Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Reverse (-)

19256115 .. 19259248

Gene Structure 3134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1104900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAGCGAGGAATACCAGAAGGCAGTAGAAAAATGCAAAAGAAAACTCCGAGGGCTCATCACTGAGAAGAACTGCGCTCCTATAATTCTCCGATTAGCATGGCACTCAGCTGGTACGTTTGACATAGAAACGAAGACTGGAGGACCATTTGGGACCATCAGGCACCCGGAGGAGCTCGCTCATGAAGCAAACAATGGTCTTGATATTGCGGTTAGGCTTTTGGAGCCGACCAAGGAGCAGTTTCCGATCCTCTCATATGCAGACTTCTACCAGTTGGCTGGAGTTGTTGCCGTAGAAATAACAGGAGGGCCTGAGATCCCTTTCCACCCTGGTAGACCAGATAAACAAGAACCACCACCAGAAGGTCGTTTGCCAAATGCCACCGAAGGTTCGGATCATCTGAGGGCTGTCTTTGGACACATGGGACTTAGCGACAAGGACATTGTTGCATTATCCGGTGGACACACCTTGGGTAGGTGCCACAAGGAGCGTTCTGGATTTGAGGGACCCTGGACAACGAACCCTCTCATCTTCGACAACTCCTATTTCAAGGAACTTCTTAGTGGGGAGAAAGAAGGTCTTCTTCAGCTGCCATCGGATAAAGCTCTACTCGAGGATCCAGTCTTTCGCCCTCTTGTAGAGACTTATGCTGCGGACGAAGACGCCTTCTTTGCTGATTATGCCGAAGCACATTTGAAACTCTCCGAGCTTGGATTTGCGGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

243

Amino Acids

26.7

Weight (kDa)

