Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Forward (+)

2956156 .. 2958330

Gene Structure 2175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGTGAAGAAGAGTTACCCGGAAGTGAAAGAAGAGTACAAGAAAGCTGTTCAGAGATGCAAGAGGAAGCTCCGTGGTCTTATTGCCGAGAAGCACTGTGCTCCCATCGTCCTCCGTCTTGCATGGCACTCGGCTGGGACATTTGATGTGAAGACGAAGACAGGAGGACCGTTTGGGACGATAAGGCATCCCCAAGAGCTAGCCCATGATGCCAACAATGGTCTTGATATTGCCGTTAGGCTTCTTGACCCTATCAAGGAGCTGTTCCCTATTCTGTCATATGCTGACTTCTACCAGCTAGCTGGAGTAGTTGCTGTTGAGATCACTGGAGGACCAGAGATTCCATTTCATCCTGGTAGACTGGACAAAGTTGAGCCACCTCCTGAAGGTCGTCTGCCTCAGGCCACCAAAGGTGTGGATCATCTAAGAGATGTGTTTGGTCGGATGGGACTCAATGACAAAGATATCGTTGCATTGTCTGGTGGACACACCTTGGGTCGGTGCCACAAGGAGCGTTCAGGATTCGAGGGTGCATGGACACCAAACCCGCTCATTTTTGACAACTCCTATTTCAAAGAGATACTAAGCGGAGAGAAAGAAGGACTTCTTCAACTACCAACCGACAAGGCTCTTCTTGATGATCCTCTCTTTCTCCCATTTGTTGAAAAATATGCTGCAGATGAGGATGCCTTCTTCGAAGACTATACGGAAGCTCATCTAAAGTTGTCAGAACTCGGGTTTGCTGACAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009636 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0012505 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0022414 GO:0030054 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0061458 GO:0070887 GO:0071944 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

251

Amino Acids

28.01

Weight (kDa)

