Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Reverse (-)

35704522 .. 35706759

Gene Structure 2238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGGAAGTGTTATCCAACCGTGAGCGAGGAGTACCAGAAAGCGGTTGAGAAATGCAAGAGAAAGCTGAGAGGACTCATCCAAGAGAAGCACTGCGCTCCTATAATTCTCCGAGTGGTGTGGCACTCAGCTGGGACGTTCGATGTGGCAACGAAGACCGGAGGGCCGTTCGGGACGATCAGGGACCCGGCGGTGCTGGCTCATGAAGCAAACAAGGGACTCGAGATTGCAGTCAGGATTTTGGAGCCGATCAAGGAGCAGTTTCCGATTCTCTCATATGCAGACTTCTACCAGTTGGCTGGAGTAGTAGCTGTAGAAGTAACAGGAGGGCCAGAGATTCCTTTCCACCCTGGTAGACCGGACAAAGAAGAAGCACCACCGGAAGGTCGCTTGCCTAATGCCAACAAAGGTGTGGATCATTTGAGGGATGTGTTTGGCCATATGGGTCTTAGTGACAAGGATATTGTTGCATTATCTGGTGGACACACCTTGGGTAGGTGCCACAAGGAGCGCTCTGGATTTGAGGGACCCTGGACAACCAATCCCCTCATTTTCGACAACTCCTATTTCAAGGAACTTATTAGTGGAGAGAAGGAAGGTCTGATCCAGCTTCCATCAGATAAGGCTCTTCTTGAGGATCCAGTTTTTCGTGCTTTTGTCGAGACCTATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCCCATTTGAAGCTTTCAGAGCTTGGATTTGCAGATACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

251

Amino Acids

27.56

Weight (kDa)

