AT3G09340

amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011681
Physical Location & Seq
Reverse (-)
2867912 .. 2870600
2689 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09340.1

Sequence Viewer

Length: 1587 bp
ATGGATCTTGAGGAGCAAGAAAGGGACATATTGATTCAGACAGATGACGATGACTGCCATGTCGATGTCTCATATGTTAATGACGACGATGATTCCAATGCATCTTTTTCATTATCCCAGAATGATTCCGCTTTCTGGCCTCAGAGTTATAGACACTCTGTGGATCTCTTGACCGGAGTTACACCTCCTATGGTCAGTTTCATACAAGGGAGAAGTACTGAGACATCATTCAGTAGCTCCATCGCTTCCTTATACAAGAGACGTCCAACCTCTATTGCAAATTCGTTTGTGTCTTCCACAAGCAAACAACCGCTGCTCTCTGAGAAAGACGATGTATCATTCCTTTCATCTCAGGTCGGGTTATCCAACACCGATCTCTCGTATGGAGAACCAAATTTCTGCTCGTTTCCCCAATCTGTTCTAAATGGAATCAATGTCCTTTGTGGAATAAGTCTACTCACAATGCCTTACGCGGTGAAAGAAGGAGGATGGCTCGGGCTTTGTATACTCTTATCCTTTGCTATCATCACTTGCTACACCGGTATCCTCCTCAAACGATGTCTTGAGAGCTCTTCTGATCTCCGTACCTACCCGGACATTGGTCAAGCTGCCTTTGGATTTACAGGCCGCCTCATCATCTCCATACTTCTGTACATGGAGTTATACGTATGTTGTGTGGAGTATATAATCATGATGAGCGATAATTTATCGAGAGTTTTCCCCAACATTACATTAAACATCGTTGGAGTATCTCTAGATTCTCCTCAGATCTTTGCTATATCAGCTACTCTTATTGTTCTTCCTACAGTTTGGCTCAAAGACCTTAGCTTACTCTCCTATCTCTCAGCCGGAGGAGTCTTTGTTTCGATCTTGCTTGCTCTTTGTCTCTTCTGGGTTGGGTCGGTTGATGGAGTCGGGTTTCACACGGGTGGAAAAGCTCTTGATCTCGCTAACTTACCCGTCGCTATTGGGATATTCGGGTTTGGGTTCAGTGGTCACGCAGTTTTACCCAGCATTTACTCTTCCATGAAAGAACCATCCAAGTTTCCTTTGGTGCTTCTCATTAGTTTTGGTTTCTGCGTATTCTTTTACATTGCCGTGGCGATTTGCGGCTACAGTATGTTTGGTGAGGCCATTCAATCGCAGTTTACACTAAACATGCCACAACAGTACACAGCATCTAAAATCGCAGTTTGGACAGCGGTGGTAGTACCAATGACCAAATACGCGTTAGCTCTCACACCGATTGTGCTAGGTTTAGAAGAACTTATGCCGCCATCAGAGAAGATGAGATCGTATGGAGTATCTATCTTTATTAAAACGATTTTAGTTCTCTCTACTTTGGTTGTCGCACTTACATTCCCATTCTTCGCGATCATGGGGGCTTTGATGGGATCATTCCTCGCAACGCTTGTCGATTTTATCTTTCCTTGTCTTTGTTATCTCAGTATCTTGAAGGGTAGATTGAGTAAGACTCAAATTGGAATATGCGTTTTCATCATAATCTCTGGCATTGTAAGCGGTTGCTGCGGGACGTACTCCGCCATTGGAAGATTAGTAGGAGAATTGAATTGGATGGTACAATGA

Protein Analysis

528

Amino Acids

57.45

Weight (kDa)

