Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Forward (+)

13471281 .. 13473803

Gene Structure 2523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGGGAAGTGTTATCCAACTGTGAGCGAGGAGTACCAGAAAGCGGTTGAGAAATGCAAGAGAAAGCTGAGAGGACTCATCCAAGAGAAGCACTGCGCTCCTATAATTCTCCGAGTGGCGTGGCACTCGGCTGGGACGTTCGATGTGGCAACGAAGACCGGAGGACCGTTCGGGACGATCAGGGACCCGGCGGTGCTGGCTCATGAAGCAAACAAGGGACTCGAGATTGCAGTCAGGATTTTGGAGCCGATCAAGGAGCAGTTTCCGATTCTCTCATATGCAGACTTCTACCAGTTGGCTGGAGTAGTAGCTGTAGAAGTAACAGGAGGGCCCGAGATTCCTTTCCACCCTGAAGAAGCACCACCGGAAGGTCGCTTGCCTAATGCCAACAAAGGTGTGGATCATTTGAGGGATGTGTTTGGCCATATGGGTCTCAGTGACAAGGACATTGTTGCATTATCTGGTGGACACACCTTGGGTAGGTGCCACAAGGAGCGCTCTGGATTTGAGGGACCCTGGACAACCAATCCCCTCATTTTCGACAACTCCTATTTCAAGGAACTTATTAGTGGAGAGAAGGAAGGTCTGATCCAGCTTCCATCAGATAAGGCTCTTCTTGAGGATCCAGTTTTTCGTACTTTTGTCGAGACCTATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCTCATTTGAAGCTTTCAGAGCTTGGATTTGCAGATACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

245

Amino Acids

27.01

Weight (kDa)

