AluBI AGCT 4 cut(s) 47, 201, 265, 486
AluI AGCT 4 cut(s) 47, 201, 265, 486
Alw26I GTCTC 3 cut(s) 144, 509, 1065
AlwI GGATC 4 cut(s) 222, 511, 683, 736
AlwNI CAGNNNCTG 1 cut(s) 833
Ama87I CYCGRG 1 cut(s) 210
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 4 cut(s) 669, 737, 844, 899
ApeKI GCWGC 3 cut(s) 323, 353, 953
ApoI RAATTY 3 cut(s) 409, 905, 914
AspLEI GCGC 2 cut(s) 285, 426
AspS9I GGNCC 3 cut(s) 131, 755, 899
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 3 cut(s) 184, 830, 1040
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 2 cut(s) 131, 755
BalI TGGCCA 2 cut(s) 671, 846
BbsI GAAGAC 2 cut(s) 156, 1154
BbvI GCAGC 3 cut(s) 335, 340, 940
BceAI ACGGC 5 cut(s) 17, 70, 84, 260, 1050
BcgI CGANNNNNNTGC 2 cut(s) 730, 764
BciT130I CCWGG 3 cut(s) 375, 673, 713
BciVI GTATCC 1 cut(s) 44
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 3 cut(s) 144, 509, 1065
BfaI CTAG 1 cut(s) 779
BfoI RGCGCY 1 cut(s) 427
BfuI GTATCC 1 cut(s) 44
BisI GCNGC 5 cut(s) 30, 70, 324, 354, 954
BlsI GCNGC 5 cut(s) 31, 71, 325, 355, 955
Bme1390I CCNGG 4 cut(s) 166, 375, 673, 713
Bme18I GGWCC 2 cut(s) 131, 755
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 3 cut(s) 131, 755, 899
BmiI GGNNCC 3 cut(s) 132, 717, 900
BmrFI CCNGG 4 cut(s) 166, 375, 673, 713
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 2 cut(s) 731, 779
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 2 cut(s) 156, 1154
BpuEI CTTGAG 1 cut(s) 1047
BpuMI CCSGG 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 531
BsaI GGTCTC 3 cut(s) 144, 509, 1065
BsaJI CCNNGG 6 cut(s) 134, 211, 337, 374, 734, 847
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 525, 752
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 746
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 3 cut(s) 375, 673, 713
BseDI CCNNGG 6 cut(s) 134, 211, 337, 374, 734, 847
BseGI GGATG 2 cut(s) 318, 592
BseLI CCNNNNNNNGG 3 cut(s) 433, 525, 752
BseNI ACTGG 1 cut(s) 746
BseRI GAGGAG 2 cut(s) 317, 1100
BseXI GCAGC 3 cut(s) 335, 340, 940
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 4 cut(s) 671, 739, 846, 901
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 4 cut(s) 143, 166, 231, 427
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 3 cut(s) 433, 525, 752
BsmAI GTCTC 3 cut(s) 144, 509, 1065
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 4 cut(s) 671, 739, 846, 901
Bso31I GGTCTC 3 cut(s) 144, 509, 1065
BsoBI CYCGRG 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
Bsp19I CCATGG 1 cut(s) 337
BspACI CCGC 9 cut(s) 27, 30, 57, 69, 86, 93, 155, 250, 273
BspANI GGCC 4 cut(s) 671, 739, 846, 901
BspEI TCCGGA 1 cut(s) 142
BspFNI CGCG 1 cut(s) 155
BspHI TCATGA 2 cut(s) 298, 631
BspLI GGNNCC 3 cut(s) 132, 717, 900
BspPI GGATC 4 cut(s) 222, 511, 683, 736
BspTNI GGTCTC 3 cut(s) 144, 509, 1065
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 1 cut(s) 746
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 6 cut(s) 134, 211, 337, 374, 734, 847
BssMI GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
BssNI GRCGYC 1 cut(s) 531
BssT1I CCWWGG 3 cut(s) 134, 337, 734
Bst2UI CCWGG 3 cut(s) 375, 673, 713
Bst4CI ACNGT 2 cut(s) 851, 1013
Bst6I CTCTTC 4 cut(s) 69, 507, 553, 1113
