Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012721

Physical Location & Seq

Genomic Coordinates Reverse (-)

24057520 .. 24060068

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G242200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGAAATGCTACCCGACTGTGAGCGAGGAATATCAGAAGGCAGTGGATAAATGCAAGAGAAAGCTCCGAGGACACATCGCTGAAAAGCACTGCGCTCCTATAATTCTCCGATTAGCATGGCATTCGGCTGGTACCTTCGACGTGCAAAGCAAGACAGGAGGGCCGTTCGGGACCATAAGGCACCCGGAGGAGCTTGCTCATGAAGCAAACAATGGCCTGGATATTGCGGTCAGGCTCTTGGAGCCGATCAAGGAGAAGTTTCCGATTCTCTCATACGCAGATTTCTACCAGTTGGCCGGAGTTGTTGCTGTGGAAATTACAGGGGGGCCTGATGTTCCTTTCCACCCTGGTAGACCGGACAAACAAGAACCGCCACCAGAAGGTCGCTTGCCGGATGGCTCCAAAGGTTCGGATCATTTGAGGGATGTCTTTGGTCACATGGGTCTTAGTGACAAGGATATTGTTGTATTATCCGGTGGACACACATTGGGTAGGTGCCACAAAGAACGTTCTGGATTTGAGGGACCCTGGACAACCAACCCCCTCATTTTTGACAACTCCTATTTCAAGGAACTTTTTAGTGGAGAGAAAGAAGGCCTTATCCAGCTGCCATCAGACAAGGCTCTTCTGGAGGATCCAGTCTTTCGTCCTCTTGTTGAGACCTATGCCGCGGACGAGGACGCTTTCTTTGCGGATTATGCCGAAGCGCATTTGAAACTCTCAGAGCTTGGATTCGCTGATGCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009636 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0033554 GO:0034599 GO:0042221 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098754 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

251

Amino Acids

27.62

Weight (kDa)

5.39

Isoelectric Point (pI)