5.08

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	18 - 219	7.1e-45	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	162, 477
AccI	GTMKAC	1 cut(s)	334
AciI	CCGC	3 cut(s)	209, 653, 719
AclWI	GGATC	5 cut(s)	241, 310, 402, 611, 624
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	663
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	362, 474
AgsI	TTSAA	2 cut(s)	550, 697
AjnI	CCWGG	2 cut(s)	328, 509
AluBI	AGCT	5 cut(s)	110, 175, 589, 605, 709
AluI	AGCT	5 cut(s)	110, 175, 589, 605, 709
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	5 cut(s)	241, 310, 402, 611, 624
Ama87I	CYCGRG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	589, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	4 cut(s)	143, 153, 308, 506
AsuC2I	CCSGG	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	611
AvaII	GGWCC	3 cut(s)	143, 153, 506
BamHI	GGATCC	1 cut(s)	616
BanI	GGYRCC	2 cut(s)	162, 477
BanII	GRGCYC	2 cut(s)	57, 177
BbsI	GAAGAC	3 cut(s)	140, 572, 666
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	576, 637
BccI	CCATC	2 cut(s)	164, 601
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	330, 511
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	635
BisI	GCNGC	2 cut(s)	590, 651
BlsI	GCNGC	2 cut(s)	591, 652
Bme1390I	CCNGG	3 cut(s)	167, 330, 511
Bme18I	GGWCC	3 cut(s)	143, 153, 506
BmeT110I	CYCGRG	1 cut(s)	611
BmgT120I	GGNCC	4 cut(s)	143, 153, 308, 506
BmiI	GGNNCC	7 cut(s)	154, 164, 225, 479, 507, 508, 618
BmrFI	CCNGG	3 cut(s)	167, 330, 511
BmsI	GCATC	1 cut(s)	712
BpiI	GAAGAC	3 cut(s)	140, 572, 666
BpmI	CTGGAG	2 cut(s)	159, 300
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	663
BsaJI	CCNNGG	5 cut(s)	49, 231, 328, 468, 509
BsaWI	WCCGGW	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 474
Bse1I	ACTGG	3 cut(s)	142, 271, 620
BseBI	CCWGG	2 cut(s)	330, 511
BseDI	CCNNGG	5 cut(s)	49, 231, 328, 468, 509
BseGI	GGATG	1 cut(s)	727
BseLI	CCNNNNNNNGG	2 cut(s)	362, 474
BseMII	CTCAG	4 cut(s)	54, 120, 303, 392
BseNI	ACTGG	3 cut(s)	142, 271, 620
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	2 cut(s)	576, 637
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	2 cut(s)	162, 477
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	611
BsiSI	CCGG	2 cut(s)	167, 456
BslFI	GGGAC	3 cut(s)	166, 438, 519
BslI	CCNNNNNNNGG	2 cut(s)	362, 474
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	3 cut(s)	166, 438, 519
BsnI	GGCC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	611
Bsp1286I	GDGCHC	2 cut(s)	57, 177
Bsp143I	GATC	4 cut(s)	246, 315, 394, 616
BspACI	CCGC	3 cut(s)	209, 653, 719
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	4 cut(s)	55, 119, 304, 393
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	7 cut(s)	154, 164, 225, 479, 507, 508, 618
BspPI	GGATC	5 cut(s)	241, 310, 402, 611, 624
BspT107I	GGYRCC	2 cut(s)	162, 477
BsrI	ACTGG	3 cut(s)	142, 271, 620
BssECI	CCNNGG	5 cut(s)	49, 231, 328, 468, 509
BssMI	GATC	4 cut(s)	246, 315, 394, 616
BssNI	GRCGYC	1 cut(s)	663
BssT1I	CCWWGG	2 cut(s)	231, 468
Bst2UI	CCWGG	2 cut(s)	330, 511
BstACI	GRCGYC	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	7 cut(s)	63, 106, 312, 401, 428, 560, 726
BstENI	CCTNNNNNAGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	4 cut(s)	249, 318, 397, 619
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	4 cut(s)	246, 315, 394, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 223, 671, 680
BstNI	CCWGG	2 cut(s)	330, 511
BstSCI	CCNGG	3 cut(s)	165, 328, 509
BstV1I	GCAGC	2 cut(s)	576, 637
BstV2I	GAAGAC	3 cut(s)	140, 572, 666
BstX2I	RGATCY	2 cut(s)	315, 616
BstXI	CCANNNNNNTGG	1 cut(s)	278
BstYI	RGATCY	2 cut(s)	315, 616
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	77
Cfr13I	GGNCC	4 cut(s)	143, 153, 308, 506
CseI	GACGC	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	3 cut(s)	99, 182, 421
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	7 cut(s)	63, 106, 312, 401, 428, 560, 726
