FvH4_6g12440
MYB Family

Transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
7527573 .. 7531619
4047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12440.t1

Sequence Viewer

Length: 1161 bp
ATGGAACCGGAACTGGCCGAGGACACCGCCGCCGTCATCGGAATCGAAGCGTCTGAAGACGACGCCGGAAGCGGGAAAGATGCGGCAGCCAAAGGCGAAAAGGGTAAGAAGCGTAAGAGCAGAGTGAGAGGGGTTTGGTCTCAGGAAGAAGACCGAATCCTGAGTCGGCTGGTGAGTAAGTTCGGGGCCAGGAATTGGACCTTGATCGCCCGCGGAATTCCAGGACGGTGCGGCAAGTCTTGCCGTCTCCGGTGGTTTAATCAGCTCGACCCAATCCTTAAGCGCAAGCCCTTTTCTGCGGAGGAAGACCGGATGATAATTTCAGCCCATGCAATCCATGGAAACAAATGGTCTGCAATTGCAAAGCTTTTACCAGGGAGAACAGATAATGCCATAAAAAACCACTGGAACTCCACACTACGGCGTCGGGATCCGAACAGATTGATGTCAGAATTGGGTATTGAAGATGTTAGCTTGGACAAAAGAAAAGCATCTTCTGAAGAAACACTCTCAAATGGCGATGTCAATTCATCTAGATCTACAGAAGGAAAAGAAGTCTGTTCTCTAGAGTATACAGATGATCAACATGAAGACAAGGTATCAACGGATGGTCAGTATAGTAATGAAGCCAGAGAACCACGCACGCTTTTTAGGCCGGTTGCACATGTAAGTGCTTTTAGTGTATATAATCATTTAGGTGGCCAGGATCCTTCATCATCATTCCAAAAGCCAATTCCAGTTCAAGGACCTCTGGTTCAAGAAGTGAAACTGGATGTTGGCATTTGTAAATTGGTCGAAGGAATTTATGGTGAGCAGTCGGTGCCTGATCAGTGTGGCCATGGTTGCTGTTGCACACAGAATGGCAGGACTACTGGAAACTCTCTGTTAGGACCAGAATTTGTGGAATTCTCTGAGCCTCCCTGTTTTCCAAGTTTTGAAATGGCTGCAATTGCCACAGATATAAGTAAGCTTGCTTGGCTTAAAAGTGGTTTGGAGAGTAGTAGTGGAATGGTAACAAGTGATGCAGCTGCTAGTAGACTCTCTCATGGGTCTCAAGGGCAATTTGGACATTCTGAGGAAAGTCGAATGAATCGTCTTCTTCGTCAGGAAAAGAGAAAGGATAGGTTAATGGGCATGAAGACTAATGTGCTATCAACCTAA

Protein Analysis

387

Amino Acids

42.51

Weight (kDa)

