MD12G1144700.v1.1

Amino acid transporter

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
22383544 .. 22387248
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1144700.v1.1.491

Sequence Viewer

Length: 1635 bp
ATGATGAGTGGGACGAAGATGGACGAGGATCTCGGTCCCGATCGCGGGGACGATCACTTTCACACCGAGGATGAAGAAAACCAGGCACACAGGGGGTGTGAGCAGTATGAAACCGACTCCGAATCCGATATCATCAGAGTTCCCACACCAAACTTATCACAGAACTCCATTGATATTAATACTAATGCATGGCCTCAAAGCTACAGGCAATCGATCGATATGTACACTAGTGTGACACCACCTTCCTTCGTATTTTTACGAGCTTCTAGTATTACATCAAATTTCTCTATCCTTGACAAGAGGCACTCAATATCATCTGATTCTGATTCCAGTTCTACTAGATTACTAATCTCTCAAAATTGGTTAGACAAAGAAATTCCTCCCTCACCTTCCCAAGCTGCCAAACTTTACTCTTCCTACGTCTCCCTGAATGAGTTGCCACCACCGCAAGAGCGATGCTGTTCTTTTTCTCAGGCTGTAATCAATGGAGTCAATGTGCTTTGTGGGATAGGGCTCCTTACAACCCCATATGCTATTAGGGAAGGAGGGTGGTTGAGCCTTATACTGCTTGCATTTTTCGGTGTCATCTGTTGCTATACTGGAATTTTATTGAAGAGGTGCTTAGAAAGCTGTCCGGGACTCCGAACCTACCCGGATATTGGCCAGGCAGCGTTCGGGTCAGCTGGCCGTTTTTTCCTATCTATAATATTGTATCTAGAACTATATGCTGCTTGTGTAGAGTTTTTGACTATGATGGGTGATAACTTGGCATCAGCATTTCCAAACACACATATGACATTTGCTGGTATCGATCTGGATTGCCACCAAATCTTTGCCATCATATCAACCCTTGTAATTCTTCCAACAGTATGGCTTCAAAACCTTAGTTTGCTCTCCTACCTCTCAGTTGGAGGAGTAGTTGCTTCAATCTTGGTTGCCCTTTGCTTGCTGTGGGTGGGTGTGGTGAACCAAGTTGGATTTCATCACAAAGGATCAGCCCTAAACCTCGCAGATATCTCTGTCACAATTGGAATATATGGTTTTGGCTTCGCTGGCCATTCGGTTTTCCCTAATATCTACACATCGATGAGGGAACCATCACAATTTTCAGCAGTTCTAATAACCAGTGTTACCTTTTGCTTCTTCATATACACTGGCGTAGCAGTATGTGGCTTTATGATGTTTGGAGACTCAATCCACTCTCAGTTCACTCTGAACATGCCCAAACAATTTGTTGCTTCTAAAATTTCAGTGTGGACAACAGTTGTGATCCCAATGACAAAGTATGCCTTGACGATGACACCAGTGGCCTTGAGTTTGGAGGAACTCTTTCCCGATGCTTGGATGGGATCTCACTTAGTTTCGATCATCGTTCGAACACTTCTAGTTCTATCAACTTTGGCTGTGGCAATGAATTTTCCATACTTTGGCTCTGTGATGGCATTGATTGGATCCTTTGTAGCAATGCTAGTGGCTGTTGTCTTCCCATGCGTGTGTTATCTCAAGCTACACAGTGGTCGATTAACTAAGTTGCAGATTGCAACTTGCATTATGATTATCAGTGTGGGGGTGGTGTGCTCTATTATTGGAACTTATTCTGCAATTTCAAGAATAGCTGAGCAAATTGTGGAGTGA

Protein Analysis

545

Amino Acids

59.5

Weight (kDa)