4.76

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 135 - 513 2.2e-64 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011681)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09330 AT3G09340 AT5G02170 AT5G02170 AT5G02180 AT5G02180
fragaria_vesca FvH4_6g13370 FvH4_6g13370
malus_domestica MD12G1144700.v1.1
prunus_persica Prupe.6G258200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0466251
rosa_laevigata RLG00000024593
rosa_multiflora Rmu_sc0000350.1_g000014 Rmu_sc0022084.1_g000006
rosa_roxburghii Rroxscaffold_6G00414690
rosa_rugosa Rorug03G0080600
rosa_samantha Rh3BG148000 Rh3DG148700
rosa_wichuraiana Rw3G011960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AatII GACGTC 1 cut(s) 265
AccI GTMKAC 2 cut(s) 454, 505
AccII CGCG 3 cut(s) 473, 1229, 1373
AclWI GGATC 3 cut(s) 12, 171, 1402
AcsI RAATTY 2 cut(s) 280, 394
AcyI GRCGYC 1 cut(s) 262
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 7 cut(s) 217, 586, 653, 1172, 1212, 1538, 1581
AfiI CCNNNNNNNGG 2 cut(s) 135, 599
AflIII ACRYGT 1 cut(s) 1227
AgeI ACCGGT 1 cut(s) 539
AgsI TTSAA 3 cut(s) 1139, 1456, 1570
AleI CACNNNNGTG 1 cut(s) 927
AluBI AGCT 7 cut(s) 237, 570, 608, 785, 828, 938, 1235
AluI AGCT 7 cut(s) 237, 570, 608, 785, 828, 938, 1235
Alw21I GWGCWC 1 cut(s) 572
Alw26I GTCTC 4 cut(s) 73, 215, 253, 890
AlwI GGATC 3 cut(s) 12, 171, 1402
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 3 cut(s) 137, 625, 1131
ApeKI GCWGC 3 cut(s) 313, 608, 1527
ApoI RAATTY 2 cut(s) 280, 394
AsiGI ACCGGT 1 cut(s) 539
AsuC2I CCSGG 1 cut(s) 593
AsuHPI GGTGA 2 cut(s) 487, 1139
AvaI CYCGRG 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 526, 559
BanII GRGCYC 1 cut(s) 572
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 572
BbvI GCAGC 3 cut(s) 300, 595, 1514
BccI CCATC 7 cut(s) 248, 483, 902, 1045, 1285, 1384, 1570
BceAI ACGGC 1 cut(s) 1082
BciVI GTATCC 1 cut(s) 554
BcnI CCSGG 1 cut(s) 593
BcoDI GTCTC 4 cut(s) 73, 215, 253, 890
BfaI CTAG 2 cut(s) 755, 1253
BfmI CTRYAG 2 cut(s) 804, 1114
BfuI GTATCC 1 cut(s) 554
BglII AGATCT 1 cut(s) 768
BisI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
BlsI GCNGC 6 cut(s) 315, 610, 629, 1112, 1275, 1529
BmcAI AGTACT 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 593
BmeT110I CYCGRG 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 2 cut(s) 110, 1187
BoxI GACNNNNGTC 1 cut(s) 600
BpiI GAAGAC 1 cut(s) 285
BplI GAGNNNNNCTC 4 cut(s) 477, 509, 1459, 1491
Bpu10I CCTNAGC 1 cut(s) 824
BpuEI CTTGAG 2 cut(s) 29, 584
BpuMI CCSGG 1 cut(s) 593
BsaAI YACGTR 1 cut(s) 667
BsaHI GRCGYC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 1098
