Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022084.1

Orthogroup ID

OG0011681

Physical Location & Seq

Genomic Coordinates Forward (+)

13193 .. 15966

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022084.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atgagcagttggacgaagctggatgaggatcttggaccggagcgcggggacgatgattttttaacagatgatgaagagaaccaagcacacagaaacaactatgagccttccgaagccgaaactgaatctgaagtaggcagacctgagggcattgccattagtgcacctaacaataatgcatggcctcagagctactggcagtccatcgatatgtacaccaatgtcatgactcctccttcccttccttcccttacttttatgcgatcaagagggcccagtttcagctccttgtcttcgtttgttaaggggcaacaagcacctgatgataattcttcacagctcagtagcaaattacttgcttccgaagcaagtttagaaaaagaagggcttgcagcatcatctcccccaactctctccgcaaaaaattctgtctgtgaattgccaccgccaaaggaacatagttgttcattttcacaagctgtactcaatggaatcaatgtcttgtgtgggatgggacttattacaacaccatatgcaataaaagaaggagggtggttgagcctcattttacttgcattgtttggtgtgatatgttgctatactggaattttattaatgcgatgtttagaaagttgtcccggactccgaacctatccagatattggccaggctgcttttggctctactggccgtttaattctatctggtgcttgtgtggagtttttgacgatgatgggcgataacttagcggcaatattcccaaacacccacatagcatttgcaggaatccatcttcaaagtcatgaaatttttgccatcacagcgactcttgtagttcttcccactgtatggcttcaaaatcttagtttgctctcttacctctcagttggaggagtaggtgcatcgattctggtggcctttttattgctgtgggttggggctgtgaaccaagttggctttcatcacagtggatccgccttaaacctttccggtttgtctgtcacaattggtatatatggtttcggctacgctggtcattcagtgttcccaaatatctacacatctatgagaaaaccatctcaatttccagcagttctactaacctgtggtgccttttgcttcttcatgtatactggggtagcaatatgtggctatctaatgtttggagactcggtgaggtctcagttcactctaaacatgcccgaagaatttgttgcttcaaaaattgcagtctggacaacaattgtgaacccgatgacaaagtatgccctcacaataacgcccgttgctctgagtttagaggaactctttcctgtagcttggatgggatcacatttggcttcaatccttacaagaacagttctagttctatcaactttggtcgtagcgttgagctttccattctttggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

470

Amino Acids

50.57

Weight (kDa)