41.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09640 AT3G09640
fragaria_vesca	FvH4_6g15200 FvH4_6g15200
malus_domestica	MD04G1104900.v1.1 MD12G1125600.v1.1
prunus_persica	Prupe.6G242200_v2.0.a1
pyrus_communis	pycom04g10030 pycom12g12390
rosa_chinensis	RchiOBHm_Chr3g0468551
rosa_laevigata	RLG00000024423
rosa_multiflora	Rmu_sc0009516.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412700
rosa_rugosa	Rorug03G0095800 Rorug03G0095900
rosa_samantha	Rh3BG166500 Rh3DG165900
rosa_wichuraiana	Rw3G013620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	3 cut(s)	134, 183, 498
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	674
AciI	CCGC	5 cut(s)	230, 374, 672, 674, 695
AclI	AACGTT	1 cut(s)	511
AclWI	GGATC	3 cut(s)	423, 632, 645
AcoI	YGGCCR	1 cut(s)	297
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	571, 718
AjiI	CACGTC	1 cut(s)	145
AjnI	CCWGG	3 cut(s)	219, 349, 530
AluBI	AGCT	4 cut(s)	67, 196, 610, 730
AluI	AGCT	4 cut(s)	67, 196, 610, 730
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	3 cut(s)	423, 632, 645
AoxI	GGCC	5 cut(s)	164, 217, 297, 329, 598
ApeKI	GCWGC	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	98, 712
AspS9I	GGNCC	4 cut(s)	164, 174, 329, 527
AsuC2I	CCSGG	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	174, 527
BamHI	GGATCC	1 cut(s)	637
BanI	GGYRCC	3 cut(s)	134, 183, 498
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	2 cut(s)	392, 622
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciT130I	CCWGG	3 cut(s)	221, 351, 532
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	656
BisI	GCNGC	2 cut(s)	611, 672
BlsI	GCNGC	2 cut(s)	612, 673
Bme1390I	CCNGG	4 cut(s)	188, 221, 351, 532
Bme18I	GGWCC	2 cut(s)	174, 527
BmgBI	CACGTC	1 cut(s)	145
BmgT120I	GGNCC	4 cut(s)	164, 174, 329, 527
BmrFI	CCNGG	4 cut(s)	188, 221, 351, 532
BmsI	GCATC	1 cut(s)	733
BpmI	CTGGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	656
BsaJI	CCNNGG	4 cut(s)	70, 349, 530, 672
BsaWI	WCCGGW	2 cut(s)	358, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	292, 641
BseBI	CCWGG	3 cut(s)	221, 351, 532
BseDI	CCNNGG	4 cut(s)	70, 349, 530, 672
BseGI	GGATG	2 cut(s)	403, 433
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	2 cut(s)	292, 641
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	597
Bsh1236I	CGCG	1 cut(s)	674
BshFI	GGCC	5 cut(s)	166, 219, 299, 331, 600
BshNI	GGYRCC	3 cut(s)	134, 183, 498
BsiSI	CCGG	5 cut(s)	188, 300, 359, 395, 477
BslFI	GGGAC	2 cut(s)	187, 540
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	656
BsmFI	GGGAC	2 cut(s)	187, 540
BsmI	GAATGC	1 cut(s)	124
BsnI	GGCC	5 cut(s)	166, 219, 299, 331, 600
Bso31I	GGTCTC	1 cut(s)	656
Bsp143I	GATC	3 cut(s)	249, 415, 637
BspACI	CCGC	5 cut(s)	230, 374, 672, 674, 695
BspANI	GGCC	5 cut(s)	166, 219, 299, 331, 600
BspCNI	CTCAG	1 cut(s)	737
BspFNI	CGCG	1 cut(s)	674
BspHI	TCATGA	1 cut(s)	202
BspPI	GGATC	3 cut(s)	423, 632, 645
BspQI	GCTCTTC	1 cut(s)	633
BspT107I	GGYRCC	3 cut(s)	134, 183, 498
BspTNI	GGTCTC	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	292, 641
BssECI	CCNNGG	4 cut(s)	70, 349, 530, 672
BssMI	GATC	3 cut(s)	249, 415, 637
Bst2UI	CCWGG	3 cut(s)	221, 351, 532
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	2 cut(s)	198, 392
BstDEI	CTNAG	2 cut(s)	449, 724
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	403, 433
BstFNI	CGCG	1 cut(s)	674
BstHHI	GCGC	2 cut(s)	98, 712
BstKTI	GATC	3 cut(s)	252, 418, 640
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	3 cut(s)	249, 415, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	206, 244, 692, 701
BstNI	CCWGG	3 cut(s)	221, 351, 532
BstSCI	CCNGG	4 cut(s)	186, 219, 349, 530
BstUI	CGCG	1 cut(s)	674
BstV1I	GCAGC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	5 cut(s)	166, 219, 299, 331, 600
BtgI	CCRYGG	1 cut(s)	672
BtgZI	GCGATG	1 cut(s)	64
BtrI	CACGTC	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	403, 433
BtsI	GCAGTG	2 cut(s)	51, 91
BtsIMutI	CAGTG	2 cut(s)	51, 91
Cac8I	GCNNGC	2 cut(s)	198, 392
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	2 cut(s)	98, 712
Cfr13I	GGNCC	4 cut(s)	164, 174, 329, 527