5.34

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	24 - 226	6.7e-44	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	3 cut(s)	44, 191, 674
AclWI	GGATC	4 cut(s)	423, 598, 632, 645
AcoI	YGGCCR	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	1 cut(s)	35
AfeI	AGCGCT	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	43, 383, 495
AgsI	TTSAA	2 cut(s)	571, 718
AjnI	CCWGG	2 cut(s)	349, 530
AluBI	AGCT	6 cut(s)	67, 131, 311, 610, 721, 730
AluI	AGCT	6 cut(s)	67, 131, 311, 610, 721, 730
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	4 cut(s)	423, 598, 632, 645
Ama87I	CYCGRG	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	512
AoxI	GGCC	3 cut(s)	164, 329, 436
ApeKI	GCWGC	1 cut(s)	671
AspLEI	GCGC	2 cut(s)	98, 513
AspS9I	GGNCC	4 cut(s)	164, 184, 329, 527
AsuC2I	CCSGG	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	184, 527
BalI	TGGCCA	1 cut(s)	438
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	1 cut(s)	622
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	351, 532
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	656
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	514
BisI	GCNGC	1 cut(s)	672
BlsI	GCNGC	1 cut(s)	673
Bme1390I	CCNGG	3 cut(s)	188, 351, 532
Bme18I	GGWCC	2 cut(s)	184, 527
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	4 cut(s)	164, 184, 329, 527
BmiI	GGNNCC	7 cut(s)	185, 186, 246, 500, 528, 529, 639
BmrFI	CCNGG	3 cut(s)	188, 351, 532
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	3 cut(s)	349, 489, 530
BsaWI	WCCGGW	3 cut(s)	158, 358, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 383, 495
Bse1I	ACTGG	2 cut(s)	292, 641
BseBI	CCWGG	2 cut(s)	351, 532
BseDI	CCNNGG	3 cut(s)	349, 489, 530
BseGI	GGATG	4 cut(s)	78, 433, 682, 688
BseLI	CCNNNNNNNGG	3 cut(s)	43, 383, 495
BseMII	CTCAG	2 cut(s)	59, 141
BseNI	ACTGG	2 cut(s)	292, 641
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	658
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	166, 331, 438
BshNI	GGYRCC	1 cut(s)	498
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	4 cut(s)	159, 188, 359, 380
BslFI	GGGAC	5 cut(s)	148, 187, 197, 231, 540
BslI	CCNNNNNNNGG	3 cut(s)	43, 383, 495
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	5 cut(s)	148, 187, 197, 231, 540
BsnI	GGCC	3 cut(s)	166, 331, 438
Bso31I	GGTCTC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	177, 249, 415, 603, 637
BspACI	CCGC	3 cut(s)	44, 191, 674
BspANI	GGCC	3 cut(s)	166, 331, 438
BspCNI	CTCAG	2 cut(s)	60, 140
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	7 cut(s)	185, 186, 246, 500, 528, 529, 639
BspPI	GGATC	4 cut(s)	423, 598, 632, 645
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	1 cut(s)	498
BspTNI	GGTCTC	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	292, 641
BssECI	CCNNGG	3 cut(s)	349, 489, 530
BssMI	GATC	5 cut(s)	177, 249, 415, 603, 637
BssT1I	CCWWGG	1 cut(s)	489
Bst2UI	CCWGG	2 cut(s)	351, 532
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	198, 392
BstDEI	CTNAG	3 cut(s)	68, 127, 449
BstENI	CCTNNNNNAGG	1 cut(s)	493
BstF5I	GGATG	4 cut(s)	78, 433, 682, 688
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	98, 513
BstKTI	GATC	5 cut(s)	180, 252, 418, 606, 640
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	5 cut(s)	177, 249, 415, 603, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 206, 692, 701, 727
BstNI	CCWGG	2 cut(s)	351, 532
BstSCI	CCNGG	3 cut(s)	186, 349, 530
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	166, 331, 438
BtsCI	GGATG	4 cut(s)	78, 433, 682, 688
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	198, 392
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	98, 513
Cfr13I	GGNCC	4 cut(s)	164, 184, 329, 527
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	68, 127, 449
DpnI	GATC	5 cut(s)	179, 251, 417, 605, 639
DpnII	GATC	5 cut(s)	177, 249, 415, 603, 637
EaeI	YGGCCR	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	184, 527
Eco47III	AGCGCT	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	493
EcoO109I	RGGNCCY	2 cut(s)	184, 527
EcoRII	CCWGG	2 cut(s)	349, 530
EcoT14I	CCWWGG	1 cut(s)	489
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	104, 204, 277, 279, 441, 443, 669, 702
FaqI	GGGAC	5 cut(s)	148, 187, 197, 231, 540
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	2 cut(s)	277, 441
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	672
FokI	GGATG	4 cut(s)	65, 440, 689, 695
Fsp4HI	GCNGC	1 cut(s)	672
GlaI	GCGC	2 cut(s)	97, 512
GluI	GCNGC	1 cut(s)	672
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	166, 331, 438
HapII	CCGG	4 cut(s)	159, 188, 359, 380
HhaI	GCGC	2 cut(s)	98, 513
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	96, 511
HinP1I	GCGC	2 cut(s)	96, 511
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	4 cut(s)	75, 219, 268, 337
HpaII	CCGG	4 cut(s)	159, 188, 359, 380
Hpy166II	GTNNAC	2 cut(s)	356, 482
Hpy188I	TCNGA	5 cut(s)	113, 267, 603, 619, 727
Hpy188III	TCNNGA	7 cut(s)	172, 203, 223, 235, 516, 632, 661
Hpy8I	GTNNAC	2 cut(s)	356, 482
HpyAV	CCTTC	3 cut(s)	377, 586, 590
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	57, 230, 281, 470, 740
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 206, 692, 701, 727
HpyF3I	CTNAG	3 cut(s)	68, 127, 449
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	96, 511
KflI	GGGWCCC	2 cut(s)	184, 527
Kzo9I	GATC	5 cut(s)	177, 249, 415, 603, 637
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	4 cut(s)	103, 244, 256, 508
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	1 cut(s)	673
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	2 cut(s)	319, 452
MalI	GATC	5 cut(s)	179, 251, 417, 605, 639
MboI	GATC	5 cut(s)	177, 249, 415, 603, 637
MboII	GAAGA	3 cut(s)	166, 380, 620
MflI	RGATCY	1 cut(s)	637
MlsI	TGGCCA	1 cut(s)	438
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	69, 213
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	9 cut(s)	22, 65, 155, 320, 417, 517, 557, 628, 673
Mox20I	TGGCCA	1 cut(s)	438
MscI	TGGCCA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	438
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	4 cut(s)	159, 188, 359, 380
MspR9I	CCNGG	3 cut(s)	188, 351, 532
MvaI	CCWGG	2 cut(s)	351, 532
MwoI	GCNNNNNNNGC	5 cut(s)	197, 206, 692, 701, 727
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	2 cut(s)	277, 441
NdeII	GATC	5 cut(s)	177, 249, 415, 603, 637
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	7 cut(s)	185, 186, 246, 500, 528, 529, 639
NmuCI	GTSAC	1 cut(s)	452
PaeR7I	CTCGAG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	268, 337
PkrI	GCNGC	1 cut(s)	673
PleI	GAGTC	2 cut(s)	69, 213
PpsI	GAGTC	2 cut(s)	69, 213
PpuMI	RGGWCCY	2 cut(s)	184, 527
Psp5II	RGGWCCY	2 cut(s)	184, 527
Psp6I	CCWGG	2 cut(s)	349, 530
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	349, 530
PspN4I	GGNNCC	7 cut(s)	185, 186, 246, 500, 528, 529, 639
PspPI	GGNCC	4 cut(s)	164, 184, 329, 527
PspPPI	RGGWCCY	2 cut(s)	184, 527
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	633
SatI	GCNGC	1 cut(s)	672
Sau3AI	GATC	5 cut(s)	177, 249, 415, 603, 637
Sau96I	GGNCC	4 cut(s)	164, 184, 329, 527
SchI	GAGTC	2 cut(s)	69, 213
ScrFI	CCNGG	3 cut(s)	188, 351, 532
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	312
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	184, 527
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	221, 632
SmoI	CTYRAG	2 cut(s)	221, 632
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	3 cut(s)	44, 191, 674
StyD4I	CCNGG	3 cut(s)	186, 349, 530
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	4 cut(s)	141, 222, 555, 660
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	268, 337
TscAI	CASTG	1 cut(s)	98
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	184, 527
XagI	CCTNNNNNAGG	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.