7.59

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 43 - 89 6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 46 - 105 4e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 95 - 139 1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 98 - 142 6.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011822)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 820
AccB7I CCANNNNNTGG 1 cut(s) 195
AccI GTMKAC 2 cut(s) 572, 1036
AccII CGCG 1 cut(s) 213
AciI CCGC 8 cut(s) 27, 30, 72, 83, 211, 213, 231, 299
AclWI GGATC 4 cut(s) 425, 438, 701, 714
AcoI YGGCCR 3 cut(s) 15, 700, 835
AcsI RAATTY 4 cut(s) 216, 801, 896, 905
AcuI CTGAAG 2 cut(s) 75, 519
AcyI GRCGYC 2 cut(s) 63, 424
AfiI CCNNNNNNNGG 4 cut(s) 72, 195, 420, 743
AflII CTTAAG 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 4 cut(s) 464, 743, 758, 938
AjnI CCWGG 4 cut(s) 188, 220, 373, 702
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AloI GAACNNNNNNTCC 2 cut(s) 738, 770
AluBI AGCT 5 cut(s) 265, 367, 474, 970, 1028
AluI AGCT 5 cut(s) 265, 367, 474, 970, 1028
Alw26I GTCTC 3 cut(s) 144, 251, 1056
AlwI GGATC 4 cut(s) 425, 438, 701, 714
AoxI GGCC 5 cut(s) 15, 186, 653, 700, 835
ApeKI GCWGC 4 cut(s) 86, 944, 1025, 1028
ApoI RAATTY 4 cut(s) 216, 801, 896, 905
ArsI GACNNNNNNTTYG 4 cut(s) 148, 180, 1078, 1110
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 4 cut(s) 186, 198, 746, 890
AsuHPI GGTGA 2 cut(s) 184, 821
AvaII GGWCC 3 cut(s) 198, 746, 890
BalI TGGCCA 2 cut(s) 702, 837
BamHI GGATCC 2 cut(s) 430, 706
BanI GGYRCC 1 cut(s) 820
BbsI GAAGAC 6 cut(s) 63, 156, 312, 597, 1088, 1145
BbvI GCAGC 4 cut(s) 98, 931, 1015, 1037
BccI CCATC 1 cut(s) 602
BceAI ACGGC 3 cut(s) 17, 228, 437
BciT130I CCWGG 4 cut(s) 190, 222, 375, 704
BclI TGATCA 2 cut(s) 580, 826
BcoDI GTCTC 3 cut(s) 144, 251, 1056
BfaI CTAG 3 cut(s) 534, 566, 1032
BfmI CTRYAG 1 cut(s) 540
BfrI CTTAAG 1 cut(s) 278
BglII AGATCT 1 cut(s) 536
BisI GCNGC 7 cut(s) 30, 84, 87, 232, 945, 1026, 1029
BlsI GCNGC 7 cut(s) 31, 85, 88, 233, 946, 1027, 1030
Bme1390I CCNGG 4 cut(s) 190, 222, 375, 704
Bme18I GGWCC 3 cut(s) 198, 746, 890
BmgT120I GGNCC 4 cut(s) 186, 198, 746, 890
BmiI GGNNCC 5 cut(s) 6, 187, 432, 708, 822
BmrFI CCNGG 4 cut(s) 190, 222, 375, 704
BmsI GCATC 3 cut(s) 70, 500, 1012
BpiI GAAGAC 6 cut(s) 63, 156, 312, 597, 1088, 1145
BpuEI CTTGAG 1 cut(s) 1038
BsaHI GRCGYC 2 cut(s) 63, 424
BsaI GGTCTC 2 cut(s) 144, 1056
BsaJI CCNNGG 5 cut(s) 18, 211, 337, 374, 838
BsaWI WCCGGW 3 cut(s) 7, 249, 309
BsaXI ACNNNNNCTCC 2 cut(s) 395, 425
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 195, 420, 743
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 5 cut(s) 18, 410, 737, 774, 877
BseBI CCWGG 4 cut(s) 190, 222, 375, 704