4.97

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09330 AT3G09340 AT5G02170 AT5G02170 AT5G02180 AT5G02180
fragaria_vesca	FvH4_6g13370 FvH4_6g13370
malus_domestica	MD12G1144700.v1.1
prunus_persica	Prupe.6G258200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466251
rosa_laevigata	RLG00000024593
rosa_multiflora	Rmu_sc0000350.1_g000014 Rmu_sc0022084.1_g000006
rosa_roxburghii	Rroxscaffold_6G00414690
rosa_rugosa	Rorug03G0080600
rosa_samantha	Rh3BG148000 Rh3DG148700
rosa_wichuraiana	Rw3G011960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1109
AccB7I	CCANNNNNTGG	3 cut(s)	662, 849, 1406
AccI	GTMKAC	1 cut(s)	1130
AccII	CGCG	1 cut(s)	45
AciI	CCGC	5 cut(s)	45, 417, 446, 749, 975
AclWI	GGATC	4 cut(s)	36, 966, 979, 1336
AcoI	YGGCCR	2 cut(s)	664, 688
AcsI	RAATTY	4 cut(s)	424, 606, 807, 1208
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	215, 483
AfiI	CCNNNNNNNGG	4 cut(s)	44, 662, 849, 1406
AgsI	TTSAA	4 cut(s)	797, 857, 1221, 1344
AjnI	CCWGG	1 cut(s)	666
AjuI	GAANNNNNNNTTGG	2 cut(s)	942, 974
AluBI	AGCT	7 cut(s)	19, 192, 285, 340, 479, 1319, 1395
AluI	AGCT	7 cut(s)	19, 192, 285, 340, 479, 1319, 1395
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	1161, 1185
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	4 cut(s)	36, 966, 979, 1336
AoxI	GGCC	5 cut(s)	182, 272, 664, 688, 915
ApaI	GGGCCC	1 cut(s)	276
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	392, 671
ApoI	RAATTY	4 cut(s)	424, 606, 807, 1208
AseI	ATTAAT	1 cut(s)	614
Asp700I	GAANNNNTTC	1 cut(s)	1308
AspLEI	GCGC	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	35, 272, 273
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	1186
AvaII	GGWCC	1 cut(s)	35
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	2 cut(s)	166, 276
BalI	TGGCCA	1 cut(s)	666
BamHI	GGATCC	1 cut(s)	971
BanI	GGYRCC	1 cut(s)	1109
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	404, 658
BccI	CCATC	7 cut(s)	212, 505, 727, 798, 824, 1084, 1318
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	668
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	1161, 1185
BfaI	CTAG	1 cut(s)	1364
BfmI	CTRYAG	1 cut(s)	1314
BisI	GCNGC	3 cut(s)	393, 672, 750
BlsI	GCNGC	3 cut(s)	394, 673, 751
Bme1390I	CCNGG	2 cut(s)	639, 668
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	3 cut(s)	35, 272, 273
BmiI	GGNNCC	3 cut(s)	274, 973, 1111
BmrFI	CCNGG	2 cut(s)	639, 668
BmrI	ACTGGG	2 cut(s)	270, 1143
BmsI	GCATC	2 cut(s)	404, 911
BmuI	ACTGGG	2 cut(s)	270, 1143
BpiI	GAAGAC	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	639
Bsa29I	ATCGAT	2 cut(s)	207, 905
BsaBI	GATNNNNATC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	1185
BsaWI	WCCGGW	2 cut(s)	37, 989
BsaXI	ACNNNNNCTCC	2 cut(s)	1158, 1188
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 662, 849, 1406
Bse1I	ACTGG	5 cut(s)	200, 276, 607, 691, 1138
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	668
BseCI	ATCGAT	2 cut(s)	207, 905
BseGI	GGATG	3 cut(s)	28, 516, 1329
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	4 cut(s)	44, 662, 849, 1406
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	6 cut(s)	135, 200, 355, 897, 1196, 1283
BseNI	ACTGG	5 cut(s)	200, 276, 607, 691, 1138
BseRI	GAGGAG	2 cut(s)	222, 906
BseSI	GKGCMC	2 cut(s)	166, 276
BseXI	GCAGC	2 cut(s)	404, 658
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	5 cut(s)	184, 274, 666, 690, 917
BshNI	GGYRCC	1 cut(s)	1109
BshVI	ATCGAT	2 cut(s)	207, 905
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	38, 639, 990
BslFI	GGGAC	3 cut(s)	62, 528, 621
BslI	CCNNNNNNNGG	4 cut(s)	44, 662, 849, 1406
BsmAI	GTCTC	2 cut(s)	1161, 1185