5.35

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 155 - 535 1.6e-63 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011681)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1427
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 45, 446
AclWI GGATC 6 cut(s) 36, 1000, 1264, 1357, 1446, 1459
AcoI YGGCCR 3 cut(s) 661, 685, 1054
AcsI RAATTY 5 cut(s) 280, 375, 603, 1245, 1414
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 5 cut(s) 44, 45, 659, 1341, 1427
AgsI TTSAA 4 cut(s) 613, 878, 927, 1608
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 2 cut(s) 81, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 963, 995
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 7 cut(s) 201, 263, 398, 630, 683, 1507, 1616
AluI AGCT 7 cut(s) 201, 263, 398, 630, 683, 1507, 1616
Alw21I GWGCWC 1 cut(s) 1580
Alw26I GTCTC 2 cut(s) 427, 1182
AlwI GGATC 6 cut(s) 36, 1000, 1264, 1357, 1446, 1459
AoxI GGCC 5 cut(s) 191, 661, 685, 1054, 1308
ApeKI GCWGC 3 cut(s) 398, 668, 728
ApoI RAATTY 5 cut(s) 280, 375, 603, 1245, 1414
AseI ATTAAT 1 cut(s) 177
Asp700I GAANNNNTTC 2 cut(s) 1329, 1594
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 2 cut(s) 636, 653
AsuHPI GGTGA 3 cut(s) 378, 770, 976
AsuII TTCGAA 1 cut(s) 1375
AvaII GGWCC 1 cut(s) 35
BalI TGGCCA 2 cut(s) 663, 1056
BamHI GGATCC 1 cut(s) 1451
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 1474
Bbv12I GWGCWC 1 cut(s) 1580
BbvI GCAGC 3 cut(s) 385, 680, 715
BccI CCATC 6 cut(s) 13, 748, 845, 1105, 1339, 1432
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 2 cut(s) 83, 665
BcnI CCSGG 2 cut(s) 636, 653
BcoDI GTCTC 2 cut(s) 427, 1182
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 6 cut(s) 228, 267, 339, 716, 1385, 1469
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 3 cut(s) 399, 669, 729
BlpI GCTNAGC 1 cut(s) 1617
BlsI GCNGC 3 cut(s) 400, 670, 730
Bme1390I CCNGG 4 cut(s) 83, 636, 653, 665
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 4 cut(s) 37, 515, 1095, 1453
BmrFI CCNGG 4 cut(s) 83, 636, 653, 665
BmsI GCATC 3 cut(s) 446, 779, 1327
BpiI GAAGAC 1 cut(s) 1474
Bpu1102I GCTNAGC 1 cut(s) 1617
Bpu14I TTCGAA 1 cut(s) 1375
BpuEI CTTGAG 2 cut(s) 1333, 1487
BpuMI CCSGG 2 cut(s) 636, 653
Bsa29I ATCGAT 4 cut(s) 212, 216, 810, 1085
BsaJI CCNNGG 1 cut(s) 66
BsaXI ACNNNNNCTCC 4 cut(s) 480, 510, 903, 933
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 45, 659, 1341, 1427
Bse1I ACTGG 5 cut(s) 330, 604, 1125, 1159, 1304
Bse3DI GCAATG 2 cut(s) 1416, 1470
BseBI CCWGG 2 cut(s) 83, 665
BseCI ATCGAT 4 cut(s) 212, 216, 810, 1085
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 76, 1350
BseLI CCNNNNNNNGG 5 cut(s) 44, 45, 659, 1341, 1427
BseMI GCAATG 2 cut(s) 1416, 1470
BseMII CTCAG 4 cut(s) 485, 918, 1217, 1608
BseNI ACTGG 5 cut(s) 330, 604, 1125, 1159, 1304
BseRI GAGGAG 1 cut(s) 927
BseXI GCAGC 3 cut(s) 385, 680, 715
Bsh1236I CGCG 1 cut(s) 45
Bsh1285I CGRYCG 2 cut(s) 43, 216
BshFI GGCC 5 cut(s) 193, 663, 687, 1056, 1310
BshVI ATCGAT 4 cut(s) 212, 216, 810, 1085
BsiEI CGRYCG 2 cut(s) 43, 216
BsiHKAI GWGCWC 1 cut(s) 1580
BsiSI CCGG 2 cut(s) 635, 653
BslFI GGGAC 4 cut(s) 21, 25, 62, 651
BslI CCNNNNNNNGG 5 cut(s) 44, 45, 659, 1341, 1427
BsmAI GTCTC 2 cut(s) 427, 1182
BsmBI CGTCTC 1 cut(s) 427
BsmFI GGGAC 4 cut(s) 21, 25, 62, 651
BsnI GGCC 5 cut(s) 193, 663, 687, 1056, 1310
Bsp119I TTCGAA 1 cut(s) 1375
Bsp1286I GDGCHC 2 cut(s) 516, 1580
Bsp1407I TGTACA 1 cut(s) 222