BsaWI WCCGGW 2 cut(s) 173, 539
BsaXI ACNNNNNCTCC 2 cut(s) 846, 876
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 599
Bse118I RCCGGY 1 cut(s) 539
Bse3DI GCAATG 1 cut(s) 1092
BseDI CCNNGG 1 cut(s) 1098
BseGI GGATG 3 cut(s) 494, 1037, 1581
BseLI CCNNNNNNNGG 2 cut(s) 135, 599
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 7 cut(s) 155, 210, 312, 365, 779, 858, 1459
BseRI GAGGAG 4 cut(s) 26, 539, 753, 867
BseXI GCAGC 3 cut(s) 300, 595, 1514
BseYI CCCAGC 1 cut(s) 1010
Bsh1236I CGCG 3 cut(s) 473, 1229, 1373
BshFI GGCC 3 cut(s) 139, 627, 1133
BshTI ACCGGT 1 cut(s) 539
BsiHKAI GWGCWC 1 cut(s) 572
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 4 cut(s) 174, 540, 593, 849
BslFI GGGAC 2 cut(s) 38, 1546
BslI CCNNNNNNNGG 2 cut(s) 135, 599
BsmAI GTCTC 4 cut(s) 73, 215, 253, 890
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 2 cut(s) 38, 1546
BsnI GGCC 3 cut(s) 139, 627, 1133
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 1 cut(s) 572
Bsp1407I TGTACA 1 cut(s) 651
Bsp68I TCGCGA 1 cut(s) 1373
BspANI GGCC 3 cut(s) 139, 627, 1133
BspCNI CTCAG 7 cut(s) 154, 211, 313, 364, 778, 857, 1458
BspFNI CGCG 3 cut(s) 473, 1229, 1373
BspHI TCATGA 1 cut(s) 690
BspPI GGATC 3 cut(s) 12, 171, 1402
BspQI GCTCTTC 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 1092
BsrFI RCCGGY 1 cut(s) 539
BsrGI TGTACA 1 cut(s) 651
BssAI RCCGGY 1 cut(s) 539
BssECI CCNNGG 1 cut(s) 1098
BssNAI GTATAC 1 cut(s) 506
BssNI GRCGYC 1 cut(s) 262
Bst1107I GTATAC 1 cut(s) 506
Bst4CI ACNGT 3 cut(s) 808, 1118, 1170
Bst6I CTCTTC 3 cut(s) 577, 893, 1027
BstACI GRCGYC 1 cut(s) 262
BstAUI TGTACA 1 cut(s) 651
BstBAI YACGTR 1 cut(s) 667
BstC8I GCNNGC 1 cut(s) 876
BstDEI CTNAG 8 cut(s) 141, 219, 321, 351, 765, 824, 844, 1445
BstDSI CCRYGG 1 cut(s) 1098
BstF5I GGATG 3 cut(s) 494, 1037, 1581
BstFNI CGCG 3 cut(s) 473, 1229, 1373
BstMAI GTCTC 4 cut(s) 73, 215, 253, 890
BstMWI GCNNNNNNNGC 3 cut(s) 782, 1518, 1527
BstNSI RCATGY 1 cut(s) 1162
BstPAI GACNNNNGTC 1 cut(s) 600
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 2 cut(s) 804, 1114
BstSNI TACGTA 1 cut(s) 667
BstUI CGCG 3 cut(s) 473, 1229, 1373
BstV1I GCAGC 3 cut(s) 300, 595, 1514
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 3 cut(s) 4, 163, 768
BstYI RGATCY 3 cut(s) 4, 163, 768
BstZ17I GTATAC 1 cut(s) 506
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 3 cut(s) 139, 627, 1133
BtgI CCRYGG 1 cut(s) 1098
BtgZI GCGATG 1 cut(s) 226
BtsCI GGATG 3 cut(s) 494, 1037, 1581
BtsIMutI CAGTG 1 cut(s) 997
BtuMI TCGCGA 1 cut(s) 1373
Cac8I GCNNGC 1 cut(s) 876
CciI TCATGA 1 cut(s) 690
Cfr10I RCCGGY 1 cut(s) 539
