FvH4_6g13370

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011681
Physical Location & Seq
Forward (+)
8125902 .. 8129712
3811 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13370.t2

Sequence Viewer

Length: 1449 bp
ATGGCCTCAGAGCTACTGGTATGGCAGTCCATGGATATGTACACCAATGTCATGACTCCTAGTTCCCTTCCCTCCTTTATAAAACAAGGGGCGAGTTTCAGCTCCTTGCCTCCGTCCGCTAAATGGCAACCTGATAATAATTCTTCACAGCTGATCAGTAGCAGATTACTTGCCTCCGAAGCAAGTTTAGAAAAAGAAGGACTTGCGGTCTCAACTCCCCCAGCTCTCTCCGCAAGAAATTCTGTCGCTGAATTGCCACCACCGAAGGAACATAGTTGTTCATTTTCACAAGCTGTACTCAATGGAATCAATCTCTTGTGTGGGATGGGACTTCTTACCACACCATATGCAATAAAAGAAGGAGGATGGTTGAGCCTCATTGTGCTTGCATTGTTTAGTGTGATATGTTGCTATACTGGAATTTTATTAATGCGATGCTTAGAAAGCTATCCTGGACTCCGGACCTATCCAGATATTGGTCAGGCTGCTTTTGGCTATACTGGCCGTTTATTCCTATCTATAATTTTGTATCTAGAACTATATGGTGCTTGTGTGGAGTTTTTGACGTTGATGGGCGATAACATAGCAGCATTATTCCCAAACGCACACATGGCATTTGCAGGAATCCATCTTGATAGTCATGAAATTTTTGTCATCACAGCAACTCTTGTAGTTCTTCCAACTGTATGGCTTCGAAATCTCAGTTTGCTCTCTTACCTTTCAGTTGGAGGAGTGGCTACTACGATTTTTGTGGCCATTTTAATGGTATGGGTTGGGGCTGTGAACCAAGTTGGCTTTCATCACAGAGGATCCGCCTTAAACCTTTCAGGGTTACCTGTCACAGTTGGTATATATGGTTTCTGCTACGCCGGTCATTCAGTATTCCCAAATATCTACACATCCATGAGAAATCCATCTCAATTTCCAGCAGCTCTAATGGCCAGTATGGCATTTTGCTTGTTCATGTATACTACGGTAGCAATATGTGGCTATCTAATGTTTGGAGACTCGATCAAGTCTCAGTTCACTCTAAACATGCCCGAAGAATTTGTTGCTTCAAAAATTGCAATCTGGACAACAGTTTTGAACACAATGACAAAGTTTGCCATCACAATAACGCCCGTGGCTCTGAGTGTAGAGGAACTCTTTCCGAAAGCTTTGATGGGATCTCATTTTGCTTGTATCCTCACAAGAACAGTGCTAGTCGCATCAACATTGGTCGTTGCATTGAGCTTTCCATTCTTTGGTTCGGTGATGGCATTGATGGGATCCTTACTTGCAATGCTAGTGGCTATCATCTTCCCATGCATCTGTAATCTCATCCTACACAAAGGTAGATTAACTAACTGGCAGATTACATCTTGCATTCTCATTATAATGGTGGGGGTGACATGCTCTATTATTGGCACATATTCATCAGTAACAAAAATAGCTAACGCAATGGAGTAA

Protein Analysis

483

Amino Acids

52.06

Weight (kDa)

