AT3G09330

amino acid transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
2864682 .. 2867357
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09330.1

Sequence Viewer

Length: 1575 bp
ATGGAACTTGAGGAGCAAGAAAGAGACATATTGTTTCCGACAGATGACGAGGAATGCCAAGTTGATGTCTCCTGCGATGACGAAGACGATGATTCTAGTTCATATTCTTCATTATCTCAGAACGATTCAGCTCCATGGCCTCGGAGTTATCGACAATCTGTGGATATCTTGACCGGAGTTACACCTCCTACAATCAGTTTCATTCACCGGAGAAGTTCTCAGACATCATTCACCAGTTCTGTCGCTTCCTTATACAAGAGACGTCCAACCTCTATTGCAAATTCGTTTGCGTCTTCCACAAGCAAACAACCGCTGCTCTCTGAGAAAGACGATGTATTATTCCTTTCATCTCAGATCGGGTTATCCAACACCGATCTCTCGTATGGAGAACCAAATTTCTGCTCGTTTCCTCAATCTGTTCTAAATGGAATCAATGTCCTTTGTGGAATAAGTCTACTCACAATGCCTTACGCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTCTTATCCTTTGCTATCATCACTTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTTCTGATCTCCGTACCTACCCGGACATTGGTCAAGCTGCCTTTGGATTTACCGGCCGCCTCATCATCTCCATACTTTTGTACATGGAGTTATACGTATGTTGTGTGGAGTATATAATCATGATGAGCGATAATTTATCGAGAGTTTTCCCCAACATTACATTAAACATCGTTGGAGTATCTCTAGATTCTCCTCAGATCTTTGCTATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTTACTCTCCTATCTCTCAGCCGGAGGAGTCTTTGTTTCGATCTTGCTTGCTCTTTGTCTCTTCTGGGTTGGGTCGGTTGATGGAGTCGGGTTTCACACGGGTGGAAAATCTCTTGATCTCGCTAACTTACCCGTCGCTATTGGGATATTCGGGTTTGGGTTCAGTGGTCACGCAGTTTTACCCAGCATTTACTCTTCCATGAAAGAACCATCCAAGTTTCCTTTGGTGCTTCTCATTAGTTTTGGTTTCTGCGTATTCTTTTACATTGTCGTAGCGATTTGCGGCTACAGTATGTTTGGTGAGGCCATTCAATCACAGTTTACACTAAACATGCCACAGCAGTACACAGCATCTAAAATCGCAGTTTGGACAGCGGTGGTAGTACCGATGACCAAATACGCGTTAGCTCTCACACCAATTGTGCTAGGTCTAGAAGAACTTATGCTGCCATCAGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCGCGATCATGGGGGCTTTGATGGGATCATTCCTCGCAATGCTTGTCGATTTTATCTTTCCTTGTCTTTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCAAATTGGAATATGCGTATTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTACTCCGCCATTGGAAGATTAGTAGGAAAACTGGATTGA

Protein Analysis

524

Amino Acids

57.07

Weight (kDa)