DpnI	GATC	4 cut(s)	248, 317, 396, 618
DpnII	GATC	4 cut(s)	246, 315, 394, 616
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	231, 468
Eco24I	GRGCYC	2 cut(s)	57, 177
Eco47I	GGWCC	3 cut(s)	143, 153, 506
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	611
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	472
EcoO109I	RGGNCCY	2 cut(s)	308, 506
EcoRII	CCWGG	2 cut(s)	328, 509
EcoT14I	CCWWGG	2 cut(s)	231, 468
EcoT38I	GRGCYC	2 cut(s)	57, 177
ErhI	CCWWGG	2 cut(s)	231, 468
FaeI	CATG	3 cut(s)	102, 185, 424
FaiI	YATR	9 cut(s)	83, 100, 125, 183, 256, 258, 422, 648, 681
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 567, 599
FaqI	GGGAC	3 cut(s)	166, 438, 519
FatI	CATG	3 cut(s)	98, 181, 420
FauNDI	CATATG	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	590, 651
FriOI	GRGCYC	2 cut(s)	57, 177
Fsp4HI	GCNGC	2 cut(s)	590, 651
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	2 cut(s)	590, 651
GsuI	CTGGAG	2 cut(s)	159, 300
HaeIII	GGCC	1 cut(s)	310
HapII	CCGG	2 cut(s)	167, 456
HgaI	GACGC	1 cut(s)	671
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	663
Hin1II	CATG	3 cut(s)	102, 185, 424
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HpaII	CCGG	2 cut(s)	167, 456
Hpy166II	GTNNAC	2 cut(s)	335, 461
Hpy188I	TCNGA	7 cut(s)	50, 92, 246, 394, 402, 598, 706
Hpy188III	TCNNGA	3 cut(s)	182, 200, 495
Hpy8I	GTNNAC	2 cut(s)	335, 461
HpyAV	CCTTC	5 cut(s)	13, 356, 380, 569, 676
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	3 cut(s)	36, 260, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 223, 671, 680
HpyF3I	CTNAG	7 cut(s)	63, 106, 312, 401, 428, 560, 726
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	663
Hsp92II	CATG	3 cut(s)	102, 185, 424
HspAI	GCGC	1 cut(s)	75
KflI	GGGWCCC	1 cut(s)	506
Kzo9I	GATC	4 cut(s)	246, 315, 394, 616
LmnI	GCTCC	5 cut(s)	82, 172, 223, 235, 487
Lsp1109I	GCAGC	2 cut(s)	576, 637
LweI	GCATC	1 cut(s)	712
MaeII	ACGT	1 cut(s)	116
MalI	GATC	4 cut(s)	248, 317, 396, 618
MboI	GATC	4 cut(s)	246, 315, 394, 616
MboII	GAAGA	6 cut(s)	79, 145, 523, 572, 575, 671
MflI	RGATCY	2 cut(s)	315, 616
MhlI	GDGCHC	2 cut(s)	57, 177
MluCI	AATT	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	579
MspA1I	CMGCKG	2 cut(s)	110, 589
MspI	CCGG	2 cut(s)	167, 456
MspR9I	CCNGG	3 cut(s)	167, 330, 511
MvaI	CCWGG	2 cut(s)	330, 511
MwoI	GCNNNNNNNGC	4 cut(s)	185, 223, 671, 680
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	4 cut(s)	246, 315, 394, 616
NlaIII	CATG	3 cut(s)	102, 185, 424
NlaIV	GGNNCC	7 cut(s)	154, 164, 225, 479, 507, 508, 618
PaeR7I	CTCGAG	1 cut(s)	611
PagI	TCATGA	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	591, 652
PpuMI	RGGWCCY	1 cut(s)	506
Psp124BI	GAGCTC	1 cut(s)	177
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	328, 509
PspGI	CCWGG	2 cut(s)	328, 509
PspN4I	GGNNCC	7 cut(s)	154, 164, 225, 479, 507, 508, 618
PspPI	GGNCC	4 cut(s)	143, 153, 308, 506
PspPPI	RGGWCCY	1 cut(s)	506
PspXI	VCTCGAGB	1 cut(s)	611
PsuI	RGATCY	2 cut(s)	315, 616
PvuII	CAGCTG	2 cut(s)	110, 589
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	177
SatI	GCNGC	2 cut(s)	590, 651
Sau3AI	GATC	4 cut(s)	246, 315, 394, 616
Sau96I	GGNCC	4 cut(s)	143, 153, 308, 506
ScrFI	CCNGG	3 cut(s)	167, 330, 511
SduI	GDGCHC	2 cut(s)	57, 177
SfaNI	GCATC	1 cut(s)	712
Sfr274I	CTCGAG	1 cut(s)	611
SinI	GGWCC	3 cut(s)	143, 153, 506
SlaI	CTCGAG	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	3 cut(s)	209, 653, 719
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	165, 328, 509
StyI	CCWWGG	2 cut(s)	231, 468
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	534, 612
TasI	AATT	1 cut(s)	84
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	2 cut(s)	589, 650
TspDTI	ATGAA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	3 cut(s)	143, 153, 506
XagI	CCTNNNNNAGG	1 cut(s)	472
XhoI	CTCGAG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.