6.74

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 161 - 541 1.8e-66 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09330 AT3G09340 AT5G02170 AT5G02170 AT5G02180 AT5G02180
fragaria_vesca FvH4_6g13370 FvH4_6g13370
malus_domestica MD12G1144700.v1.1
prunus_persica Prupe.6G258200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466251
rosa_laevigata RLG00000024593
rosa_multiflora Rmu_sc0000350.1_g000014 Rmu_sc0022084.1_g000006
rosa_roxburghii Rroxscaffold_6G00414690
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG148000 Rh3DG148700
rosa_wichuraiana Rw3G011960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 80, 1376
AccB7I CCANNNNNTGG 2 cut(s) 476, 1244
AccI GTMKAC 1 cut(s) 968
AccIII TCCGGA 1 cut(s) 459
AciI CCGC 4 cut(s) 117, 206, 231, 813
AclWI GGATC 5 cut(s) 804, 817, 1174, 1263, 1276
AcoI YGGCCR 3 cut(s) 502, 753, 939
AcsI RAATTY 4 cut(s) 238, 420, 645, 1046
AfaI GTAC 2 cut(s) 41, 297
AfiI CCNNNNNNNGG 3 cut(s) 123, 476, 1244
AgsI TTSAA 2 cut(s) 1059, 1087
AhdI GACNNNNNGTC 1 cut(s) 206
AjnI CCWGG 1 cut(s) 451
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
Alw26I GTCTC 3 cut(s) 214, 999, 1023
AlwI GGATC 5 cut(s) 804, 817, 1174, 1263, 1276
Aor13HI TCCGGA 1 cut(s) 459
AoxI GGCC 4 cut(s) 3, 502, 753, 939
ApeKI GCWGC 3 cut(s) 485, 587, 929
ApoI RAATTY 4 cut(s) 238, 420, 645, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 1066, 1098
AseI ATTAAT 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 1146
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 1264, 1399
AsuII TTCGAA 1 cut(s) 694
AvaII GGWCC 1 cut(s) 462
BalI TGGCCA 2 cut(s) 755, 941
BamHI GGATCC 2 cut(s) 809, 1268
BbvI GCAGC 3 cut(s) 472, 599, 941
BccI CCATC 9 cut(s) 319, 360, 565, 636, 922, 1115, 1156, 1249, 1258
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 1 cut(s) 453
BciVI GTATCC 1 cut(s) 1193
BclI TGATCA 1 cut(s) 153
BcoDI GTCTC 3 cut(s) 214, 999, 1023
BfaI CTAG 4 cut(s) 60, 533, 1202, 1286
BfuI GTATCC 1 cut(s) 1193
BglI GCCNNNNNGGC 1 cut(s) 947
BisI GCNGC 3 cut(s) 486, 588, 930
BlsI GCNGC 3 cut(s) 487, 589, 931
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 462
BmeRI GACNNNNNGTC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 2 cut(s) 811, 1270
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 3 cut(s) 425, 1217, 1317
Bpu14I TTCGAA 1 cut(s) 694
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 30, 1122
BsaWI WCCGGW 1 cut(s) 459
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 476, 1244
Bse118I RCCGGY 1 cut(s) 869
Bse1I ACTGG 5 cut(s) 21, 421, 505, 942, 1352
Bse3DI GCAATG 2 cut(s) 1287, 1446
BseAI TCCGGA 1 cut(s) 459
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 30, 1122
BseGI GGATG 4 cut(s) 330, 371, 899, 1320
BseLI CCNNNNNNNGG 3 cut(s) 123, 476, 1244
