AT5G02170

amino acid transporter

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
427642 .. 430695
3054 bp
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UTR
Exon/CDS
Intron
AT5G02170.1

Sequence Viewer

Length: 1581 bp
ATGAAGCAAAACGAGACATTCGATCAAGAAAGGGAAGATTTGTATCACACGTTCGATGAGGAAGATGAAGAAAGCCAAACAGAGAGCTCCGTTCCCTCAACTCCTTTATCTCGTAACAGATCCGAAGACGTTCCCGTTCCGTGGCCTCGAAGTTATCGACAATCTATGGATTTGTTGACTGGAGTTACACCTCCGACTAGTACAAGTTTTGTCTCTTCATTTCGCCAGAGACGACAAAGCTCTGTTTTCGGTTCGTTTACTTCTTCACCAAGCAAACAGCAACTTCTCATAGACAAAGACGAGATCCAAAGCTCTGTTGTGTCCTCCATCAAATCATTTCTTGCTTCTCATCTCCAGCTATCAGTCCCAGGGGATCTTTTAACTCCCCAAGAAAACCGCAGTTGCACATTCTCTCAATCCGTTCTCAACGGAATTAACGTTCTATGTGGAGTAGCTTTACTTACAATGCCTTACGCAGTTAAAGAAGGAGGATGGTTAGGGCTTTTCATACTCTTCTCCTTTGGCATTATCACTTTCTACACCGGCATTCTCCTCAAGAGATGTCTCGAGAACTCCCCTGGAATCCACACTTACCCGGACATCGGTCAAGCTGCATTCGGAACCACTGGACGCATCCTCGTCTCTATACTTCTCTACGTAGAGTTATACGCATCTTGTGTGGAATACATAATCATGATGAGTGATAATTTGTCAAGAATGTTCCCAAATACCTCCTTATACATCAACGGATTTTCTTTAGATTCTACTCAAGTTTTCGCCATTACCACGACTCTTATTGTTCTTCCTACTGTCTGGCTCAAAGACCTCAGCTTATTGTCCTATCTCTCAGCCGGAGGTGTCATCTCCTCAATCTTGCTTGCGCTTTGCCTCTTTTGGGCTGGATCAGTAGACGGGGTTGGATTTCACATAAGCGGACAAGCTCTTGATATAACTAACATACCTGTCGCAATCGGAATTTACGGGTTCGGTTTCGGGAGTCACTCTGTTTTCCCCAACATTTACTCATCCATGAAAGAACCTTCCAAGTTTCCTACGGTGCTTCTCATCAGTTTTGCGTTTTGCACTCTATTTTACATTGCGGTAGCGGTTTGTGGATTCACGATGTTTGGTGATGCGATTCAATCCCAATTTACACTGAACATGCCACCACATTTCACCTCATCTAAAATCGCAGTCTGGACAGCGGTCGTAACACCAATGACGAAATACGCTTTAACGATCACTCCAGTAATGCTAAGCCTAGAAGAACTCATACCGTCTTCATCAAGAAAGATGAGATCCAAAGGTGTCTCTATGCTCTTTAGAACCATATTAGTTCTCTCCACTTTGGTCGTTGCACTCACAGTTCCATTCTTCGCTACTGTGGCGGCTCTGATTGGATCTTTCATCGCAATGCTTATCGCGTTAATATTCCCGTGTCTCTGTTATATCAGCATTATGAAGGGTAGATTAACTAACTTTCAGATTGGAATTTGTATTTTAATCGTGATAATCGGCATTGTAAGCGGTTGTTGCGGGACTTATTCTGCTATCGCCAGATTAATCGGCGAAATGACCTGA

Protein Analysis

526

Amino Acids

57.54

Weight (kDa)