BsmFI	GGGAC	3 cut(s)	62, 528, 621
BsnI	GGCC	5 cut(s)	184, 274, 666, 690, 917
Bso31I	GGTCTC	1 cut(s)	1185
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	166, 276
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	28, 263, 971, 1328
BspACI	CCGC	5 cut(s)	45, 417, 446, 749, 975
BspANI	GGCC	5 cut(s)	184, 274, 666, 690, 917
BspCNI	CTCAG	6 cut(s)	136, 199, 354, 896, 1195, 1284
BspDI	ATCGAT	2 cut(s)	207, 905
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	2 cut(s)	225, 802
BspLI	GGNNCC	3 cut(s)	274, 973, 1111
BspPI	GGATC	4 cut(s)	36, 966, 979, 1336
BspT107I	GGYRCC	1 cut(s)	1109
BspTNI	GGTCTC	1 cut(s)	1185
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	213
BsrI	ACTGG	5 cut(s)	200, 276, 607, 691, 1138
BssMI	GATC	4 cut(s)	28, 263, 971, 1328
BssNAI	GTATAC	1 cut(s)	1131
Bst1107I	GTATAC	1 cut(s)	1131
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	3 cut(s)	847, 968, 1360
Bst6I	CTCTTC	1 cut(s)	69
BstAUI	TGTACA	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	8 cut(s)	144, 186, 341, 745, 863, 883, 1182, 1292
BstF5I	GGATG	3 cut(s)	28, 516, 1329
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	4 cut(s)	31, 266, 974, 1331
BstMAI	GTCTC	2 cut(s)	1161, 1185
BstMBI	GATC	4 cut(s)	28, 263, 971, 1328
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 365, 687, 821
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	1 cut(s)	1201
BstSCI	CCNGG	2 cut(s)	637, 666
BstSFI	CTRYAG	1 cut(s)	1314
BstSLI	GKGCMC	2 cut(s)	166, 276
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	404, 658
BstV2I	GAAGAC	1 cut(s)	285
BstX2I	RGATCY	2 cut(s)	28, 971
BstYI	RGATCY	2 cut(s)	28, 971
BstZ17I	GTATAC	1 cut(s)	1131
Bsu15I	ATCGAT	2 cut(s)	207, 905
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	5 cut(s)	184, 274, 666, 690, 917
BsuTUI	ATCGAT	2 cut(s)	207, 905
BtgZI	GCGATG	1 cut(s)	634
BtsCI	GGATG	3 cut(s)	28, 516, 1329
BtsIMutI	CAGTG	3 cut(s)	843, 973, 1047
Cac8I	GCNNGC	1 cut(s)	390
CciI	TCATGA	2 cut(s)	225, 802
CfoI	GCGC	1 cut(s)	45
Cfr13I	GGNCC	3 cut(s)	35, 272, 273
ClaI	ATCGAT	2 cut(s)	207, 905
Csp6I	GTAC	2 cut(s)	214, 482
CviAII	CATG	5 cut(s)	180, 226, 803, 1126, 1198
CviQI	GTAC	2 cut(s)	214, 482
DdeI	CTNAG	8 cut(s)	144, 186, 341, 745, 863, 883, 1182, 1292
DpnI	GATC	4 cut(s)	30, 265, 973, 1330
DpnII	GATC	4 cut(s)	28, 263, 971, 1328
EaeI	YGGCCR	2 cut(s)	664, 688
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EciI	GGCGGA	1 cut(s)	964
Eco24I	GRGCYC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	1185
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	666
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	276
FaeI	CATG	5 cut(s)	183, 229, 806, 1129, 1201
FalI	AAGNNNNNCTT	2 cut(s)	372, 404
FaqI	GGGAC	3 cut(s)	62, 528, 621
FatI	CATG	5 cut(s)	179, 225, 802, 1125, 1197
FauI	CCCGC	1 cut(s)	38
FauNDI	CATATG	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	1130
Fnu4HI	GCNGC	3 cut(s)	393, 672, 750
FokI	GGATG	3 cut(s)	35, 523, 1336
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	3 cut(s)	393, 672, 750
FspBI	CTAG	1 cut(s)	1364
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	393, 672, 750
HaeIII	GGCC	5 cut(s)	184, 274, 666, 690, 917
HapII	CCGG	3 cut(s)	38, 639, 990
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	183, 229, 806, 1129, 1201
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	8 cut(s)	125, 229, 492, 642, 786, 826, 907, 1169
HpaII	CCGG	3 cut(s)	38, 639, 990
HphI	GGTGA	1 cut(s)	1186
Hpy166II	GTNNAC	6 cut(s)	164, 216, 946, 1131, 1188, 1249
Hpy188I	TCNGA	6 cut(s)	112, 130, 189, 364, 647, 1293
Hpy188III	TCNNGA	5 cut(s)	226, 267, 656, 803, 1234
Hpy8I	GTNNAC	6 cut(s)	164, 216, 946, 1131, 1188, 1249