Csp6I GTAC 7 cut(s) 216, 585, 652, 1171, 1211, 1537, 1580
CspAI ACCGGT 1 cut(s) 539
CviAII CATG 6 cut(s) 59, 655, 691, 1027, 1159, 1378
CviQI GTAC 7 cut(s) 216, 585, 652, 1171, 1211, 1537, 1580
DdeI CTNAG 8 cut(s) 141, 219, 321, 351, 765, 824, 844, 1445
DraIII CACNNNGTG 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 3 cut(s) 577, 893, 1027
EarI CTCTTC 3 cut(s) 577, 893, 1027
EciI GGCGGA 1 cut(s) 1531
Ecl136II GAGCTC 1 cut(s) 570
Eco105I TACGTA 1 cut(s) 667
Eco24I GRGCYC 1 cut(s) 572
Eco53kI GAGCTC 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 494
EcoICRI GAGCTC 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 103
EcoT38I GRGCYC 1 cut(s) 572
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 6 cut(s) 62, 658, 694, 1030, 1162, 1381
FaqI GGGAC 2 cut(s) 38, 1546
FatI CATG 6 cut(s) 58, 654, 690, 1026, 1158, 1377
FauI CCCGC 1 cut(s) 1523
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 2 cut(s) 454, 505
Fnu4HI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
FokI GGATG 2 cut(s) 501, 1024
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
FspBI CTAG 2 cut(s) 755, 1253
GluI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
GsaI CCCAGC 1 cut(s) 1014
HaeIII GGCC 3 cut(s) 139, 627, 1133
HapII CCGG 4 cut(s) 174, 540, 593, 849
Hin1I GRCGYC 1 cut(s) 262
Hin1II CATG 6 cut(s) 62, 658, 694, 1030, 1162, 1381
HinfI GANTC 8 cut(s) 34, 92, 125, 429, 758, 855, 912, 1474
HpaII CCGG 4 cut(s) 174, 540, 593, 849
HphI GGTGA 2 cut(s) 487, 1139
Hpy166II GTNNAC 4 cut(s) 455, 506, 1149, 1173
Hpy188I TCNGA 6 cut(s) 39, 144, 322, 577, 768, 1282
Hpy188III TCNNGA 9 cut(s) 8, 169, 563, 691, 711, 755, 941, 1372, 1453
Hpy8I GTNNAC 4 cut(s) 455, 506, 1149, 1173
Hpy99I CGWCG 2 cut(s) 89, 965
HpyAV CCTTC 2 cut(s) 476, 1450
HpyCH4III ACNGT 3 cut(s) 808, 1118, 1170
HpyCH4IV ACGT 3 cut(s) 262, 666, 1535
HpyCH4V TGCA 2 cut(s) 101, 278
HpyF10VI GCNNNNNNNGC 3 cut(s) 782, 1518, 1527
HpyF3I CTNAG 8 cut(s) 141, 219, 321, 351, 765, 824, 844, 1445
HpySE526I ACGT 3 cut(s) 262, 666, 1535
Hsp92I GRCGYC 1 cut(s) 262
Hsp92II CATG 6 cut(s) 62, 658, 694, 1030, 1162, 1381
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 2 cut(s) 13, 242
Lsp1109I GCAGC 3 cut(s) 300, 595, 1514
LweI GCATC 2 cut(s) 110, 1187
MaeI CTAG 2 cut(s) 755, 1253
MaeII ACGT 3 cut(s) 262, 666, 1535
MaeIII GTNAC 2 cut(s) 178, 995
MboII GAAGA 9 cut(s) 285, 564, 791, 880, 1014, 1274, 1297, 1360, 1563
MflI RGATCY 3 cut(s) 4, 163, 768
MhlI GDGCHC 1 cut(s) 572
MluCI AATT 6 cut(s) 280, 394, 703, 1479, 1565, 1570
MluI ACGCGT 1 cut(s) 1227
MlyI GAGTC 3 cut(s) 864, 921, 1468
MmeI TCCRAC 3 cut(s) 290, 390, 724
