Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Forward (+)

14401787 .. 14404426

Gene Structure 2640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG165900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGGAAGTGTTATCCAACTGTGAGCGAGGAGTACCAGAAAGCGGTTGAGAAATGCAAGAGAAAGCTGAGAGGACTCATCCAAGAGAAGCACTGCGCTCCTATAATTCTCCGAGTGGCGTGGCACTCGGCTGGGACGTTCGATGTGGCAACGAAGACCGGAGGGCCGTTCGGGGCGATCAGGGACCCGGCGGTGCTGGCTCATGAAGCAAACAAGGGACTCGAGATTGCAGTCAGGATTTTGGAGCCGATCAAGGAGCAGTTTCCGATTCTCTCATATGCAGACTTCTATCAGGACAAAGAAGAAGCACCACCGGAAGGTCGCTTGCCTAATGCCAACAAAGGTGTGGATCATTTGAGGGATGTGTTTGGCCATATGGGTCTCAGTGACAAGGACATTGTTGCATTATCTGGTGGACACACCTTGGGTAGGTGCCACAAGGAGCGCTCTGGATTTGAGGGACCCTGGACAACCAATCCCCTCATTTTCGACAACTCCTATTTCAAGGAACTTATTAGTGGAGAGAAGGAAGGTCTGATCCAGCTTCCATCAGATAAGGCTCTTCTTGAGGATCCAGTTTTTCGTACTTTTGTCGAGACCTATGCTGCGGATGAGGATGCTTTCTTTGCTGACTATGCTGAAGCTCATTTGAAGCTTTCAGAGCTTGGATTTGCAGATACCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

228

Amino Acids

25.35

Weight (kDa)

