Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Reverse (-)

12758673 .. 12759514

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGACTTAGCGACAAGGACATTGTTGCATTATCCGGTGGACACACCTTGGGTAGGTGCCACAAGGAGCGTTCTGGATTCGAGGGACCCTGGACAACGAACCCTCTCATTTTTGACAACTCCTATTTCAAGGAACTTCTTAGTGGGGAGAAAGAAGGTCTTCTTCAGCTGCCATCAGATAAAGCTCTTCTCGAGGATCCAGTCTTTCACCCTCTTGTTGAGACTTATGCTGCGGACGAAGACGCCTTCTTTGCTGATTATGCCGAAGCACATTTGAAGCTCTCCGAGCTTGGATTTGCGGATGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

104

Amino Acids

11.35

Weight (kDa)

4.5

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	57
AciI	CCGC	2 cut(s)	233, 299
AclWI	GGATC	2 cut(s)	191, 204
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	130, 277
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	169, 185, 280, 289
AluI	AGCT	4 cut(s)	169, 185, 280, 289
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	191, 204
Ama87I	CYCGRG	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	169, 230
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
Asp700I	GAANNNNTTC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	152, 246
BbvI	GCAGC	2 cut(s)	156, 217
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	170, 231
BlsI	GCNGC	2 cut(s)	171, 232
Bme1390I	CCNGG	1 cut(s)	91
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	4 cut(s)	59, 87, 88, 198
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	2 cut(s)	152, 246
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	48, 89
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	48, 89
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	2 cut(s)	156, 217
BshNI	GGYRCC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	2 cut(s)	18, 99
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	2 cut(s)	18, 99
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	2 cut(s)	233, 299
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	4 cut(s)	59, 87, 88, 198
BspPI	GGATC	2 cut(s)	191, 204
BspQI	GCTCTTC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	48, 89
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	8, 140, 306
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 260, 286
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	156, 217
BstV2I	GAAGAC	2 cut(s)	152, 246
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	86
CseI	GACGC	1 cut(s)	251
CviJI	RGCY	4 cut(s)	169, 185, 280, 289
CviKI_1	RGCY	4 cut(s)	169, 185, 280, 289
DdeI	CTNAG	3 cut(s)	8, 140, 306
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	89
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaiI	YATR	2 cut(s)	228, 261
FalI	AAGNNNNNCTT	4 cut(s)	144, 176, 147, 179
FaqI	GGGAC	2 cut(s)	18, 99
Fnu4HI	GCNGC	2 cut(s)	170, 231
Fsp4HI	GCNGC	2 cut(s)	170, 231
GluI	GCNGC	2 cut(s)	170, 231
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	243
HinfI	GANTC	1 cut(s)	78
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	2 cut(s)	178, 286
Hpy188III	TCNNGA	2 cut(s)	75, 191
Hpy8I	GTNNAC	1 cut(s)	41
HpyAV	CCTTC	2 cut(s)	149, 256
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 260, 286
HpyF3I	CTNAG	3 cut(s)	8, 140, 306
Hsp92I	GRCGYC	1 cut(s)	243
KflI	GGGWCCC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	196
LguI	GCTCTTC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	67
LpnPI	CCDG	5 cut(s)	49, 60, 76, 103, 213
Lsp1109I	GCAGC	2 cut(s)	156, 217
LweI	GCATC	1 cut(s)	292
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	4 cut(s)	152, 155, 179, 251
MflI	RGATCY	1 cut(s)	196
MnlI	CCTC	4 cut(s)	76, 114, 187, 222
MroXI	GAANNNNTTC	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	3 cut(s)	251, 260, 286
NdeII	GATC	1 cut(s)	196
NlaIV	GGNNCC	4 cut(s)	59, 87, 88, 198
PaeR7I	CTCGAG	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	171, 232
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	4 cut(s)	59, 87, 88, 198
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	192
SatI	GCNGC	2 cut(s)	170, 231
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	7 cut(s)	50, 59, 160, 171, 187, 282, 291
SfaNI	GCATC	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SsiI	CCGC	2 cut(s)	233, 299
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	48
TaqI	TCGA	2 cut(s)	81, 192
TfiI	GAWTC	1 cut(s)	78
TseI	GCWGC	2 cut(s)	169, 230
VpaK11BI	GGWCC	1 cut(s)	86
XagI	CCTNNNNNAGG	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.