BseDI CCNNGG 5 cut(s) 18, 211, 337, 374, 838
BseGI GGATG 3 cut(s) 318, 613, 778
BseLI CCNNNNNNNGG 4 cut(s) 72, 195, 420, 743
BseMII CTCAG 4 cut(s) 152, 155, 903, 1065
BseNI ACTGG 5 cut(s) 18, 410, 737, 774, 877
BseXI GCAGC 4 cut(s) 98, 931, 1015, 1037
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 5 cut(s) 17, 188, 655, 702, 837
BshNI GGYRCC 1 cut(s) 820
BsiSI CCGG 5 cut(s) 8, 66, 250, 310, 656
BslI CCNNNNNNNGG 4 cut(s) 72, 195, 420, 743
BsmAI GTCTC 3 cut(s) 144, 251, 1056
BsmBI CGTCTC 1 cut(s) 251
BsnI GGCC 5 cut(s) 17, 188, 655, 702, 837
Bso31I GGTCTC 2 cut(s) 144, 1056
Bsp143I GATC 6 cut(s) 204, 430, 536, 580, 706, 826
Bsp19I CCATGG 2 cut(s) 337, 838
BspACI CCGC 8 cut(s) 27, 30, 72, 83, 211, 213, 231, 299
BspANI GGCC 5 cut(s) 17, 188, 655, 702, 837
BspCNI CTCAG 4 cut(s) 153, 154, 904, 1066
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 5 cut(s) 6, 187, 432, 708, 822
BspPI GGATC 4 cut(s) 425, 438, 701, 714
BspT107I GGYRCC 1 cut(s) 820
BspTI CTTAAG 1 cut(s) 278
BspTNI GGTCTC 2 cut(s) 144, 1056
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 5 cut(s) 18, 410, 737, 774, 877
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 5 cut(s) 18, 211, 337, 374, 838
BssMI GATC 6 cut(s) 204, 430, 536, 580, 706, 826
BssNAI GTATAC 1 cut(s) 573
BssNI GRCGYC 2 cut(s) 63, 424
BssT1I CCWWGG 2 cut(s) 337, 838
Bst1107I GTATAC 1 cut(s) 573
Bst2UI CCWGG 4 cut(s) 190, 222, 375, 704
Bst4CI ACNGT 1 cut(s) 228
BstACI GRCGYC 2 cut(s) 63, 424
BstAFI CTTAAG 1 cut(s) 278
BstAPI GCANNNNNTGC 2 cut(s) 240, 820
BstC8I GCNNGC 4 cut(s) 211, 287, 644, 972
BstDEI CTNAG 4 cut(s) 141, 161, 912, 1074
BstDSI CCRYGG 3 cut(s) 211, 337, 838
BstF5I GGATG 3 cut(s) 318, 613, 778
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 6 cut(s) 207, 433, 539, 583, 709, 829
BstMAI GTCTC 3 cut(s) 144, 251, 1056
BstMBI GATC 6 cut(s) 204, 430, 536, 580, 706, 826
BstMWI GCNNNNNNNGC 6 cut(s) 240, 652, 820, 843, 950, 976
BstNI CCWGG 4 cut(s) 190, 222, 375, 704
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 4 cut(s) 188, 220, 373, 702
BstSFI CTRYAG 1 cut(s) 540
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 4 cut(s) 98, 931, 1015, 1037
BstV2I GAAGAC 6 cut(s) 63, 156, 312, 597, 1088, 1145
BstX2I RGATCY 3 cut(s) 430, 536, 706
BstYI RGATCY 3 cut(s) 430, 536, 706
BstZ17I GTATAC 1 cut(s) 573
BsuRI GGCC 5 cut(s) 17, 188, 655, 702, 837
BtgI CCRYGG 3 cut(s) 211, 337, 838
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 3 cut(s) 318, 613, 778
BtsIMutI CAGTG 2 cut(s) 403, 836
Cac8I GCNNGC 4 cut(s) 211, 287, 644, 972
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 4 cut(s) 186, 198, 746, 890
Cfr42I CCGCGG 1 cut(s) 214
CseI GACGC 3 cut(s) 39, 71, 413