5.24

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	24 - 221	1.1e-36	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	483
AciI	CCGC	3 cut(s)	44, 191, 659
AclWI	GGATC	4 cut(s)	408, 583, 617, 630
AcoI	YGGCCR	1 cut(s)	421
AcuI	CTGAAG	2 cut(s)	372, 711
AfaI	GTAC	2 cut(s)	35, 637
AfeI	AGCGCT	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	43, 368, 480
AgsI	TTSAA	2 cut(s)	556, 703
AjnI	CCWGG	1 cut(s)	515
AluBI	AGCT	6 cut(s)	67, 311, 595, 695, 706, 715
AluI	AGCT	6 cut(s)	67, 311, 595, 695, 706, 715
Alw26I	GTCTC	2 cut(s)	437, 641
AlwI	GGATC	4 cut(s)	408, 583, 617, 630
Ama87I	CYCGRG	2 cut(s)	221, 332
Aor51HI	AGCGCT	1 cut(s)	497
AoxI	GGCC	2 cut(s)	329, 421
ApaI	GGGCCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	656
AspLEI	GCGC	2 cut(s)	98, 498
AspS9I	GGNCC	5 cut(s)	164, 184, 329, 330, 512
AsuC2I	CCSGG	1 cut(s)	188
AvaI	CYCGRG	2 cut(s)	221, 332
AvaII	GGWCC	3 cut(s)	164, 184, 512
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	643
BccI	CCATC	1 cut(s)	607
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	1 cut(s)	517
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	437, 641
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	499
BisI	GCNGC	1 cut(s)	657
BlsI	GCNGC	1 cut(s)	658
Bme1390I	CCNGG	2 cut(s)	188, 517
Bme18I	GGWCC	3 cut(s)	164, 184, 512
BmeT110I	CYCGRG	2 cut(s)	221, 332
BmgT120I	GGNCC	5 cut(s)	164, 184, 329, 330, 512
BmiI	GGNNCC	8 cut(s)	185, 186, 246, 331, 485, 513, 514, 624
BmrFI	CCNGG	2 cut(s)	188, 517
BmsI	GCATC	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	2 cut(s)	437, 641
BsaJI	CCNNGG	2 cut(s)	474, 515
BsaWI	WCCGGW	2 cut(s)	158, 364
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 368, 480
Bse1I	ACTGG	2 cut(s)	292, 626
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	474, 515
BseGI	GGATG	4 cut(s)	78, 418, 667, 673
BseLI	CCNNNNNNNGG	3 cut(s)	43, 368, 480
BseMII	CTCAG	2 cut(s)	59, 448
BseNI	ACTGG	2 cut(s)	292, 626
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	643
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	2 cut(s)	331, 423
BshNI	GGYRCC	1 cut(s)	483
BsiHKCI	CYCGRG	2 cut(s)	221, 332
BsiSI	CCGG	3 cut(s)	159, 188, 365
BslFI	GGGAC	5 cut(s)	148, 187, 197, 231, 525
BslI	CCNNNNNNNGG	3 cut(s)	43, 368, 480
BsmAI	GTCTC	2 cut(s)	437, 641
BsmFI	GGGAC	5 cut(s)	148, 187, 197, 231, 525
BsnI	GGCC	2 cut(s)	331, 423
Bso31I	GGTCTC	2 cut(s)	437, 641
BsoBI	CYCGRG	2 cut(s)	221, 332
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	177, 249, 400, 588, 622
BspACI	CCGC	3 cut(s)	44, 191, 659
BspANI	GGCC	2 cut(s)	331, 423
BspCNI	CTCAG	2 cut(s)	60, 447
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	8 cut(s)	185, 186, 246, 331, 485, 513, 514, 624
BspPI	GGATC	4 cut(s)	408, 583, 617, 630
BspQI	GCTCTTC	1 cut(s)	618
BspT107I	GGYRCC	1 cut(s)	483
BspTNI	GGTCTC	2 cut(s)	437, 641
BsrI	ACTGG	2 cut(s)	292, 626
BssECI	CCNNGG	2 cut(s)	474, 515
BssMI	GATC	5 cut(s)	177, 249, 400, 588, 622
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	22, 168
Bst6I	CTCTTC	1 cut(s)	618
BstC8I	GCNNGC	2 cut(s)	198, 377
BstDEI	CTNAG	2 cut(s)	68, 434
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	4 cut(s)	78, 418, 667, 673
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	98, 498
BstKTI	GATC	5 cut(s)	180, 252, 403, 591, 625
BstMAI	GTCTC	2 cut(s)	437, 641
BstMBI	GATC	5 cut(s)	177, 249, 400, 588, 622
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 206, 677, 686, 712
BstNI	CCWGG	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	186, 515
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	643
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	622
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	622
BsuRI	GGCC	2 cut(s)	331, 423
BtsCI	GGATG	4 cut(s)	78, 418, 667, 673
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	91, 442
Cac8I	GCNNGC	2 cut(s)	198, 377
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	98, 498
Cfr13I	GGNCC	5 cut(s)	164, 184, 329, 330, 512
Csp6I	GTAC	2 cut(s)	34, 636
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	2 cut(s)	34, 636
DdeI	CTNAG	2 cut(s)	68, 434
DpnI	GATC	5 cut(s)	179, 251, 402, 590, 624
DpnII	GATC	5 cut(s)	177, 249, 400, 588, 622
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	2 cut(s)	437, 641
Eco47I	GGWCC	3 cut(s)	164, 184, 512
Eco47III	AGCGCT	1 cut(s)	497
Eco57I	CTGAAG	2 cut(s)	372, 711
Eco88I	CYCGRG	2 cut(s)	221, 332
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoO109I	RGGNCCY	3 cut(s)	184, 329, 512
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	474
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	104, 204, 277, 279, 426, 428, 654, 687
FaqI	GGGAC	5 cut(s)	148, 187, 197, 231, 525
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	2 cut(s)	277, 426
Fnu4HI	GCNGC	1 cut(s)	657
FokI	GGATG	4 cut(s)	65, 425, 674, 680
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	657
GlaI	GCGC	2 cut(s)	97, 497
GluI	GCNGC	1 cut(s)	657
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	499
HaeIII	GGCC	2 cut(s)	331, 423
HapII	CCGG	3 cut(s)	159, 188, 365
HhaI	GCGC	2 cut(s)	98, 498
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	96, 496
HinP1I	GCGC	2 cut(s)	96, 496
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	4 cut(s)	75, 219, 268, 337
HpaII	CCGG	3 cut(s)	159, 188, 365
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	5 cut(s)	113, 267, 588, 604, 712
Hpy188III	TCNNGA	7 cut(s)	172, 203, 223, 235, 501, 617, 646
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	3 cut(s)	362, 571, 575
HpyCH4III	ACNGT	2 cut(s)	22, 168
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	57, 230, 281, 455, 725
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 206, 677, 686, 712
HpyF3I	CTNAG	2 cut(s)	68, 434
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	96, 496
KflI	GGGWCCC	2 cut(s)	184, 512
Kzo9I	GATC	5 cut(s)	177, 249, 400, 588, 622
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	4 cut(s)	103, 244, 256, 493
Lsp1109I	GCAGC	1 cut(s)	643
LweI	GCATC	1 cut(s)	658
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	319, 437
MalI	GATC	5 cut(s)	179, 251, 402, 590, 624
MboI	GATC	5 cut(s)	177, 249, 400, 588, 622
MboII	GAAGA	3 cut(s)	166, 365, 605
MflI	RGATCY	1 cut(s)	622
MhlI	GDGCHC	1 cut(s)	333
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	69, 213
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	22, 65, 155, 320, 402, 502, 542, 613, 658
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	3 cut(s)	159, 188, 365
MspR9I	CCNGG	2 cut(s)	188, 517
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	5 cut(s)	197, 206, 677, 686, 712
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	2 cut(s)	277, 426
NdeII	GATC	5 cut(s)	177, 249, 400, 588, 622
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	8 cut(s)	185, 186, 246, 331, 485, 513, 514, 624
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	268, 337
PkrI	GCNGC	1 cut(s)	658
PleI	GAGTC	2 cut(s)	69, 213
PpsI	GAGTC	2 cut(s)	69, 213
PpuMI	RGGWCCY	2 cut(s)	184, 512
Psp5II	RGGWCCY	2 cut(s)	184, 512
Psp6I	CCWGG	1 cut(s)	515
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	8 cut(s)	185, 186, 246, 331, 485, 513, 514, 624
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	5 cut(s)	164, 184, 329, 330, 512
PspPPI	RGGWCCY	2 cut(s)	184, 512
PsuI	RGATCY	1 cut(s)	622
RsaI	GTAC	2 cut(s)	35, 637
RsaNI	GTAC	2 cut(s)	34, 636
SapI	GCTCTTC	1 cut(s)	618
SatI	GCNGC	1 cut(s)	657
Sau3AI	GATC	5 cut(s)	177, 249, 400, 588, 622
Sau96I	GGNCC	5 cut(s)	164, 184, 329, 330, 512
SchI	GAGTC	2 cut(s)	69, 213
ScrFI	CCNGG	2 cut(s)	188, 517
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	3 cut(s)	164, 184, 512
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	221, 617
SmoI	CTYRAG	2 cut(s)	221, 617
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	3 cut(s)	44, 191, 659
StyD4I	CCNGG	2 cut(s)	186, 515
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	22, 168
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	4 cut(s)	141, 222, 540, 645
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	268, 337
TscAI	CASTG	2 cut(s)	98, 442
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	656
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	98, 442
VpaK11BI	GGWCC	3 cut(s)	164, 184, 512
XagI	CCTNNNNNAGG	1 cut(s)	478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.