5.88

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	23 - 227	6.2e-45	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	501
AccBSI	CCGCTC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	358
AciI	CCGC	2 cut(s)	548, 588
AclWI	GGATC	2 cut(s)	426, 635
AcuI	CTGAAG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	3 cut(s)	256, 386, 498
AgsI	TTSAA	3 cut(s)	574, 611, 665
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	7 cut(s)	47, 70, 199, 262, 298, 302, 713
AluI	AGCT	7 cut(s)	47, 70, 199, 262, 298, 302, 713
Alw21I	GWGCWC	1 cut(s)	103
AlwI	GGATC	2 cut(s)	426, 635
Ama87I	CYCGRG	1 cut(s)	734
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	167, 332
AsuC2I	CCSGG	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	696
AsuNHI	GCTAGC	2 cut(s)	199, 298
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	2 cut(s)	167, 332
AxyI	CCTNAGG	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	501
BarI	GAAGNNNNNNTAC	1 cut(s)	31
BbsI	GAAGAC	3 cut(s)	158, 164, 705
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	2 cut(s)	113, 439
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciT130I	CCWGG	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	20
BfaI	CTAG	2 cut(s)	200, 299
BfmI	CTRYAG	1 cut(s)	675
BisI	GCNGC	1 cut(s)	675
BlsI	GCNGC	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	20, 354
Bme18I	GGWCC	2 cut(s)	167, 332
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	2 cut(s)	167, 332
BmiI	GGNNCC	1 cut(s)	503
BmrFI	CCNGG	2 cut(s)	20, 354
BmsI	GCATC	4 cut(s)	47, 196, 199, 676
BmtI	GCTAGC	2 cut(s)	203, 302
BpiI	GAAGAC	3 cut(s)	158, 164, 705
BpmI	CTGGAG	2 cut(s)	324, 348
Bpu14I	TTCGAA	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	73, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 386, 498
Bse1I	ACTGG	2 cut(s)	331, 366
Bse21I	CCTNAGG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	73, 492
BseGI	GGATG	4 cut(s)	187, 349, 450, 691
BseLI	CCNNNNNNNGG	3 cut(s)	256, 386, 498
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	331, 366
BseXI	GCAGC	1 cut(s)	661
BseYI	CCCAGC	1 cut(s)	134
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	3 cut(s)	151, 190, 462
BslI	CCNNNNNNNGG	3 cut(s)	256, 386, 498
BsmFI	GGGAC	3 cut(s)	151, 190, 462
BsnI	GGCC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	734
Bsp119I	TTCGAA	1 cut(s)	696
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	3 cut(s)	321, 418, 640
BspACI	CCGC	2 cut(s)	548, 588
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	503
BspMAI	CTGCAG	1 cut(s)	679
BspOI	GCTAGC	2 cut(s)	203, 302
BspPI	GGATC	2 cut(s)	426, 635
BspQI	GCTCTTC	1 cut(s)	636
BspT104I	TTCGAA	1 cut(s)	696
BspT107I	GGYRCC	1 cut(s)	501
BsrBI	CCGCTC	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	331, 366
BssECI	CCNNGG	2 cut(s)	73, 492
BssMI	GATC	3 cut(s)	321, 418, 640
BssT1I	CCWWGG	1 cut(s)	492
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	98, 171
Bst6I	CTCTTC	3 cut(s)	5, 27, 636
BstBI	TTCGAA	1 cut(s)	696
BstC8I	GCNNGC	2 cut(s)	201, 300
BstDEI	CTNAG	3 cut(s)	399, 425, 584
BstDSI	CCRYGG	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	4 cut(s)	187, 349, 450, 691
BstKTI	GATC	3 cut(s)	324, 421, 643
BstMBI	GATC	3 cut(s)	321, 418, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	18, 352
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	1 cut(s)	661
BstV2I	GAAGAC	3 cut(s)	158, 164, 705
BstXI	CCANNNNNNTGG	2 cut(s)	302, 415
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	187, 349, 450, 691
BtsIMutI	CAGTG	2 cut(s)	94, 324
Cac8I	GCNNGC	2 cut(s)	201, 300
Cfr13I	GGNCC	2 cut(s)	167, 332
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	3 cut(s)	123, 206, 534
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	399, 425, 584
DpnI	GATC	3 cut(s)	323, 420, 642
DpnII	GATC	3 cut(s)	321, 418, 640
Eam1104I	CTCTTC	3 cut(s)	5, 27, 636
EarI	CTCTTC	3 cut(s)	5, 27, 636
Eco130I	CCWWGG	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	167, 332
Eco57I	CTGAAG	1 cut(s)	405
Eco81I	CCTNAGG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	734
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	352
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
FaeI	CATG	3 cut(s)	126, 209, 537
FaiI	YATR	7 cut(s)	124, 207, 280, 282, 535, 672, 705
FalI	AAGNNNNNCTT	4 cut(s)	588, 620, 591, 623
FaqI	GGGAC	3 cut(s)	151, 190, 462
FatI	CATG	3 cut(s)	122, 205, 533
FauI	CCCGC	1 cut(s)	555
FauNDI	CATATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	1 cut(s)	675
FokI	GGATG	4 cut(s)	174, 336, 457, 698
Fsp4HI	GCNGC	1 cut(s)	675
FspBI	CTAG	2 cut(s)	200, 299
GluI	GCNGC	1 cut(s)	675
GsaI	CCCAGC	1 cut(s)	138
GsuI	CTGGAG	2 cut(s)	324, 348
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	20
Hin1II	CATG	3 cut(s)	126, 209, 537
HinfI	GANTC	3 cut(s)	340, 450, 522
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	359, 485
Hpy188I	TCNGA	3 cut(s)	54, 444, 730
Hpy188III	TCNNGA	5 cut(s)	224, 245, 383, 519, 635
Hpy8I	GTNNAC	2 cut(s)	359, 485
HpyAV	CCTTC	3 cut(s)	380, 593, 700
HpyCH4III	ACNGT	2 cut(s)	98, 171
HpyCH4V	TGCA	5 cut(s)	60, 122, 473, 533, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	399, 425, 584
Hsp92II	CATG	3 cut(s)	126, 209, 537
Kzo9I	GATC	3 cut(s)	321, 418, 640
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	4 cut(s)	75, 106, 259, 511
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	4 cut(s)	47, 196, 199, 676
MaeI	CTAG	2 cut(s)	200, 299
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	323, 420, 642
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	3 cut(s)	321, 418, 640
MboII	GAAGA	9 cut(s)	19, 22, 44, 163, 169, 599, 623, 685, 710
MhlI	GDGCHC	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	444
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	9 cut(s)	57, 122, 158, 323, 390, 408, 520, 654, 676
MroXI	GAANNNNTTC	1 cut(s)	603
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	20, 354
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	1 cut(s)	209
NciI	CCSGG	1 cut(s)	20
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	3 cut(s)	321, 418, 640
NheI	GCTAGC	2 cut(s)	199, 298
NlaIII	CATG	3 cut(s)	126, 209, 537
NlaIV	GGNNCC	1 cut(s)	503
NmeAIII	GCCGAG	2 cut(s)	110, 112
NspV	TTCGAA	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	340, 522
PkrI	GCNGC	1 cut(s)	676
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	503
PspPI	GGNCC	2 cut(s)	167, 332
PstI	CTGCAG	1 cut(s)	679
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SapI	GCTCTTC	1 cut(s)	636
SatI	GCNGC	1 cut(s)	675
Sau3AI	GATC	3 cut(s)	321, 418, 640
Sau96I	GGNCC	2 cut(s)	167, 332
SchI	GAGTC	1 cut(s)	444
ScrFI	CCNGG	2 cut(s)	20, 354
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	4 cut(s)	47, 196, 199, 676
SfcI	CTRYAG	1 cut(s)	675
SfuI	TTCGAA	1 cut(s)	696
SinI	GGWCC	2 cut(s)	167, 332
SsiI	CCGC	2 cut(s)	548, 588
SspMI	CTAG	2 cut(s)	200, 299
StyD4I	CCNGG	2 cut(s)	18, 352
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	98, 171
TaqI	TCGA	2 cut(s)	525, 696
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	340, 522
TscAI	CASTG	2 cut(s)	101, 331
TseI	GCWGC	1 cut(s)	674
TspDTI	ATGAA	1 cut(s)	338
TspGWI	ACGGA	3 cut(s)	62, 104, 722
TspRI	CASTG	2 cut(s)	101, 331
VpaK11BI	GGWCC	2 cut(s)	167, 332
XagI	CCTNNNNNAGG	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	412
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	2 cut(s)	200, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.