5.91

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 136 - 517 9.4e-69 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011681)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 909
AccII CGCG 1 cut(s) 1424
AciI CCGC 8 cut(s) 397, 933, 1100, 1106, 1205, 1388, 1527, 1536
AclI AACGTT 1 cut(s) 438
AclWI GGATC 6 cut(s) 114, 298, 381, 910, 1293, 1408
AcsI RAATTY 2 cut(s) 975, 1491
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 3 cut(s) 141, 602, 895
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 1 cut(s) 1142
AhlI ACTAGT 1 cut(s) 197
AjnI CCWGG 2 cut(s) 367, 577
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 8 cut(s) 87, 240, 312, 358, 455, 611, 831, 941
AluI AGCT 8 cut(s) 87, 240, 312, 358, 455, 611, 831, 941
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 7 cut(s) 8, 217, 223, 569, 646, 1315, 1445
AlwI GGATC 6 cut(s) 114, 298, 381, 910, 1293, 1408
Ama87I CYCGRG 1 cut(s) 566
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 611
ApoI RAATTY 2 cut(s) 975, 1491
AseI ATTAAT 1 cut(s) 1562
Asp700I GAANNNNTTC 1 cut(s) 129
AspLEI GCGC 1 cut(s) 883
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 3 cut(s) 258, 1142, 1168
AvaI CYCGRG 1 cut(s) 566
BanII GRGCYC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 1257, 1289
BbsI GAAGAC 2 cut(s) 132, 1272
Bbv12I GWGCWC 1 cut(s) 89
BbvCI CCTCAGC 1 cut(s) 827
BbvI GCAGC 1 cut(s) 598
BccI CCATC 2 cut(s) 335, 486
BciT130I CCWGG 2 cut(s) 369, 579
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 7 cut(s) 8, 217, 223, 569, 646, 1315, 1445
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 2 cut(s) 198, 1262
BisI GCNGC 2 cut(s) 612, 1389
BlpI GCTNAGC 1 cut(s) 1256
BlsI GCNGC 2 cut(s) 613, 1390
Bme1390I CCNGG 3 cut(s) 369, 579, 596
BmeT110I CYCGRG 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 622
BmrFI CCNGG 3 cut(s) 369, 579, 596
BmsI GCATC 3 cut(s) 642, 680, 1123
BoxI GACNNNNGTC 2 cut(s) 603, 1205
BpiI GAAGAC 2 cut(s) 132, 1272
BpmI CTGGAG 3 cut(s) 201, 338, 1230
Bpu10I CCTNAGC 1 cut(s) 827
Bpu1102I GCTNAGC 1 cut(s) 1256
BpuEI CTTGAG 2 cut(s) 539, 753
BpuMI CCSGG 1 cut(s) 596
BsaAI YACGTR 1 cut(s) 658
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 4 cut(s) 140, 367, 368, 577
BsaXI ACNNNNNCTCC 2 cut(s) 1228, 1258
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 602, 895
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 3 cut(s) 184, 631, 1247
Bse3DI GCAATG 2 cut(s) 1095, 1419
Bse8I GATNNNNATC 1 cut(s) 42
BseBI CCWGG 2 cut(s) 369, 579
BseDI CCNNGG 4 cut(s) 140, 367, 368, 577
BseGI GGATG 3 cut(s) 497, 633, 1025
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 3 cut(s) 141, 602, 895
BseMI GCAATG 2 cut(s) 1095, 1419
BseMII CTCAG 2 cut(s) 841, 861
BseNI ACTGG 3 cut(s) 184, 631, 1247
BseRI GAGGAG 2 cut(s) 542, 856
BseXI GCAGC 1 cut(s) 598
Bsh1236I CGCG 1 cut(s) 1424
Bsh1285I CGRYCG 1 cut(s) 1209
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 1209
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 1 cut(s) 566
BsiSI CCGG 3 cut(s) 543, 596, 852
BslFI GGGAC 2 cut(s) 350, 1552
BslI CCNNNNNNNGG 3 cut(s) 141, 602, 895
BsmAI GTCTC 7 cut(s) 8, 217, 223, 569, 646, 1315, 1445
BsmBI CGTCTC 2 cut(s) 223, 646
BsmFI GGGAC 2 cut(s) 350, 1552
BsmI GAATGC 2 cut(s) 546, 614
BsnI GGCC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
Bsp1720I GCTNAGC 1 cut(s) 1256
BspACI CCGC 8 cut(s) 397, 933, 1100, 1106, 1205, 1388, 1527, 1536
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 2 cut(s) 840, 860