Cfr42I	CCGCGG	1 cut(s)	675
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	3 cut(s)	120, 203, 442
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	449, 724
DpnI	GATC	3 cut(s)	251, 417, 639
DpnII	GATC	3 cut(s)	249, 415, 637
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco147I	AGGCCT	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	656
Eco47I	GGWCC	2 cut(s)	174, 527
EcoO109I	RGGNCCY	2 cut(s)	329, 527
EcoRII	CCWGG	3 cut(s)	219, 349, 530
FaeI	CATG	3 cut(s)	123, 206, 445
FaiI	YATR	8 cut(s)	104, 121, 179, 204, 277, 443, 669, 702
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	2 cut(s)	187, 540
FatI	CATG	3 cut(s)	119, 202, 441
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	611, 672
FokI	GGATG	2 cut(s)	410, 440
Fsp4HI	GCNGC	2 cut(s)	611, 672
GlaI	GCGC	2 cut(s)	97, 711
GluI	GCNGC	2 cut(s)	611, 672
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	5 cut(s)	166, 219, 299, 331, 600
HapII	CCGG	5 cut(s)	188, 300, 359, 395, 477
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	2 cut(s)	98, 712
Hin1II	CATG	3 cut(s)	123, 206, 445
Hin6I	GCGC	2 cut(s)	96, 710
HinP1I	GCGC	2 cut(s)	96, 710
HinfI	GANTC	2 cut(s)	268, 735
HpaII	CCGG	5 cut(s)	188, 300, 359, 395, 477
Hpy166II	GTNNAC	2 cut(s)	356, 482
Hpy188I	TCNGA	7 cut(s)	39, 71, 113, 267, 415, 619, 727
Hpy188III	TCNNGA	4 cut(s)	172, 203, 516, 632
Hpy8I	GTNNAC	2 cut(s)	356, 482
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	4 cut(s)	34, 148, 377, 590
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	2 cut(s)	144, 511
HpyCH4V	TGCA	2 cut(s)	57, 148
HpyF10VI	GCNNNNNNNGC	4 cut(s)	206, 244, 692, 701
HpyF3I	CTNAG	2 cut(s)	449, 724
HpySE526I	ACGT	2 cut(s)	144, 511
Hsp92II	CATG	3 cut(s)	123, 206, 445
HspAI	GCGC	2 cut(s)	96, 710
KflI	GGGWCCC	1 cut(s)	527
KpnI	GGTACC	1 cut(s)	138
KspI	CCGCGG	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	249, 415, 637
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	5 cut(s)	72, 103, 193, 244, 407
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	1 cut(s)	733
MaeII	ACGT	2 cut(s)	144, 511
MaeIII	GTNAC	2 cut(s)	437, 452
MalI	GATC	3 cut(s)	251, 417, 639
MboI	GATC	3 cut(s)	249, 415, 637
MboII	GAAGA	1 cut(s)	620
MflI	RGATCY	1 cut(s)	637
MluCI	AATT	2 cut(s)	105, 318
MspA1I	CMGCKG	2 cut(s)	610, 674
MspI	CCGG	5 cut(s)	188, 300, 359, 395, 477
MspR9I	CCNGG	4 cut(s)	188, 221, 351, 532
Mva1269I	GAATGC	1 cut(s)	124
MvaI	CCWGG	3 cut(s)	221, 351, 532
MvnI	CGCG	1 cut(s)	674
MwoI	GCNNNNNNNGC	4 cut(s)	206, 244, 692, 701
NciI	CCSGG	1 cut(s)	188
NdeII	GATC	3 cut(s)	249, 415, 637
NlaIII	CATG	3 cut(s)	123, 206, 445
NmuCI	GTSAC	2 cut(s)	437, 452
PagI	TCATGA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	633
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	268, 735
PkrI	GCNGC	2 cut(s)	612, 673
PpuMI	RGGWCCY	1 cut(s)	527
Psp1406I	AACGTT	1 cut(s)	511
Psp5II	RGGWCCY	1 cut(s)	527
Psp6I	CCWGG	3 cut(s)	219, 349, 530
PspGI	CCWGG	3 cut(s)	219, 349, 530
PspPI	GGNCC	4 cut(s)	164, 174, 329, 527
PspPPI	RGGWCCY	1 cut(s)	527
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	610
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacII	CCGCGG	1 cut(s)	675
SapI	GCTCTTC	1 cut(s)	633
SatI	GCNGC	2 cut(s)	611, 672
Sau3AI	GATC	3 cut(s)	249, 415, 637
Sau96I	GGNCC	4 cut(s)	164, 174, 329, 527
ScrFI	CCNGG	4 cut(s)	188, 221, 351, 532
SfaNI	GCATC	1 cut(s)	733
Sfr303I	CCGCGG	1 cut(s)	675
SgrBI	CCGCGG	1 cut(s)	675
SinI	GGWCC	2 cut(s)	174, 527
Sse9I	AATT	2 cut(s)	105, 318
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	5 cut(s)	230, 374, 672, 674, 695
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	186, 219, 349, 530
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	2 cut(s)	147, 514
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	105, 318
TauI	GCSGC	1 cut(s)	674
TfiI	GAWTC	2 cut(s)	268, 735
TscAI	CASTG	2 cut(s)	51, 98
TseFI	GTSAC	2 cut(s)	437, 452
TseI	GCWGC	1 cut(s)	610
Tsp45I	GTSAC	2 cut(s)	437, 452
TspDTI	ATGAA	1 cut(s)	219
TspRI	CASTG	2 cut(s)	51, 98
VpaK11BI	GGWCC	2 cut(s)	174, 527
XmiI	GTMKAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.