BseMI GCAATG 2 cut(s) 1287, 1446
BseMII CTCAG 4 cut(s) 21, 715, 1034, 1121
BseNI ACTGG 5 cut(s) 21, 421, 505, 942, 1352
BseRI GAGGAG 1 cut(s) 744
BseXI GCAGC 3 cut(s) 472, 599, 941
BseYI CCCAGC 1 cut(s) 220
BshFI GGCC 4 cut(s) 5, 504, 755, 941
BsiSI CCGG 2 cut(s) 460, 870
BslFI GGGAC 1 cut(s) 342
BslI CCNNNNNNNGG 3 cut(s) 123, 476, 1244
BsmAI GTCTC 3 cut(s) 214, 999, 1023
BsmFI GGGAC 1 cut(s) 342
BsmI GAATGC 1 cut(s) 1365
BsnI GGCC 4 cut(s) 5, 504, 755, 941
Bso31I GGTCTC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 694
Bsp13I TCCGGA 1 cut(s) 459
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 5 cut(s) 153, 809, 1011, 1166, 1268
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 4 cut(s) 117, 206, 231, 813
BspANI GGCC 4 cut(s) 5, 504, 755, 941
BspCNI CTCAG 4 cut(s) 20, 714, 1033, 1122
BspEI TCCGGA 1 cut(s) 459
BspHI TCATGA 2 cut(s) 51, 640
BspLI GGNNCC 2 cut(s) 811, 1270
BspPI GGATC 5 cut(s) 804, 817, 1174, 1263, 1276
BspT104I TTCGAA 1 cut(s) 694
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 2 cut(s) 1287, 1446
BsrFI RCCGGY 1 cut(s) 869
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 5 cut(s) 21, 421, 505, 942, 1352
BssAI RCCGGY 1 cut(s) 869
BssECI CCNNGG 2 cut(s) 30, 1122
BssMI GATC 5 cut(s) 153, 809, 1011, 1166, 1268
BssNAI GTATAC 1 cut(s) 969
BssT1I CCWWGG 1 cut(s) 30
Bst1107I GTATAC 1 cut(s) 969
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 5 cut(s) 685, 844, 976, 1081, 1198
BstAUI TGTACA 1 cut(s) 39
BstBI TTCGAA 1 cut(s) 694
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 5 cut(s) 7, 439, 701, 1020, 1130
BstDSI CCRYGG 2 cut(s) 30, 1122
BstEII GGTNACC 1 cut(s) 831
BstF5I GGATG 4 cut(s) 330, 371, 899, 1320
BstKTI GATC 5 cut(s) 156, 812, 1014, 1169, 1271
BstMAI GTCTC 3 cut(s) 214, 999, 1023
BstMBI GATC 5 cut(s) 153, 809, 1011, 1166, 1268
BstMWI GCNNNNNNNGC 7 cut(s) 179, 230, 444, 501, 611, 938, 947
BstNI CCWGG 1 cut(s) 453
BstNSI RCATGY 2 cut(s) 1039, 1395
BstPI GGTNACC 1 cut(s) 831
BstSCI CCNGG 1 cut(s) 451
BstV1I GCAGC 3 cut(s) 472, 599, 941
BstX2I RGATCY 3 cut(s) 809, 1166, 1268
BstXI CCANNNNNNTGG 2 cut(s) 687, 763
BstYI RGATCY 3 cut(s) 809, 1166, 1268
BstZ17I GTATAC 1 cut(s) 969
BsuI GTATCC 1 cut(s) 1193
BsuRI GGCC 4 cut(s) 5, 504, 755, 941
BtgI CCRYGG 2 cut(s) 30, 1122
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 4 cut(s) 330, 371, 899, 1320
BtsIMutI CAGTG 1 cut(s) 1203
Cac8I GCNNGC 1 cut(s) 387
CciI TCATGA 2 cut(s) 51, 640
Cfr10I RCCGGY 1 cut(s) 869
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 2 cut(s) 40, 296
CspCI CAANNNNNGTGG 2 cut(s) 1269, 1304
CviAII CATG 9 cut(s) 31, 52, 610, 641, 904, 964, 1036, 1305, 1392
CviQI GTAC 2 cut(s) 40, 296
DdeI CTNAG 5 cut(s) 7, 439, 701, 1020, 1130