5.33

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	24 - 97	6.7e-07	Peroxidase
peroxidase	PF00141	104 - 204	4.8e-20	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	432
AciI	CCGC	3 cut(s)	44, 191, 608
AclWI	GGATC	4 cut(s)	357, 532, 566, 579
AcoI	YGGCCR	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	2 cut(s)	35, 586
AfeI	AGCGCT	1 cut(s)	446
AfiI	CCNNNNNNNGG	3 cut(s)	43, 317, 429
AgsI	TTSAA	2 cut(s)	505, 652
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	5 cut(s)	67, 544, 644, 655, 664
AluI	AGCT	5 cut(s)	67, 544, 644, 655, 664
Alw26I	GTCTC	2 cut(s)	386, 590
AlwI	GGATC	4 cut(s)	357, 532, 566, 579
Ama87I	CYCGRG	1 cut(s)	221
Aor51HI	AGCGCT	1 cut(s)	446
AoxI	GGCC	2 cut(s)	164, 370
ApeKI	GCWGC	1 cut(s)	605
AspLEI	GCGC	2 cut(s)	98, 447
AspS9I	GGNCC	3 cut(s)	164, 184, 461
AsuC2I	CCSGG	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	184, 461
BalI	TGGCCA	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	592
BccI	CCATC	1 cut(s)	556
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	386, 590
BfoI	RGCGCY	1 cut(s)	448
BisI	GCNGC	1 cut(s)	606
BlsI	GCNGC	1 cut(s)	607
Bme1390I	CCNGG	2 cut(s)	188, 466
Bme18I	GGWCC	2 cut(s)	184, 461
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	164, 184, 461
BmiI	GGNNCC	7 cut(s)	185, 186, 246, 434, 462, 463, 573
BmrFI	CCNGG	2 cut(s)	188, 466
BmsI	GCATC	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	2 cut(s)	386, 590
BsaJI	CCNNGG	2 cut(s)	423, 464
BsaWI	WCCGGW	2 cut(s)	158, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 317, 429
Bse1I	ACTGG	1 cut(s)	575
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	423, 464
BseGI	GGATG	4 cut(s)	78, 367, 616, 622
BseLI	CCNNNNNNNGG	3 cut(s)	43, 317, 429
BseMII	CTCAG	2 cut(s)	59, 397
BseNI	ACTGG	1 cut(s)	575
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	592
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	2 cut(s)	166, 372
BshNI	GGYRCC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	3 cut(s)	159, 188, 314
BslFI	GGGAC	4 cut(s)	148, 197, 231, 474
BslI	CCNNNNNNNGG	3 cut(s)	43, 317, 429
BsmAI	GTCTC	2 cut(s)	386, 590
BsmFI	GGGAC	4 cut(s)	148, 197, 231, 474
BsnI	GGCC	2 cut(s)	166, 372
Bso31I	GGTCTC	2 cut(s)	386, 590
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	177, 249, 349, 537, 571
BspACI	CCGC	3 cut(s)	44, 191, 608
BspANI	GGCC	2 cut(s)	166, 372
BspCNI	CTCAG	2 cut(s)	60, 396
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	7 cut(s)	185, 186, 246, 434, 462, 463, 573
BspPI	GGATC	4 cut(s)	357, 532, 566, 579
BspQI	GCTCTTC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	432
BspTNI	GGTCTC	2 cut(s)	386, 590
BsrI	ACTGG	1 cut(s)	575
BssECI	CCNNGG	2 cut(s)	423, 464
BssMI	GATC	5 cut(s)	177, 249, 349, 537, 571
BssT1I	CCWWGG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	567
BstC8I	GCNNGC	2 cut(s)	198, 326
BstDEI	CTNAG	2 cut(s)	68, 383
BstENI	CCTNNNNNAGG	1 cut(s)	427
BstF5I	GGATG	4 cut(s)	78, 367, 616, 622
BstH2I	RGCGCY	1 cut(s)	448
BstHHI	GCGC	2 cut(s)	98, 447
BstKTI	GATC	5 cut(s)	180, 252, 352, 540, 574
BstMAI	GTCTC	2 cut(s)	386, 590
BstMBI	GATC	5 cut(s)	177, 249, 349, 537, 571
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 206, 626, 635, 661
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	186, 464
BstV1I	GCAGC	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	166, 372
BtsCI	GGATG	4 cut(s)	78, 367, 616, 622
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	2 cut(s)	91, 391
Cac8I	GCNNGC	2 cut(s)	198, 326
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	98, 447
Cfr13I	GGNCC	3 cut(s)	164, 184, 461
Csp6I	GTAC	2 cut(s)	34, 585
CviAII	CATG	1 cut(s)	203
CviQI	GTAC	2 cut(s)	34, 585
DdeI	CTNAG	2 cut(s)	68, 383
DpnI	GATC	5 cut(s)	179, 251, 351, 539, 573
DpnII	GATC	5 cut(s)	177, 249, 349, 537, 571
EaeI	YGGCCR	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	567
EarI	CTCTTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	423
Eco31I	GGTCTC	2 cut(s)	386, 590
Eco47I	GGWCC	2 cut(s)	184, 461
Eco47III	AGCGCT	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	660
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	1 cut(s)	427
EcoO109I	RGGNCCY	2 cut(s)	184, 461
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	1 cut(s)	206
FaiI	YATR	8 cut(s)	104, 204, 277, 279, 375, 377, 603, 636
FaqI	GGGAC	4 cut(s)	148, 197, 231, 474
FatI	CATG	1 cut(s)	202
FauNDI	CATATG	2 cut(s)	277, 375
Fnu4HI	GCNGC	1 cut(s)	606
FokI	GGATG	4 cut(s)	65, 374, 623, 629
Fsp4HI	GCNGC	1 cut(s)	606
GlaI	GCGC	2 cut(s)	97, 446
GluI	GCNGC	1 cut(s)	606
GsaI	CCCAGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	448
HaeIII	GGCC	2 cut(s)	166, 372
HapII	CCGG	3 cut(s)	159, 188, 314
HhaI	GCGC	2 cut(s)	98, 447
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	2 cut(s)	96, 445
HinP1I	GCGC	2 cut(s)	96, 445
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	3 cut(s)	75, 219, 268
HpaII	CCGG	3 cut(s)	159, 188, 314
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	5 cut(s)	113, 267, 537, 553, 661
Hpy188III	TCNNGA	7 cut(s)	203, 223, 235, 293, 450, 566, 595
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	3 cut(s)	311, 520, 524
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	137
HpyCH4V	TGCA	5 cut(s)	57, 230, 281, 404, 674
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 206, 626, 635, 661
HpyF3I	CTNAG	2 cut(s)	68, 383
HpySE526I	ACGT	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	2 cut(s)	96, 445
KflI	GGGWCCC	2 cut(s)	184, 461
Kzo9I	GATC	5 cut(s)	177, 249, 349, 537, 571
LguI	GCTCTTC	1 cut(s)	567
LmnI	GCTCC	4 cut(s)	103, 244, 256, 442
Lsp1109I	GCAGC	1 cut(s)	592
LweI	GCATC	1 cut(s)	607
MaeII	ACGT	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	5 cut(s)	179, 251, 351, 539, 573
MboI	GATC	5 cut(s)	177, 249, 349, 537, 571
MboII	GAAGA	3 cut(s)	166, 314, 554
MflI	RGATCY	1 cut(s)	571
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	372
MlyI	GAGTC	2 cut(s)	69, 213
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	8 cut(s)	22, 65, 155, 351, 451, 491, 562, 607
Mox20I	TGGCCA	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	372
MspI	CCGG	3 cut(s)	159, 188, 314
MspR9I	CCNGG	2 cut(s)	188, 466
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	5 cut(s)	197, 206, 626, 635, 661
NciI	CCSGG	1 cut(s)	188
NdeI	CATATG	2 cut(s)	277, 375
NdeII	GATC	5 cut(s)	177, 249, 349, 537, 571
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	7 cut(s)	185, 186, 246, 434, 462, 463, 573
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	567
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	607
PleI	GAGTC	2 cut(s)	69, 213
PpsI	GAGTC	2 cut(s)	69, 213
PpuMI	RGGWCCY	2 cut(s)	184, 461
Psp5II	RGGWCCY	2 cut(s)	184, 461
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	7 cut(s)	185, 186, 246, 434, 462, 463, 573
PspPI	GGNCC	3 cut(s)	164, 184, 461
PspPPI	RGGWCCY	2 cut(s)	184, 461
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	2 cut(s)	35, 586
RsaNI	GTAC	2 cut(s)	34, 585
SapI	GCTCTTC	1 cut(s)	567
SatI	GCNGC	1 cut(s)	606
Sau3AI	GATC	5 cut(s)	177, 249, 349, 537, 571
Sau96I	GGNCC	3 cut(s)	164, 184, 461
SchI	GAGTC	2 cut(s)	69, 213
ScrFI	CCNGG	2 cut(s)	188, 466
SfaNI	GCATC	1 cut(s)	607
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	184, 461
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	221, 566
SmoI	CTYRAG	2 cut(s)	221, 566
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	3 cut(s)	44, 191, 608
StyD4I	CCNGG	2 cut(s)	186, 464
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	140
TaqI	TCGA	4 cut(s)	141, 222, 489, 594
TasI	AATT	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	268
TscAI	CASTG	2 cut(s)	98, 391
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	1 cut(s)	605
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	98, 391
VpaK11BI	GGWCC	2 cut(s)	184, 461
XagI	CCTNNNNNAGG	1 cut(s)	427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.