CviAII CATG 7 cut(s) 329, 338, 587, 665, 839, 1046, 1135
DdeI CTNAG 4 cut(s) 141, 161, 912, 1074
DpnI GATC 6 cut(s) 206, 432, 538, 582, 708, 828
DpnII GATC 6 cut(s) 204, 430, 536, 580, 706, 826
EaeI YGGCCR 3 cut(s) 15, 700, 835
Eco130I CCWWGG 2 cut(s) 337, 838
Eco31I GGTCTC 2 cut(s) 144, 1056
Eco47I GGWCC 3 cut(s) 198, 746, 890
Eco57I CTGAAG 2 cut(s) 75, 519
EcoO109I RGGNCCY 1 cut(s) 746
EcoRI GAATTC 2 cut(s) 216, 905
EcoRII CCWGG 4 cut(s) 188, 220, 373, 702
EcoT14I CCWWGG 2 cut(s) 337, 838
ErhI CCWWGG 2 cut(s) 337, 838
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 7 cut(s) 332, 341, 590, 668, 842, 1049, 1138
FatI CATG 7 cut(s) 328, 337, 586, 664, 838, 1045, 1134
FauI CCCGC 2 cut(s) 65, 218
FbaI TGATCA 2 cut(s) 580, 826
FblI GTMKAC 2 cut(s) 572, 1036
Fnu4HI GCNGC 7 cut(s) 30, 84, 87, 232, 945, 1026, 1029
FokI GGATG 3 cut(s) 325, 620, 785
Fsp4HI GCNGC 7 cut(s) 30, 84, 87, 232, 945, 1026, 1029
FspBI CTAG 3 cut(s) 534, 566, 1032
GlaI GCGC 1 cut(s) 284
GluI GCNGC 7 cut(s) 30, 84, 87, 232, 945, 1026, 1029
HaeIII GGCC 5 cut(s) 17, 188, 655, 702, 837
HapII CCGG 5 cut(s) 8, 66, 250, 310, 656
HgaI GACGC 3 cut(s) 39, 71, 413
HhaI GCGC 1 cut(s) 285
Hin1I GRCGYC 2 cut(s) 63, 424
Hin1II CATG 7 cut(s) 332, 341, 590, 668, 842, 1049, 1138
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 365, 968
HinfI GANTC 5 cut(s) 42, 156, 163, 1038, 1090
HpaII CCGG 5 cut(s) 8, 66, 250, 310, 656
HphI GGTGA 2 cut(s) 184, 821
Hpy166II GTNNAC 2 cut(s) 573, 1037
Hpy188I TCNGA 7 cut(s) 41, 55, 435, 451, 499, 913, 1075
Hpy188III TCNNGA 7 cut(s) 143, 160, 428, 534, 566, 758, 1106
Hpy8I GTNNAC 2 cut(s) 573, 1037
Hpy99I CGWCG 2 cut(s) 65, 429
HpyAV CCTTC 3 cut(s) 539, 720, 791
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 7 cut(s) 332, 356, 362, 662, 852, 947, 1025
HpyF10VI GCNNNNNNNGC 6 cut(s) 240, 652, 820, 843, 950, 976
HpyF3I CTNAG 4 cut(s) 141, 161, 912, 1074
Hsp92I GRCGYC 2 cut(s) 63, 424
Hsp92II CATG 7 cut(s) 332, 341, 590, 668, 842, 1049, 1138
HspAI GCGC 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 580, 826
KspI CCGCGG 1 cut(s) 214
Kzo9I GATC 6 cut(s) 204, 430, 536, 580, 706, 826
Lsp1109I GCAGC 4 cut(s) 98, 931, 1015, 1037
LweI GCATC 3 cut(s) 70, 500, 1012
MaeI CTAG 3 cut(s) 534, 566, 1032
MaeIII GTNAC 1 cut(s) 1012
MalI GATC 6 cut(s) 206, 432, 538, 582, 708, 828
MboI GATC 6 cut(s) 204, 430, 536, 580, 706, 826
MfeI CAATTG 2 cut(s) 357, 948
MflI RGATCY 3 cut(s) 430, 536, 706
MlsI TGGCCA 2 cut(s) 702, 837
MluNI TGGCCA 2 cut(s) 702, 837
MlyI GAGTC 2 cut(s) 172, 1032
MnlI CCTC 6 cut(s) 13, 122, 295, 759, 927, 1069
Mox20I TGGCCA 2 cut(s) 702, 837
MscI TGGCCA 2 cut(s) 702, 837
MseI TTAA 4 cut(s) 258, 279, 981, 1127
MslI CAYNNNNRTG 2 cut(s) 669, 696