DpnI GATC 5 cut(s) 155, 811, 1013, 1168, 1270
DpnII GATC 5 cut(s) 153, 809, 1011, 1166, 1268
DriI GACNNNNNGTC 1 cut(s) 206
EaeI YGGCCR 3 cut(s) 502, 753, 939
Eam1105I GACNNNNNGTC 1 cut(s) 206
EciI GGCGGA 1 cut(s) 802
Eco130I CCWWGG 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 462
Eco91I GGTNACC 1 cut(s) 831
EcoO65I GGTNACC 1 cut(s) 831
EcoRII CCWGG 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 1 cut(s) 1310
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 9 cut(s) 34, 55, 613, 644, 907, 967, 1039, 1308, 1395
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FaqI GGGAC 1 cut(s) 342
FatI CATG 9 cut(s) 30, 51, 609, 640, 903, 963, 1035, 1304, 1391
FauNDI CATATG 1 cut(s) 346
FbaI TGATCA 1 cut(s) 153
FblI GTMKAC 1 cut(s) 968
Fnu4HI GCNGC 3 cut(s) 486, 588, 930
FokI GGATG 4 cut(s) 337, 378, 886, 1307
Fsp4HI GCNGC 3 cut(s) 486, 588, 930
FspBI CTAG 4 cut(s) 60, 533, 1202, 1286
GluI GCNGC 3 cut(s) 486, 588, 930
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 4 cut(s) 5, 504, 755, 941
HapII CCGG 2 cut(s) 460, 870
Hin1II CATG 9 cut(s) 34, 55, 613, 644, 907, 967, 1039, 1308, 1395
HindIII AAGCTT 1 cut(s) 1155
HinfI GANTC 5 cut(s) 55, 306, 456, 624, 1007
HpaII CCGG 2 cut(s) 460, 870
HphI GGTGA 2 cut(s) 1264, 1399
Hpy166II GTNNAC 4 cut(s) 42, 784, 969, 1026
Hpy188I TCNGA 4 cut(s) 10, 178, 1131, 1152
Hpy188III TCNNGA 7 cut(s) 52, 460, 470, 533, 632, 641, 1072
Hpy8I GTNNAC 4 cut(s) 42, 784, 969, 1026
HpyAV CCTTC 4 cut(s) 77, 191, 259, 353
HpyCH4III ACNGT 5 cut(s) 685, 844, 976, 1081, 1198
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 8 cut(s) 350, 389, 620, 1067, 1226, 1280, 1308, 1365
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 230, 444, 501, 611, 938, 947
HpyF3I CTNAG 5 cut(s) 7, 439, 701, 1020, 1130
HpySE526I ACGT 1 cut(s) 566
Hsp92II CATG 9 cut(s) 34, 55, 613, 644, 907, 967, 1039, 1308, 1395
Kpn2I TCCGGA 1 cut(s) 459
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 5 cut(s) 153, 809, 1011, 1166, 1268
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 3 cut(s) 472, 599, 941
LweI GCATC 3 cut(s) 425, 1217, 1317
MaeI CTAG 4 cut(s) 60, 533, 1202, 1286
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 4 cut(s) 831, 838, 1387, 1420
MalI GATC 5 cut(s) 155, 811, 1013, 1168, 1270
MboI GATC 5 cut(s) 153, 809, 1011, 1166, 1268
MboII GAAGA 4 cut(s) 135, 668, 1055, 1291
MflI RGATCY 3 cut(s) 809, 1166, 1268
MlsI TGGCCA 2 cut(s) 755, 941
MluCI AATT 9 cut(s) 139, 238, 251, 420, 522, 645, 920, 1046, 1062
MluNI TGGCCA 2 cut(s) 755, 941
MlyI GAGTC 3 cut(s) 49, 450, 1001
MmeI TCCRAC 2 cut(s) 704, 706
Mox20I TGGCCA 2 cut(s) 755, 941
Mph1103I ATGCAT 1 cut(s) 1310
MroI TCCGGA 1 cut(s) 459
MroXI GAANNNNTTC 1 cut(s) 1146
MscI TGGCCA 2 cut(s) 755, 941