4.88

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 135 - 513 9.4e-64 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011681)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 265
AccI GTMKAC 2 cut(s) 454, 505
AccII CGCG 3 cut(s) 473, 1229, 1373
AciI CCGC 8 cut(s) 311, 473, 628, 1110, 1202, 1521, 1530, 1542
AclWI GGATC 1 cut(s) 1402
AcoI YGGCCR 1 cut(s) 625
AcsI RAATTY 2 cut(s) 280, 394
AcyI GRCGYC 1 cut(s) 262
AfaI GTAC 5 cut(s) 586, 653, 1172, 1212, 1538
AfiI CCNNNNNNNGG 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 1227
AgeI ACCGGT 1 cut(s) 539
AgsI TTSAA 2 cut(s) 1139, 1456
AleI CACNNNNGTG 1 cut(s) 927
AluBI AGCT 6 cut(s) 131, 570, 608, 785, 828, 1235
AluI AGCT 6 cut(s) 131, 570, 608, 785, 828, 1235
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 4 cut(s) 18, 73, 253, 890
AlwI GGATC 1 cut(s) 1402
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 3 cut(s) 137, 625, 1131
ApeKI GCWGC 4 cut(s) 313, 608, 1273, 1527
ApoI RAATTY 2 cut(s) 280, 394
AsiGI ACCGGT 1 cut(s) 539
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 4 cut(s) 197, 223, 487, 1139
AvaI CYCGRG 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 526, 559
BanII GRGCYC 1 cut(s) 572
BbsI GAAGAC 2 cut(s) 90, 285
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 4 cut(s) 300, 595, 1260, 1514
BccI CCATC 5 cut(s) 483, 902, 1045, 1285, 1384
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 4 cut(s) 18, 73, 253, 890
BfaI CTAG 4 cut(s) 96, 755, 1253, 1259
BfmI CTRYAG 2 cut(s) 804, 1114
BfuI GTATCC 1 cut(s) 554
BglII AGATCT 1 cut(s) 768
BisI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
BlsI GCNGC 6 cut(s) 315, 610, 629, 1112, 1275, 1529
Bme1390I CCNGG 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 1 cut(s) 1187
BoxI GACNNNNGTC 1 cut(s) 600
BpiI GAAGAC 2 cut(s) 90, 285
BplI GAGNNNNNCTC 6 cut(s) 202, 234, 477, 509, 1459, 1491
Bpu10I CCTNAGC 1 cut(s) 824
BpuEI CTTGAG 2 cut(s) 29, 584
BpuMI CCSGG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 2 cut(s) 134, 140
BsaWI WCCGGW 3 cut(s) 173, 207, 539
BsaXI ACNNNNNCTCC 2 cut(s) 846, 876
Bsc4I CCNNNNNNNGG 1 cut(s) 599
Bse118I RCCGGY 2 cut(s) 539, 623
Bse1I ACTGG 2 cut(s) 234, 1572
Bse3DI GCAATG 1 cut(s) 1413
BseDI CCNNGG 2 cut(s) 134, 140
BseGI GGATG 2 cut(s) 494, 1037
BseLI CCNNNNNNNGG 1 cut(s) 599
BseMI GCAATG 1 cut(s) 1413
BseMII CTCAG 7 cut(s) 131, 233, 312, 365, 779, 858, 1459
BseNI ACTGG 2 cut(s) 234, 1572
BseRI GAGGAG 4 cut(s) 26, 539, 753, 867
BseX3I CGGCCG 1 cut(s) 625
BseXI GCAGC 4 cut(s) 300, 595, 1260, 1514
BseYI CCCAGC 1 cut(s) 1010
Bsh1236I CGCG 3 cut(s) 473, 1229, 1373
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 3 cut(s) 139, 627, 1133
BshTI ACCGGT 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 1 cut(s) 572
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 6 cut(s) 174, 208, 540, 593, 624, 849
BslFI GGGAC 1 cut(s) 1546
BslI CCNNNNNNNGG 1 cut(s) 599
BsmAI GTCTC 4 cut(s) 18, 73, 253, 890
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 1546
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 3 cut(s) 139, 627, 1133
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 651
Bsp143I GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
Bsp19I CCATGG 1 cut(s) 134
Bsp68I TCGCGA 1 cut(s) 1373
BspACI CCGC 8 cut(s) 311, 473, 628, 1110, 1202, 1521, 1530, 1542
BspANI GGCC 3 cut(s) 139, 627, 1133
BspCNI CTCAG 7 cut(s) 130, 232, 313, 364, 778, 857, 1458
BspFNI CGCG 3 cut(s) 473, 1229, 1373
BspHI TCATGA 1 cut(s) 690
BspPI GGATC 1 cut(s) 1402
BspQI GCTCTTC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 1413