Bsp1720I GCTNAGC 1 cut(s) 1617
BspACI CCGC 2 cut(s) 45, 446
BspANI GGCC 5 cut(s) 193, 663, 687, 1056, 1310
BspCNI CTCAG 4 cut(s) 484, 917, 1216, 1609
BspDI ATCGAT 4 cut(s) 212, 216, 810, 1085
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 37, 515, 1095, 1453
BspPI GGATC 6 cut(s) 36, 1000, 1264, 1357, 1446, 1459
BspT104I TTCGAA 1 cut(s) 1375
BsrDI GCAATG 2 cut(s) 1416, 1470
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 5 cut(s) 330, 604, 1125, 1159, 1304
BssECI CCNNGG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 83, 665
Bst4CI ACNGT 3 cut(s) 868, 1264, 1514
Bst6I CTCTTC 2 cut(s) 418, 608
BstAUI TGTACA 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 1375
BstC8I GCNNGC 4 cut(s) 570, 685, 947, 1054
BstDEI CTNAG 8 cut(s) 471, 622, 884, 904, 1203, 1357, 1527, 1617
BstF5I GGATG 2 cut(s) 76, 1350
BstFNI CGCG 1 cut(s) 45
BstMAI GTCTC 2 cut(s) 427, 1182
BstMCI CGRYCG 2 cut(s) 43, 216
BstMWI GCNNNNNNNGC 3 cut(s) 445, 627, 1053
BstNI CCWGG 2 cut(s) 83, 665
BstNSI RCATGY 1 cut(s) 1222
BstSCI CCNGG 4 cut(s) 81, 634, 651, 663
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 3 cut(s) 385, 680, 715
BstV2I GAAGAC 1 cut(s) 1474
BstX2I RGATCY 3 cut(s) 28, 1349, 1451
BstXI CCANNNNNNTGG 1 cut(s) 870
BstYI RGATCY 3 cut(s) 28, 1349, 1451
Bsu15I ATCGAT 4 cut(s) 212, 216, 810, 1085
BsuRI GGCC 5 cut(s) 193, 663, 687, 1056, 1310
BsuTUI ATCGAT 4 cut(s) 212, 216, 810, 1085
BtgZI GCGATG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 76, 1350
BtsIMutI CAGTG 6 cut(s) 1132, 1152, 1257, 1311, 1519, 1567
Cac8I GCNNGC 4 cut(s) 570, 685, 947, 1054
Cfr13I GGNCC 1 cut(s) 35
ClaI ATCGAT 4 cut(s) 212, 216, 810, 1085
Csp6I GTAC 1 cut(s) 223
CspCI CAANNNNNGTGG 2 cut(s) 1452, 1487
CviAII CATG 3 cut(s) 189, 1219, 1488
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 8 cut(s) 471, 622, 884, 904, 1203, 1357, 1527, 1617
EaeI YGGCCR 3 cut(s) 661, 685, 1054
Eam1104I CTCTTC 2 cut(s) 418, 608
EarI CTCTTC 2 cut(s) 418, 608
Eco24I GRGCYC 1 cut(s) 516
Eco32I GATATC 2 cut(s) 130, 1015
Eco47I GGWCC 1 cut(s) 35
EcoRII CCWGG 2 cut(s) 81, 663
EcoRV GATATC 2 cut(s) 130, 1015
EcoT22I ATGCAT 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 516
Esp3I CGTCTC 1 cut(s) 427
FaeI CATG 3 cut(s) 192, 1222, 1491
FalI AAGNNNNNCTT 4 cut(s) 605, 637, 1274, 1306
FaqI GGGAC 4 cut(s) 21, 25, 62, 651
FatI CATG 3 cut(s) 188, 1218, 1487
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 2 cut(s) 529, 792
Fnu4HI GCNGC 3 cut(s) 399, 669, 729
FokI GGATG 2 cut(s) 83, 1357
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 3 cut(s) 399, 669, 729
FspBI CTAG 6 cut(s) 228, 267, 339, 716, 1385, 1469
GluI GCNGC 3 cut(s) 399, 669, 729
HaeIII GGCC 5 cut(s) 193, 663, 687, 1056, 1310
HapII CCGG 2 cut(s) 635, 653
Hin1II CATG 3 cut(s) 192, 1222, 1491
HinfI GANTC 7 cut(s) 116, 122, 320, 326, 489, 639, 1190
HpaII CCGG 2 cut(s) 635, 653
HphI GGTGA 3 cut(s) 378, 770, 976
Hpy166II GTNNAC 4 cut(s) 225, 967, 1209, 1257
Hpy188I TCNGA 7 cut(s) 121, 127, 137, 319, 325, 644, 1215
Hpy188III TCNNGA 5 cut(s) 38, 716, 815, 1334, 1608
Hpy8I GTNNAC 4 cut(s) 225, 967, 1209, 1257
HpyAV CCTTC 4 cut(s) 252, 256, 399, 536
HpyCH4III ACNGT 3 cut(s) 868, 1264, 1514
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 6 cut(s) 188, 572, 1534, 1541, 1548, 1601
HpyF10VI GCNNNNNNNGC 3 cut(s) 445, 627, 1053
HpyF3I CTNAG 8 cut(s) 471, 622, 884, 904, 1203, 1357, 1527, 1617
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 3 cut(s) 192, 1222, 1491