BspFNI CGCG 1 cut(s) 1424
BspHI TCATGA 1 cut(s) 693
BspLI GGNNCC 1 cut(s) 622
BspPI GGATC 6 cut(s) 114, 298, 381, 910, 1293, 1408
BsrDI GCAATG 2 cut(s) 1095, 1419
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 3 cut(s) 184, 631, 1247
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 4 cut(s) 140, 367, 368, 577
BssMI GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
Bst2UI CCWGG 2 cut(s) 369, 579
Bst4CI ACNGT 5 cut(s) 811, 1057, 1278, 1366, 1384
Bst6I CTCTTC 2 cut(s) 220, 518
BstBAI YACGTR 1 cut(s) 658
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 3 cut(s) 827, 847, 1256
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 3 cut(s) 497, 633, 1025
BstFNI CGCG 1 cut(s) 1424
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 8 cut(s) 25, 122, 306, 376, 905, 1242, 1301, 1403
BstMAI GTCTC 7 cut(s) 8, 217, 223, 569, 646, 1315, 1445
BstMBI GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
BstMCI CGRYCG 1 cut(s) 1209
BstMWI GCNNNNNNNGC 3 cut(s) 1385, 1524, 1533
BstNI CCWGG 2 cut(s) 369, 579
BstNSI RCATGY 1 cut(s) 1165
BstPAI GACNNNNGTC 2 cut(s) 603, 1205
BstSCI CCNGG 3 cut(s) 367, 577, 594
BstSNI TACGTA 1 cut(s) 658
BstUI CGCG 1 cut(s) 1424
BstV1I GCAGC 1 cut(s) 598
BstV2I GAAGAC 2 cut(s) 132, 1272
BstX2I RGATCY 5 cut(s) 119, 303, 373, 1298, 1400
BstYI RGATCY 5 cut(s) 119, 303, 373, 1298, 1400
BsuRI GGCC 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 140
BtgZI GCGATG 1 cut(s) 1393
BtsCI GGATG 3 cut(s) 497, 633, 1025
BtsIMutI CAGTG 2 cut(s) 624, 1154
Cac8I GCNNGC 1 cut(s) 879
CciI TCATGA 1 cut(s) 693
CfoI GCGC 1 cut(s) 883
Cfr10I RCCGGY 1 cut(s) 542
CseI GACGC 1 cut(s) 639
Csp6I GTAC 1 cut(s) 201
CviAII CATG 3 cut(s) 694, 1030, 1162
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 3 cut(s) 827, 847, 1256
DpnI GATC 8 cut(s) 24, 121, 305, 375, 904, 1241, 1300, 1402
DpnII GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
Eam1104I CTCTTC 2 cut(s) 220, 518
EarI CTCTTC 2 cut(s) 220, 518
Ecl136II GAGCTC 1 cut(s) 87
Eco105I TACGTA 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 367, 577
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 2 cut(s) 223, 646
FaeI CATG 3 cut(s) 697, 1033, 1165
FaqI GGGAC 2 cut(s) 350, 1552
FatI CATG 3 cut(s) 693, 1029, 1161
FauI CCCGC 1 cut(s) 1529
FblI GTMKAC 1 cut(s) 909
Fnu4HI GCNGC 2 cut(s) 612, 1389
FokI GGATG 3 cut(s) 504, 620, 1012
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 612, 1389
FspBI CTAG 2 cut(s) 198, 1262
GlaI GCGC 1 cut(s) 882
GluI GCNGC 2 cut(s) 612, 1389
GsuI CTGGAG 3 cut(s) 201, 338, 1230
HaeIII GGCC 1 cut(s) 145
HapII CCGG 3 cut(s) 543, 596, 852
HgaI GACGC 1 cut(s) 639
HhaI GCGC 1 cut(s) 883
Hin1II CATG 3 cut(s) 697, 1033, 1165
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HincII GTYRAC 1 cut(s) 177
HindII GTYRAC 1 cut(s) 177
HinfI GANTC 6 cut(s) 582, 761, 790, 997, 1116, 1138
HpaII CCGG 3 cut(s) 543, 596, 852
HphI GGTGA 3 cut(s) 258, 1142, 1168
Hpy166II GTNNAC 3 cut(s) 177, 258, 910
Hpy188I TCNGA 6 cut(s) 124, 195, 620, 974, 1395, 1485
Hpy8I GTNNAC 3 cut(s) 177, 258, 910
HpyAV CCTTC 3 cut(s) 479, 1050, 1456
HpyCH4III ACNGT 5 cut(s) 811, 1057, 1278, 1366, 1384
HpyCH4IV ACGT 4 cut(s) 50, 129, 438, 657
HpyCH4V TGCA 4 cut(s) 405, 614, 1083, 1358
HpyF10VI GCNNNNNNNGC 3 cut(s) 1385, 1524, 1533
HpyF3I CTNAG 3 cut(s) 827, 847, 1256
HpySE526I ACGT 4 cut(s) 50, 129, 438, 657
Hsp92II CATG 3 cut(s) 697, 1033, 1165
HspAI GCGC 1 cut(s) 881
Kzo9I GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 598