BsrFI RCCGGY 2 cut(s) 539, 623
BsrGI TGTACA 1 cut(s) 651
BsrI ACTGG 2 cut(s) 234, 1572
BssAI RCCGGY 2 cut(s) 539, 623
BssECI CCNNGG 2 cut(s) 134, 140
BssMI GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
BssNAI GTATAC 1 cut(s) 506
BssNI GRCGYC 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 134
Bst1107I GTATAC 1 cut(s) 506
Bst4CI ACNGT 3 cut(s) 808, 1118, 1146
Bst6I CTCTTC 3 cut(s) 577, 893, 1027
BstACI GRCGYC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 651
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 876
BstDEI CTNAG 8 cut(s) 117, 219, 321, 351, 765, 824, 844, 1445
BstDSI CCRYGG 1 cut(s) 134
BstF5I GGATG 2 cut(s) 494, 1037
BstFNI CGCG 3 cut(s) 473, 1229, 1373
BstKTI GATC 9 cut(s) 357, 376, 580, 771, 870, 946, 1295, 1377, 1397
BstMAI GTCTC 4 cut(s) 18, 73, 253, 890
BstMBI GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 3 cut(s) 782, 1518, 1527
BstNSI RCATGY 1 cut(s) 1162
BstPAI GACNNNNGTC 1 cut(s) 600
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 2 cut(s) 804, 1114
BstSNI TACGTA 1 cut(s) 667
BstUI CGCG 3 cut(s) 473, 1229, 1373
BstV1I GCAGC 4 cut(s) 300, 595, 1260, 1514
BstV2I GAAGAC 2 cut(s) 90, 285
BstX2I RGATCY 1 cut(s) 768
BstYI RGATCY 1 cut(s) 768
BstZ17I GTATAC 1 cut(s) 506
BstZI CGGCCG 1 cut(s) 625
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 3 cut(s) 139, 627, 1133
BtgI CCRYGG 1 cut(s) 134
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 494, 1037
BtsIMutI CAGTG 1 cut(s) 997
BtuMI TCGCGA 1 cut(s) 1373
Cac8I GCNNGC 1 cut(s) 876
CciI TCATGA 1 cut(s) 690
Cfr10I RCCGGY 2 cut(s) 539, 623
CseI GACGC 1 cut(s) 279
Csp6I GTAC 5 cut(s) 585, 652, 1171, 1211, 1537
CspAI ACCGGT 1 cut(s) 539
CviAII CATG 6 cut(s) 135, 655, 691, 1027, 1159, 1378
CviQI GTAC 5 cut(s) 585, 652, 1171, 1211, 1537
DdeI CTNAG 8 cut(s) 117, 219, 321, 351, 765, 824, 844, 1445
DpnI GATC 9 cut(s) 356, 375, 579, 770, 869, 945, 1294, 1376, 1396
DpnII GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
EaeI YGGCCR 1 cut(s) 625
EagI CGGCCG 1 cut(s) 625
Eam1104I CTCTTC 3 cut(s) 577, 893, 1027
EarI CTCTTC 3 cut(s) 577, 893, 1027
EciI GGCGGA 1 cut(s) 1531
Ecl136II GAGCTC 1 cut(s) 570
EclXI CGGCCG 1 cut(s) 625
Eco105I TACGTA 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 572
Eco32I GATATC 1 cut(s) 166
Eco52I CGGCCG 1 cut(s) 625
Eco53kI GAGCTC 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 570
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 134
EcoT38I GRGCYC 1 cut(s) 572
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 6 cut(s) 138, 658, 694, 1030, 1162, 1381
FaqI GGGAC 1 cut(s) 1546
FatI CATG 6 cut(s) 134, 654, 690, 1026, 1158, 1377
FauI CCCGC 1 cut(s) 1523
FblI GTMKAC 2 cut(s) 454, 505
Fnu4HI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
FokI GGATG 2 cut(s) 501, 1024
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
FspBI CTAG 4 cut(s) 96, 755, 1253, 1259
GluI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
GsaI CCCAGC 1 cut(s) 1014
HaeIII GGCC 3 cut(s) 139, 627, 1133
HapII CCGG 6 cut(s) 174, 208, 540, 593, 624, 849
HgaI GACGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 6 cut(s) 138, 658, 694, 1030, 1162, 1381
HinfI GANTC 7 cut(s) 92, 125, 429, 758, 855, 912, 1474
HpaII CCGG 6 cut(s) 174, 208, 540, 593, 624, 849
HphI GGTGA 4 cut(s) 197, 223, 487, 1139
Hpy166II GTNNAC 4 cut(s) 455, 506, 1149, 1173
Hpy188I TCNGA 9 cut(s) 39, 120, 144, 222, 322, 354, 577, 768, 1282
Hpy188III TCNNGA 9 cut(s) 169, 563, 691, 711, 755, 941, 1259, 1372, 1453
Hpy8I GTNNAC 4 cut(s) 455, 506, 1149, 1173
Hpy99I CGWCG 1 cut(s) 965
HpyAV CCTTC 2 cut(s) 476, 1450