BstACI GRCGYC 1 cut(s) 531
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 3 cut(s) 248, 287, 720
BstDSI CCRYGG 2 cut(s) 337, 847
BstF5I GGATG 2 cut(s) 318, 592
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 2 cut(s) 285, 426
BstKTI GATC 8 cut(s) 207, 230, 506, 592, 678, 744, 827, 838
BstMAI GTCTC 3 cut(s) 144, 509, 1065
BstMBI GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
BstMWI GCNNNNNNNGC 5 cut(s) 329, 359, 829, 852, 959
BstNI CCWGG 3 cut(s) 375, 673, 713
BstSCI CCNGG 4 cut(s) 164, 373, 671, 711
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 335, 340, 940
BstV2I GAAGAC 2 cut(s) 156, 1154
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 4 cut(s) 671, 739, 846, 901
BtgI CCRYGG 2 cut(s) 337, 847
BtsCI GGATG 2 cut(s) 318, 592
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 7 cut(s) 438, 685, 753, 834, 1018, 1029, 1113
Cac8I GCNNGC 3 cut(s) 248, 287, 720
CaiI CAGNNNCTG 1 cut(s) 833
CciI TCATGA 2 cut(s) 298, 631
CfoI GCGC 2 cut(s) 285, 426
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 3 cut(s) 131, 755, 899
CseI GACGC 1 cut(s) 161
CviAII CATG 7 cut(s) 299, 329, 338, 433, 632, 1055, 1144
DpnI GATC 8 cut(s) 206, 229, 505, 591, 677, 743, 826, 837
DpnII GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 2 cut(s) 669, 844
Eam1104I CTCTTC 4 cut(s) 69, 507, 553, 1113
EarI CTCTTC 4 cut(s) 69, 507, 553, 1113
EciI GGCGGA 2 cut(s) 72, 108
Eco130I CCWWGG 3 cut(s) 134, 337, 734
Eco31I GGTCTC 3 cut(s) 144, 509, 1065
Eco32I GATATC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 131, 755
Eco57I CTGAAG 2 cut(s) 531, 1137
Eco88I CYCGRG 1 cut(s) 210
EcoO109I RGGNCCY 2 cut(s) 131, 755
EcoRI GAATTC 3 cut(s) 409, 905, 914
EcoRII CCWGG 3 cut(s) 373, 671, 711
EcoRV GATATC 1 cut(s) 40
EcoT14I CCWWGG 3 cut(s) 134, 337, 734
ErhI CCWWGG 3 cut(s) 134, 337, 734
FaeI CATG 7 cut(s) 302, 332, 341, 436, 635, 1058, 1147
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FaqI GGGAC 1 cut(s) 542
FatI CATG 7 cut(s) 298, 328, 337, 432, 631, 1054, 1143
FauI CCCGC 3 cut(s) 34, 79, 280
FauNDI CATATG 1 cut(s) 582
FbaI TGATCA 1 cut(s) 589
Fnu4HI GCNGC 5 cut(s) 30, 70, 324, 354, 954
FokI GGATG 2 cut(s) 325, 599
Fsp4HI GCNGC 5 cut(s) 30, 70, 324, 354, 954
FspBI CTAG 1 cut(s) 779
GlaI GCGC 2 cut(s) 284, 425
GluI GCNGC 5 cut(s) 30, 70, 324, 354, 954
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 4 cut(s) 671, 739, 846, 901
HapII CCGG 4 cut(s) 143, 166, 231, 427
HgaI GACGC 1 cut(s) 161
HhaI GCGC 2 cut(s) 285, 426
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 7 cut(s) 302, 332, 341, 436, 635, 1058, 1147
Hin6I GCGC 2 cut(s) 283, 424
HinP1I GCGC 2 cut(s) 283, 424
HinfI GANTC 3 cut(s) 216, 458, 1099
HpaII CCGG 4 cut(s) 143, 166, 231, 427
HphI GGTGA 3 cut(s) 184, 830, 1040
Hpy188I TCNGA 3 cut(s) 511, 616, 922
Hpy188III TCNNGA 6 cut(s) 143, 299, 593, 632, 803, 1064
Hpy99I CGWCG 3 cut(s) 23, 38, 224
HpyAV CCTTC 3 cut(s) 121, 548, 800
HpyCH4III ACNGT 2 cut(s) 851, 1013
HpyCH4IV ACGT 2 cut(s) 123, 531
HpyCH4V TGCA 8 cut(s) 323, 332, 356, 432, 722, 751, 863, 956
HpyF10VI GCNNNNNNNGC 5 cut(s) 329, 359, 829, 852, 959
HpySE526I ACGT 2 cut(s) 123, 531
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 7 cut(s) 302, 332, 341, 436, 635, 1058, 1147