Msp20I TGGCCA 2 cut(s) 702, 837
MspA1I CMGCKG 2 cut(s) 213, 1028
MspCI CTTAAG 1 cut(s) 278
MspI CCGG 5 cut(s) 8, 66, 250, 310, 656
MspR9I CCNGG 4 cut(s) 190, 222, 375, 704
MunI CAATTG 2 cut(s) 357, 948
MvaI CCWGG 4 cut(s) 190, 222, 375, 704
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 6 cut(s) 240, 652, 820, 843, 950, 976
NcoI CCATGG 2 cut(s) 337, 838
NdeII GATC 6 cut(s) 204, 430, 536, 580, 706, 826
NlaIII CATG 7 cut(s) 332, 341, 590, 668, 842, 1049, 1138
NlaIV GGNNCC 5 cut(s) 6, 187, 432, 708, 822
NmeAIII GCCGAG 1 cut(s) 43
NspI RCATGY 1 cut(s) 668
PciI ACATGT 1 cut(s) 664
PcsI WCGNNNNNNNCGW 2 cut(s) 1090, 1099
PfeI GAWTC 3 cut(s) 42, 156, 1090
PflMI CCANNNNNTGG 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 7 cut(s) 31, 85, 88, 233, 946, 1027, 1030
PleI GAGTC 2 cut(s) 171, 1032
PpsI GAGTC 2 cut(s) 171, 1032
PpuMI RGGWCCY 1 cut(s) 746
PscI ACATGT 1 cut(s) 664
Psp5II RGGWCCY 1 cut(s) 746
Psp6I CCWGG 4 cut(s) 188, 220, 373, 702
PspGI CCWGG 4 cut(s) 188, 220, 373, 702
PspN4I GGNNCC 5 cut(s) 6, 187, 432, 708, 822
PspPI GGNCC 4 cut(s) 186, 198, 746, 890
PspPPI RGGWCCY 1 cut(s) 746
PsuI RGATCY 3 cut(s) 430, 536, 706
PvuII CAGCTG 1 cut(s) 1028
RseI CAYNNNNRTG 2 cut(s) 669, 696
SacII CCGCGG 1 cut(s) 214
SaqAI TTAA 4 cut(s) 258, 279, 981, 1127
SatI GCNGC 7 cut(s) 30, 84, 87, 232, 945, 1026, 1029
Sau3AI GATC 6 cut(s) 204, 430, 536, 580, 706, 826
Sau96I GGNCC 4 cut(s) 186, 198, 746, 890
SchI GAGTC 2 cut(s) 172, 1032
ScrFI CCNGG 4 cut(s) 190, 222, 375, 704
SfaNI GCATC 3 cut(s) 70, 500, 1012
SfcI CTRYAG 1 cut(s) 540
Sfr303I CCGCGG 1 cut(s) 214
SgrBI CCGCGG 1 cut(s) 214
SinI GGWCC 3 cut(s) 198, 746, 890
SmiMI CAYNNNNRTG 2 cut(s) 669, 696
SmlI CTYRAG 2 cut(s) 278, 1053
SmoI CTYRAG 2 cut(s) 278, 1053
SsiI CCGC 8 cut(s) 27, 30, 72, 83, 211, 213, 231, 299
SspMI CTAG 3 cut(s) 534, 566, 1032
StyD4I CCNGG 4 cut(s) 188, 220, 373, 702
StyI CCWWGG 2 cut(s) 337, 838
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 4 cut(s) 45, 267, 795, 1084
TaqII GACCGA 1 cut(s) 168
TauI GCSGC 3 cut(s) 32, 86, 234
TfiI GAWTC 3 cut(s) 42, 156, 1090
Tru1I TTAA 4 cut(s) 258, 279, 981, 1127
Tru9I TTAA 4 cut(s) 258, 279, 981, 1127
TscAI CASTG 2 cut(s) 410, 836
TseI GCWGC 4 cut(s) 86, 944, 1025, 1028
TspDTI ATGAA 6 cut(s) 519, 603, 639, 702, 1103, 1151
TspGWI ACGGA 1 cut(s) 620
TspRI CASTG 2 cut(s) 410, 836
Van91I CCANNNNNTGG 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 278
VpaK11BI GGWCC 3 cut(s) 198, 746, 890
XapI RAATTY 4 cut(s) 216, 801, 896, 905
XbaI TCTAGA 2 cut(s) 533, 565
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmiI GTMKAC 2 cut(s) 572, 1036
XspI CTAG 3 cut(s) 534, 566, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.