HpyCH4III ACNGT 3 cut(s) 808, 1118, 1146
HpyCH4IV ACGT 3 cut(s) 262, 666, 1535
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 782, 1518, 1527
HpyF3I CTNAG 8 cut(s) 117, 219, 321, 351, 765, 824, 844, 1445
HpySE526I ACGT 3 cut(s) 262, 666, 1535
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 6 cut(s) 138, 658, 694, 1030, 1162, 1381
Kzo9I GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 2 cut(s) 13, 136
Lsp1109I GCAGC 4 cut(s) 300, 595, 1260, 1514
LweI GCATC 1 cut(s) 1187
MaeI CTAG 4 cut(s) 96, 755, 1253, 1259
MaeII ACGT 3 cut(s) 262, 666, 1535
MaeIII GTNAC 2 cut(s) 178, 995
MalI GATC 9 cut(s) 356, 375, 579, 770, 869, 945, 1294, 1376, 1396
MboI GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
MfeI CAATTG 1 cut(s) 1245
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 5 cut(s) 280, 394, 703, 1245, 1479
MluI ACGCGT 1 cut(s) 1227
MlyI GAGTC 3 cut(s) 864, 921, 1468
MmeI TCCRAC 4 cut(s) 62, 290, 390, 724
MseI TTAA 2 cut(s) 734, 1317
MslI CAYNNNNRTG 1 cut(s) 927
MspA1I CMGCKG 2 cut(s) 313, 1202
MspI CCGG 6 cut(s) 174, 208, 540, 593, 624, 849
MspR9I CCNGG 1 cut(s) 593
MunI CAATTG 1 cut(s) 1245
Mva1269I GAATGC 1 cut(s) 59
MvnI CGCG 3 cut(s) 473, 1229, 1373
MwoI GCNNNNNNNGC 3 cut(s) 782, 1518, 1527
NciI CCSGG 1 cut(s) 593
NcoI CCATGG 1 cut(s) 134
NdeII GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
NlaIII CATG 6 cut(s) 138, 658, 694, 1030, 1162, 1381
NmuCI GTSAC 1 cut(s) 995
NruI TCGCGA 1 cut(s) 1373
NspI RCATGY 1 cut(s) 1162
OliI CACNNNNGTG 1 cut(s) 927
PagI TCATGA 1 cut(s) 690
PciSI GCTCTTC 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 148
PctI GAATGC 1 cut(s) 59
PfeI GAWTC 4 cut(s) 92, 125, 429, 758
PinAI ACCGGT 1 cut(s) 539
PkrI GCNGC 6 cut(s) 315, 610, 629, 1112, 1275, 1529
PleI GAGTC 3 cut(s) 863, 920, 1468
PpsI GAGTC 3 cut(s) 863, 920, 1468
Ppu21I YACGTR 1 cut(s) 667
PshAI GACNNNNGTC 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 1010
PsuI RGATCY 1 cut(s) 768
RruI TCGCGA 1 cut(s) 1373
RsaI GTAC 5 cut(s) 586, 653, 1172, 1212, 1538
RsaNI GTAC 5 cut(s) 585, 652, 1171, 1211, 1537
RseI CAYNNNNRTG 1 cut(s) 927
SacI GAGCTC 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 577
SaqAI TTAA 2 cut(s) 734, 1317
SatI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
Sau3AI GATC 9 cut(s) 354, 373, 577, 768, 867, 943, 1292, 1374, 1394
SchI GAGTC 3 cut(s) 864, 921, 1468
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 1 cut(s) 1187
SfcI CTRYAG 2 cut(s) 804, 1114
SmiMI CAYNNNNRTG 1 cut(s) 927
SmlI CTYRAG 2 cut(s) 8, 563
SmoI CTYRAG 2 cut(s) 8, 563
SnaBI TACGTA 1 cut(s) 667
Sse9I AATT 5 cut(s) 280, 394, 703, 1245, 1479
SsiI CCGC 8 cut(s) 311, 473, 628, 1110, 1202, 1521, 1530, 1542
SspMI CTAG 4 cut(s) 96, 755, 1253, 1259
SstI GAGCTC 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 3 cut(s) 808, 1118, 1146
TaiI ACGT 3 cut(s) 265, 669, 1538
TaqI TCGA 4 cut(s) 151, 710, 866, 1416
TasI AATT 5 cut(s) 280, 394, 703, 1245, 1479
TatI WGTACW 2 cut(s) 651, 1170
TauI GCSGC 2 cut(s) 630, 1113
TfiI GAWTC 4 cut(s) 92, 125, 429, 758
Tru1I TTAA 2 cut(s) 734, 1317
Tru9I TTAA 2 cut(s) 734, 1317
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 4 cut(s) 313, 608, 1273, 1527
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 6 cut(s) 90, 99, 190, 336, 1043, 1486
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 1 cut(s) 997
XapI RAATTY 2 cut(s) 280, 394
XbaI TCTAGA 2 cut(s) 754, 1258
XceI RCATGY 1 cut(s) 1162
XcmI CCANNNNNNNNNTGG 1 cut(s) 1048
XmiI GTMKAC 2 cut(s) 454, 505
XspI CTAG 4 cut(s) 96, 755, 1253, 1259
ZraI GACGTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.