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 3 cut(s) 385, 680, 715
LweI GCATC 3 cut(s) 446, 779, 1327
MaeI CTAG 6 cut(s) 228, 267, 339, 716, 1385, 1469
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 3 cut(s) 232, 1021, 1129
MboII GAAGA 7 cut(s) 28, 86, 405, 625, 851, 1135, 1474
MfeI CAATTG 1 cut(s) 1026
MflI RGATCY 3 cut(s) 28, 1349, 1451
MhlI GDGCHC 2 cut(s) 516, 1580
MlsI TGGCCA 2 cut(s) 663, 1056
MluNI TGGCCA 2 cut(s) 663, 1056
MlyI GAGTC 4 cut(s) 110, 498, 633, 1184
MmeI TCCRAC 3 cut(s) 887, 889, 955
Mox20I TGGCCA 2 cut(s) 663, 1056
Mph1103I ATGCAT 1 cut(s) 190
MroXI GAANNNNTTC 2 cut(s) 1329, 1594
MscI TGGCCA 2 cut(s) 663, 1056
MseI TTAA 2 cut(s) 177, 1523
MslI CAYNNNNRTG 4 cut(s) 230, 791, 1085, 1492
Msp20I TGGCCA 2 cut(s) 663, 1056
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 635, 653
MspR9I CCNGG 4 cut(s) 83, 636, 653, 665
MunI CAATTG 1 cut(s) 1026
MvaI CCWGG 2 cut(s) 83, 665
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 445, 627, 1053
NciI CCSGG 2 cut(s) 636, 653
NdeI CATATG 2 cut(s) 529, 792
NlaIII CATG 3 cut(s) 192, 1222, 1491
NlaIV GGNNCC 4 cut(s) 37, 515, 1095, 1453
NmuCI GTSAC 2 cut(s) 232, 1021
NsiI ATGCAT 1 cut(s) 190
NspI RCATGY 1 cut(s) 1222
NspV TTCGAA 1 cut(s) 1375
OliI CACNNNNGTG 1 cut(s) 230
PdmI GAANNNNTTC 2 cut(s) 1329, 1594
PfeI GAWTC 3 cut(s) 122, 320, 326
PflMI CCANNNNNTGG 1 cut(s) 1427
PfoI TCCNGGA 1 cut(s) 634
PkrI GCNGC 3 cut(s) 400, 670, 730
Ple19I CGATCG 2 cut(s) 43, 216
PleI GAGTC 4 cut(s) 110, 497, 633, 1184
PpsI GAGTC 4 cut(s) 110, 497, 633, 1184
PshBI ATTAAT 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 81, 663
PspGI CCWGG 2 cut(s) 81, 663
PspN4I GGNNCC 4 cut(s) 37, 515, 1095, 1453
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 3 cut(s) 28, 1349, 1451
PvuI CGATCG 2 cut(s) 43, 216
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 4 cut(s) 230, 791, 1085, 1492
SaqAI TTAA 2 cut(s) 177, 1523
SatI GCNGC 3 cut(s) 399, 669, 729
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 4 cut(s) 110, 498, 633, 1184
ScrFI CCNGG 4 cut(s) 83, 636, 653, 665
SduI GDGCHC 2 cut(s) 516, 1580
SfaNI GCATC 3 cut(s) 446, 779, 1327
SfcI CTRYAG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 1375
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 4 cut(s) 230, 791, 1085, 1492
SmlI CTYRAG 2 cut(s) 1312, 1502
SmoI CTYRAG 2 cut(s) 1312, 1502
SpeI ACTAGT 1 cut(s) 227
SsiI CCGC 2 cut(s) 45, 446
SspI AATATT 1 cut(s) 708
SspMI CTAG 6 cut(s) 228, 267, 339, 716, 1385, 1469
StyD4I CCNGG 4 cut(s) 81, 634, 651, 663
TaaI ACNGT 3 cut(s) 868, 1264, 1514
TaiI ACGT 1 cut(s) 423
TaqI TCGA 7 cut(s) 212, 216, 810, 1085, 1364, 1375, 1519
TaqII GACCGA 1 cut(s) 23
TatI WGTACW 1 cut(s) 222
TfiI GAWTC 3 cut(s) 122, 320, 326
Tru1I TTAA 2 cut(s) 177, 1523
Tru9I TTAA 2 cut(s) 177, 1523
TscAI CASTG 6 cut(s) 1132, 1159, 1257, 1311, 1519, 1567
TseFI GTSAC 2 cut(s) 232, 1021
TseI GCWGC 3 cut(s) 398, 668, 728
Tsp45I GTSAC 2 cut(s) 232, 1021
TspDTI ATGAA 5 cut(s) 87, 123, 971, 1135, 1427
TspRI CASTG 6 cut(s) 1132, 1159, 1257, 1311, 1519, 1567
Van91I CCANNNNNTGG 1 cut(s) 1427
VpaK11BI GGWCC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 5 cut(s) 280, 375, 603, 1245, 1414
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 1 cut(s) 1222
XmnI GAANNNNTTC 2 cut(s) 1329, 1594
XspI CTAG 6 cut(s) 228, 267, 339, 716, 1385, 1469
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.