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 3 cut(s) 78, 734, 1317
MslI CAYNNNNRTG 3 cut(s) 63, 927, 1097
MspA1I CMGCKG 2 cut(s) 313, 1202
MspI CCGG 4 cut(s) 174, 540, 593, 849
MspR9I CCNGG 1 cut(s) 593
MvnI CGCG 3 cut(s) 473, 1229, 1373
MwoI GCNNNNNNNGC 3 cut(s) 782, 1518, 1527
NciI CCSGG 1 cut(s) 593
NdeI CATATG 1 cut(s) 73
NlaIII CATG 6 cut(s) 62, 658, 694, 1030, 1162, 1381
NmuCI GTSAC 1 cut(s) 995
NruI TCGCGA 1 cut(s) 1373
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 1162
OliI CACNNNNGTG 1 cut(s) 927
PagI TCATGA 1 cut(s) 690
PciSI GCTCTTC 1 cut(s) 577
PfeI GAWTC 5 cut(s) 34, 92, 125, 429, 758
PinAI ACCGGT 1 cut(s) 539
PkrI GCNGC 6 cut(s) 315, 610, 629, 1112, 1275, 1529
PleI GAGTC 3 cut(s) 863, 920, 1468
PpsI GAGTC 3 cut(s) 863, 920, 1468
Ppu21I YACGTR 1 cut(s) 667
PshAI GACNNNNGTC 1 cut(s) 600
Psp124BI GAGCTC 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 1010
PsuI RGATCY 3 cut(s) 4, 163, 768
RruI TCGCGA 1 cut(s) 1373
RsaI GTAC 7 cut(s) 217, 586, 653, 1172, 1212, 1538, 1581
RsaNI GTAC 7 cut(s) 216, 585, 652, 1171, 1211, 1537, 1580
RseI CAYNNNNRTG 3 cut(s) 63, 927, 1097
SacI GAGCTC 1 cut(s) 572
SapI GCTCTTC 1 cut(s) 577
SaqAI TTAA 3 cut(s) 78, 734, 1317
SatI GCNGC 6 cut(s) 314, 609, 628, 1111, 1274, 1528
ScaI AGTACT 1 cut(s) 217
SchI GAGTC 3 cut(s) 864, 921, 1468
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 572
SfaNI GCATC 2 cut(s) 110, 1187
SfcI CTRYAG 2 cut(s) 804, 1114
SmiMI CAYNNNNRTG 3 cut(s) 63, 927, 1097
SmlI CTYRAG 2 cut(s) 8, 563
SmoI CTYRAG 2 cut(s) 8, 563
SnaBI TACGTA 1 cut(s) 667
Sse9I AATT 6 cut(s) 280, 394, 703, 1479, 1565, 1570
SspMI CTAG 2 cut(s) 755, 1253
SstI GAGCTC 1 cut(s) 572
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 3 cut(s) 808, 1118, 1170
TaiI ACGT 3 cut(s) 265, 669, 1538
TaqI TCGA 4 cut(s) 63, 710, 866, 1416
TasI AATT 6 cut(s) 280, 394, 703, 1479, 1565, 1570
TatI WGTACW 3 cut(s) 215, 651, 1170
TauI GCSGC 3 cut(s) 630, 1113, 1276
TfiI GAWTC 5 cut(s) 34, 92, 125, 429, 758
Tru1I TTAA 3 cut(s) 78, 734, 1317
Tru9I TTAA 3 cut(s) 78, 734, 1317
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 1 cut(s) 995
TseI GCWGC 3 cut(s) 313, 608, 1527
Tsp45I GTSAC 1 cut(s) 995
TspDTI ATGAA 5 cut(s) 99, 190, 336, 1043, 1486
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 1 cut(s) 997
XapI RAATTY 2 cut(s) 280, 394
XbaI TCTAGA 1 cut(s) 754
XceI RCATGY 1 cut(s) 1162
XcmI CCANNNNNNNNNTGG 1 cut(s) 1048
XmiI GTMKAC 2 cut(s) 454, 505
XspI CTAG 2 cut(s) 755, 1253
ZraI GACGTC 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 217
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.