HspAI GCGC 2 cut(s) 283, 424
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
LmnI GCTCC 2 cut(s) 198, 715
Lsp1109I GCAGC 3 cut(s) 335, 340, 940
LweI GCATC 2 cut(s) 731, 779
MaeI CTAG 1 cut(s) 779
MaeII ACGT 2 cut(s) 123, 531
MaeIII GTNAC 2 cut(s) 116, 974
MalI GATC 8 cut(s) 206, 229, 505, 591, 677, 743, 826, 837
MboI GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
MboII GAAGA 8 cut(s) 86, 158, 161, 488, 524, 570, 1130, 1159
MfeI CAATTG 2 cut(s) 357, 957
MlsI TGGCCA 2 cut(s) 671, 846
MluCI AATT 9 cut(s) 178, 193, 357, 409, 535, 905, 914, 947, 957
MluNI TGGCCA 2 cut(s) 671, 846
MmeI TCCRAC 1 cut(s) 981
Mox20I TGGCCA 2 cut(s) 671, 846
MroI TCCGGA 1 cut(s) 142
MscI TGGCCA 2 cut(s) 671, 846
MseI TTAA 1 cut(s) 990
MslI CAYNNNNRTG 1 cut(s) 585
Msp20I TGGCCA 2 cut(s) 671, 846
MspI CCGG 4 cut(s) 143, 166, 231, 427
MspR9I CCNGG 4 cut(s) 166, 375, 673, 713
MunI CAATTG 2 cut(s) 357, 957
MvaI CCWGG 3 cut(s) 375, 673, 713
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 5 cut(s) 329, 359, 829, 852, 959
NciI CCSGG 1 cut(s) 166
NcoI CCATGG 1 cut(s) 337
NdeI CATATG 1 cut(s) 582
NdeII GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
NlaIII CATG 7 cut(s) 302, 332, 341, 436, 635, 1058, 1147
NlaIV GGNNCC 3 cut(s) 132, 717, 900
NmeAIII GCCGAG 1 cut(s) 343
NmuCI GTSAC 1 cut(s) 116
PagI TCATGA 2 cut(s) 298, 631
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 3 cut(s) 216, 458, 1099
PkrI GCNGC 5 cut(s) 31, 71, 325, 355, 955
PpuMI RGGWCCY 2 cut(s) 131, 755
Psp5II RGGWCCY 2 cut(s) 131, 755
Psp6I CCWGG 3 cut(s) 373, 671, 711
PspGI CCWGG 3 cut(s) 373, 671, 711
PspN4I GGNNCC 3 cut(s) 132, 717, 900
PspPI GGNCC 3 cut(s) 131, 755, 899
PspPPI RGGWCCY 2 cut(s) 131, 755
PstNI CAGNNNCTG 1 cut(s) 833
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 1 cut(s) 990
SatI GCNGC 5 cut(s) 30, 70, 324, 354, 954
Sau3AI GATC 8 cut(s) 204, 227, 503, 589, 675, 741, 824, 835
Sau96I GGNCC 3 cut(s) 131, 755, 899
ScrFI CCNGG 4 cut(s) 166, 375, 673, 713
SfaNI GCATC 2 cut(s) 731, 779
SgrAI CRCCGGYG 1 cut(s) 426
SinI GGWCC 2 cut(s) 131, 755
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 1 cut(s) 1062
SmoI CTYRAG 1 cut(s) 1062
Sse9I AATT 9 cut(s) 178, 193, 357, 409, 535, 905, 914, 947, 957
SsiI CCGC 9 cut(s) 27, 30, 57, 69, 86, 93, 155, 250, 273
SspMI CTAG 1 cut(s) 779
StyD4I CCNGG 4 cut(s) 164, 373, 671, 711
StyI CCWWGG 3 cut(s) 134, 337, 734
TaaI ACNGT 2 cut(s) 851, 1013
TaiI ACGT 2 cut(s) 126, 534
TaqI TCGA 4 cut(s) 36, 42, 219, 267
TasI AATT 9 cut(s) 178, 193, 357, 409, 535, 905, 914, 947, 957
TauI GCSGC 2 cut(s) 32, 72
TfiI GAWTC 3 cut(s) 216, 458, 1099
Tru1I TTAA 1 cut(s) 990
Tru9I TTAA 1 cut(s) 990
TscAI CASTG 7 cut(s) 445, 685, 753, 834, 1018, 1029, 1120
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 3 cut(s) 323, 353, 953
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 6 cut(s) 528, 612, 648, 890, 1112, 1160
TspGWI ACGGA 2 cut(s) 23, 237
TspRI CASTG 7 cut(s) 445, 685, 753, 834, 1018, 1029, 1120
VpaK11BI GGWCC 2 cut(s) 131, 755
XapI RAATTY 3 cut(s) 409, 905, 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XspI CTAG 1 cut(s) 779
ZraI GACGTC 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.