LweI GCATC 3 cut(s) 642, 680, 1123
MaeI CTAG 2 cut(s) 198, 1262
MaeII ACGT 4 cut(s) 50, 129, 438, 657
MaeIII GTNAC 4 cut(s) 113, 184, 998, 1210
MalI GATC 8 cut(s) 24, 121, 305, 375, 904, 1241, 1300, 1402
MboI GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
MflI RGATCY 5 cut(s) 119, 303, 373, 1298, 1400
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 5 cut(s) 432, 706, 975, 1148, 1491
MlyI GAGTC 2 cut(s) 784, 1006
MmeI TCCRAC 2 cut(s) 218, 898
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 8 cut(s) 380, 435, 480, 1235, 1427, 1472, 1502, 1562
MslI CAYNNNNRTG 2 cut(s) 692, 1412
MspA1I CMGCKG 1 cut(s) 1205
MspI CCGG 3 cut(s) 543, 596, 852
MspR9I CCNGG 3 cut(s) 369, 579, 596
Mva1269I GAATGC 2 cut(s) 546, 614
MvaI CCWGG 2 cut(s) 369, 579
MvnI CGCG 1 cut(s) 1424
MwoI GCNNNNNNNGC 3 cut(s) 1385, 1524, 1533
NciI CCSGG 1 cut(s) 596
NdeII GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
NlaIII CATG 3 cut(s) 697, 1033, 1165
NlaIV GGNNCC 1 cut(s) 622
NmuCI GTSAC 1 cut(s) 998
NspI RCATGY 1 cut(s) 1165
PaeR7I CTCGAG 1 cut(s) 566
PagI TCATGA 1 cut(s) 693
PasI CCCWGGG 1 cut(s) 368
PcsI WCGNNNNNNNCGW 4 cut(s) 18, 154, 229, 435
PctI GAATGC 2 cut(s) 546, 614
PdmI GAANNNNTTC 1 cut(s) 129
PfeI GAWTC 4 cut(s) 582, 761, 1116, 1138
PkrI GCNGC 2 cut(s) 613, 1390
PleI GAGTC 2 cut(s) 784, 1005
PpsI GAGTC 2 cut(s) 784, 1005
Ppu21I YACGTR 1 cut(s) 658
PshAI GACNNNNGTC 2 cut(s) 603, 1205
PshBI ATTAAT 1 cut(s) 1562
Psp124BI GAGCTC 1 cut(s) 89
Psp1406I AACGTT 1 cut(s) 438
Psp6I CCWGG 2 cut(s) 367, 577
PspGI CCWGG 2 cut(s) 367, 577
PspN4I GGNNCC 1 cut(s) 622
PsrI GAACNNNNNNTAC 2 cut(s) 35, 67
PsuI RGATCY 5 cut(s) 119, 303, 373, 1298, 1400
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 2 cut(s) 692, 1412
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 8 cut(s) 380, 435, 480, 1235, 1427, 1472, 1502, 1562
SatI GCNGC 2 cut(s) 612, 1389
Sau3AI GATC 8 cut(s) 22, 119, 303, 373, 902, 1239, 1298, 1400
SchI GAGTC 2 cut(s) 784, 1006
ScrFI CCNGG 3 cut(s) 369, 579, 596
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 3 cut(s) 642, 680, 1123
Sfr274I CTCGAG 1 cut(s) 566
SlaI CTCGAG 1 cut(s) 566
SmiMI CAYNNNNRTG 2 cut(s) 692, 1412
SmlI CTYRAG 3 cut(s) 554, 566, 768
SmoI CTYRAG 3 cut(s) 554, 566, 768
SnaBI TACGTA 1 cut(s) 658
SpeI ACTAGT 1 cut(s) 197
Sse9I AATT 5 cut(s) 432, 706, 975, 1148, 1491
SsiI CCGC 8 cut(s) 397, 933, 1100, 1106, 1205, 1388, 1527, 1536
SspI AATATT 1 cut(s) 1431
SspMI CTAG 2 cut(s) 198, 1262
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 367, 577, 594
TaaI ACNGT 5 cut(s) 811, 1057, 1278, 1366, 1384
TaiI ACGT 4 cut(s) 53, 132, 441, 660
TaqI TCGA 5 cut(s) 21, 54, 148, 157, 567
TaqII GACCGA 1 cut(s) 593
TasI AATT 5 cut(s) 432, 706, 975, 1148, 1491
TatI WGTACW 1 cut(s) 200
TauI GCSGC 1 cut(s) 1391
TfiI GAWTC 4 cut(s) 582, 761, 1116, 1138
Tru1I TTAA 8 cut(s) 380, 435, 480, 1235, 1427, 1472, 1502, 1562
Tru9I TTAA 8 cut(s) 380, 435, 480, 1235, 1427, 1472, 1502, 1562
TscAI CASTG 2 cut(s) 631, 1161
TseFI GTSAC 1 cut(s) 998
TseI GCWGC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 998
TspDTI ATGAA 8 cut(s) 17, 81, 207, 496, 1046, 1272, 1396, 1475
TspGWI ACGGA 5 cut(s) 79, 129, 409, 444, 762
TspRI CASTG 2 cut(s) 631, 1161
VspI ATTAAT 1 cut(s) 1562
XapI RAATTY 2 cut(s) 975, 1491
XceI RCATGY 1 cut(s) 1165
XhoI CTCGAG 1 cut(s) 566
XmiI GTMKAC 1 cut(s) 909
XmnI GAANNNNTTC 1 cut(s) 129
XspI CTAG 2 cut(s) 198, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.