MseI TTAA 4 cut(s) 428, 761, 818, 1340
MslI CAYNNNNRTG 4 cut(s) 35, 761, 902, 1376
Msp20I TGGCCA 2 cut(s) 755, 941
MspA1I CMGCKG 1 cut(s) 151
MspI CCGG 2 cut(s) 460, 870
MspR9I CCNGG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 1365
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 7 cut(s) 179, 230, 444, 501, 611, 938, 947
NcoI CCATGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 346
NdeII GATC 5 cut(s) 153, 809, 1011, 1166, 1268
NlaIII CATG 9 cut(s) 34, 55, 613, 644, 907, 967, 1039, 1308, 1395
NlaIV GGNNCC 2 cut(s) 811, 1270
NmuCI GTSAC 2 cut(s) 838, 1387
NsiI ATGCAT 1 cut(s) 1310
NspI RCATGY 2 cut(s) 1039, 1395
NspV TTCGAA 1 cut(s) 694
PagI TCATGA 2 cut(s) 51, 640
PctI GAATGC 1 cut(s) 1365
PdmI GAANNNNTTC 1 cut(s) 1146
PfeI GAWTC 2 cut(s) 306, 624
PflMI CCANNNNNTGG 2 cut(s) 476, 1244
PfoI TCCNGGA 1 cut(s) 451
PkrI GCNGC 3 cut(s) 487, 589, 931
PleI GAGTC 3 cut(s) 49, 450, 1001
PpsI GAGTC 3 cut(s) 49, 450, 1001
PshBI ATTAAT 1 cut(s) 428
PsiI TTATAA 2 cut(s) 80, 1376
Psp6I CCWGG 1 cut(s) 451
PspEI GGTNACC 1 cut(s) 831
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 811, 1270
PspPI GGNCC 1 cut(s) 462
PsuI RGATCY 3 cut(s) 809, 1166, 1268
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 2 cut(s) 41, 297
RsaNI GTAC 2 cut(s) 40, 296
RseI CAYNNNNRTG 4 cut(s) 35, 761, 902, 1376
SaqAI TTAA 4 cut(s) 428, 761, 818, 1340
SatI GCNGC 3 cut(s) 486, 588, 930
Sau3AI GATC 5 cut(s) 153, 809, 1011, 1166, 1268
Sau96I GGNCC 1 cut(s) 462
SchI GAGTC 3 cut(s) 49, 450, 1001
ScrFI CCNGG 1 cut(s) 453
SfaNI GCATC 3 cut(s) 425, 1217, 1317
SfuI TTCGAA 1 cut(s) 694
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 4 cut(s) 35, 761, 902, 1376
Sse9I AATT 9 cut(s) 139, 238, 251, 420, 522, 645, 920, 1046, 1062
SsiI CCGC 4 cut(s) 117, 206, 231, 813
SspMI CTAG 4 cut(s) 60, 533, 1202, 1286
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 5 cut(s) 685, 844, 976, 1081, 1198
TaiI ACGT 1 cut(s) 569
TaqI TCGA 2 cut(s) 694, 1010
TasI AATT 9 cut(s) 139, 238, 251, 420, 522, 645, 920, 1046, 1062
TatI WGTACW 2 cut(s) 39, 295
TfiI GAWTC 2 cut(s) 306, 624
Tru1I TTAA 4 cut(s) 428, 761, 818, 1340
Tru9I TTAA 4 cut(s) 428, 761, 818, 1340
TscAI CASTG 1 cut(s) 1203
TseFI GTSAC 2 cut(s) 838, 1387
TseI GCWGC 3 cut(s) 485, 587, 929
Tsp45I GTSAC 2 cut(s) 838, 1387
TspDTI ATGAA 5 cut(s) 270, 657, 788, 952, 1404
TspGWI ACGGA 1 cut(s) 102
TspRI CASTG 1 cut(s) 1203
Van91I CCANNNNNTGG 2 cut(s) 476, 1244
VpaK11BI GGWCC 1 cut(s) 462
VspI ATTAAT 1 cut(s) 428
XapI RAATTY 4 cut(s) 238, 420, 645, 1046
XbaI TCTAGA 1 cut(s) 532
XceI RCATGY 2 cut(s) 1039, 1395
XmiI GTMKAC 1 cut(s) 968
XmnI GAANNNNTTC 1 cut(s) 1146
XspI CTAG 4 cut(s) 60, 533, 1202, 1286
Zsp2I ATGCAT 1 cut(s) 1310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.