HpyAV	CCTTC	6 cut(s)	117, 246, 251, 255, 377, 539
HpyCH4III	ACNGT	3 cut(s)	847, 968, 1360
HpyCH4V	TGCA	8 cut(s)	164, 179, 392, 536, 575, 782, 902, 1229
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 365, 687, 821
HpyF3I	CTNAG	8 cut(s)	144, 186, 341, 745, 863, 883, 1182, 1292
Hsp92II	CATG	5 cut(s)	183, 229, 806, 1129, 1201
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	28, 263, 971, 1328
LmnI	GCTCC	2 cut(s)	40, 290
Lsp1109I	GCAGC	2 cut(s)	404, 658
LweI	GCATC	2 cut(s)	404, 911
MaeI	CTAG	1 cut(s)	1364
MaeIII	GTNAC	1 cut(s)	1000
MalI	GATC	4 cut(s)	30, 265, 973, 1330
MboI	GATC	4 cut(s)	28, 263, 971, 1328
MboII	GAAGA	7 cut(s)	86, 285, 324, 785, 830, 1114, 1217
MfeI	CAATTG	2 cut(s)	1005, 1242
MflI	RGATCY	2 cut(s)	28, 971
MhlI	GDGCHC	2 cut(s)	166, 276
MlsI	TGGCCA	1 cut(s)	666
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	4 cut(s)	223, 636, 820, 1163
MmeI	TCCRAC	1 cut(s)	868
Mox20I	TGGCCA	1 cut(s)	666
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	1308
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	5 cut(s)	62, 303, 614, 695, 980
MslI	CAYNNNNRTG	3 cut(s)	209, 966, 1064
Msp20I	TGGCCA	1 cut(s)	666
MspI	CCGG	3 cut(s)	38, 639, 990
MspR9I	CCNGG	2 cut(s)	639, 668
MunI	CAATTG	2 cut(s)	1005, 1242
MvaI	CCWGG	1 cut(s)	668
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	161, 365, 687, 821
NciI	CCSGG	1 cut(s)	639
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	4 cut(s)	28, 263, 971, 1328
NlaIII	CATG	5 cut(s)	183, 229, 806, 1129, 1201
NlaIV	GGNNCC	3 cut(s)	274, 973, 1111
NmuCI	GTSAC	1 cut(s)	1000
NsiI	ATGCAT	1 cut(s)	181
NspI	RCATGY	1 cut(s)	1201
PagI	TCATGA	2 cut(s)	225, 802
PdmI	GAANNNNTTC	1 cut(s)	1308
PfeI	GAWTC	4 cut(s)	125, 492, 786, 907
PflMI	CCANNNNNTGG	3 cut(s)	662, 849, 1406
PfoI	TCCNGGA	1 cut(s)	637
PkrI	GCNGC	3 cut(s)	394, 673, 751
PleI	GAGTC	4 cut(s)	223, 636, 820, 1163
PpsI	GAGTC	4 cut(s)	223, 636, 820, 1163
PshBI	ATTAAT	1 cut(s)	614
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	274, 973, 1111
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	3 cut(s)	35, 272, 273
PsuI	RGATCY	2 cut(s)	28, 971
RsaI	GTAC	2 cut(s)	215, 483
RsaNI	GTAC	2 cut(s)	214, 482
RseI	CAYNNNNRTG	3 cut(s)	209, 966, 1064
SaqAI	TTAA	5 cut(s)	62, 303, 614, 695, 980
SatI	GCNGC	3 cut(s)	393, 672, 750
Sau3AI	GATC	4 cut(s)	28, 263, 971, 1328
Sau96I	GGNCC	3 cut(s)	35, 272, 273
SchI	GAGTC	4 cut(s)	223, 636, 820, 1163
ScrFI	CCNGG	2 cut(s)	639, 668
SduI	GDGCHC	2 cut(s)	166, 276
SfaNI	GCATC	2 cut(s)	404, 911
SfcI	CTRYAG	1 cut(s)	1314
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	3 cut(s)	209, 966, 1064
SsiI	CCGC	5 cut(s)	45, 417, 446, 749, 975
SspI	AATATT	1 cut(s)	756
SspMI	CTAG	1 cut(s)	1364
StyD4I	CCNGG	2 cut(s)	637, 666
TaaI	ACNGT	3 cut(s)	847, 968, 1360
TaqI	TCGA	2 cut(s)	207, 905
TatI	WGTACW	2 cut(s)	213, 481
TauI	GCSGC	1 cut(s)	752
TfiI	GAWTC	4 cut(s)	125, 492, 786, 907
Tru1I	TTAA	5 cut(s)	62, 303, 614, 695, 980
Tru9I	TTAA	5 cut(s)	62, 303, 614, 695, 980
TscAI	CASTG	3 cut(s)	850, 973, 1047
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	2 cut(s)	392, 671
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	5 cut(s)	87, 456, 819, 950, 1114
TspRI	CASTG	3 cut(s)	850, 973, 1047
Van91I	CCANNNNNTGG	3 cut(s)	662, 849, 1406
VneI	GTGCAC	1 cut(s)	162
VpaK11BI	GGWCC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	614
XapI	RAATTY	4 cut(s)	424, 606, 807, 1208
XceI	RCATGY	1 cut(s)	1201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XmiI	GTMKAC	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	1308
XspI	CTAG	1 cut(s)	1364
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.